In the Exploring DeRisi_i popup window, select the button "Find Genes Matching Criteria..."
To find genes whose expression increases by a factor of at least 4 at any time during the diauxic shift experiment, check the first box, select Max, value, > 4. This search finds 181 genes (183 are reported in the paper). The expression profiles of these 181 genes (before log transformation) are shown in the following plot:
To find genes whose expression diminishes by a factor of at least 4 at any time during the diauxic shift experiment, check the first box, select Min, value, < .25. This search finds 190 genes (as compared to 203 in the paper). The expression profiles of these 190 genes (before log transformation) are shown in the following plot:
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