GcatWiki - User contributions [en]

File:4Areas MedicineOnly JP.pptx

2013-06-20T17:12:39Z

Poet: For workshop 2013

For workshop 2013

HPP Status

2011-07-02T14:20:33Z

Poet:

[[Biology Status]] 
[[Math Status]]

HPP Status

2011-07-02T14:19:56Z

Poet:

[[Biology Status]] 
[[Math Status]] 
[[11NodeHPP_070111|11NodeHPP_070111.pptx]]

File:11NodeHPP 070111.pptx

2011-07-02T14:15:51Z

Poet: Ppt showing potential 11-node graph with unique HPP and no circuits. Also illustrates the power of a different presentations of the same problem making things harder or easier for the human doing the problem (but presumably immaterial to either a silicon

Ppt showing potential 11-node graph with unique HPP and no circuits. Also illustrates the power of a different presentations of the same problem making things harder or easier for the human doing the problem (but presumably immaterial to either a silicon or bacterial computer).

Missouri Western/Davidson iGEM2009

2009-04-17T21:06:21Z

Poet:

This space will be used starting April, 2009 for brainstorming and a shared whiteboard space.

[http://gcat.davidson.edu/GcatWiki/index.php/Davidson_Missouri_W/Davidson_Protocols Davidson Lab Protocols] 
[http://gcat.davidson.edu/GcatWiki/index.php/Davidson_Missouri_W/MWSU_protocols MWSU Lab Protocols] 
[http://gcat.davidson.edu/sybr-u/bmc.html BioMath Connections Page] 
[http://gcat.davidson.edu/GCATalog-r2.1/GCATalog.htm GCAT-along Freezer Stocks] 

We need to learn more about these topics:
<center>'''Biology-based'''</center>
#[[What is msDNA?]]
#[[How is msDNA normally produced?]]
#[[How is msDNA stored in E. coli?]]
#[[How many copies are carried per cell?]]
#[[What is the sequence of bacterial reverse transcriptase and can we clone that gene?]]
#[[Can we redesign the normal msDNA pathway to produce new segments of DNA of our choosing?]]
#[[Can we use suppressor tRNAs to encode logical operators (suppressor suppressor logic, SSL)?]]
#[[Can we solve a 3-SAT problem with supressor logic?]]
#[[What role can physical modeling of protein structure play in our project?]]

<center>'''Math-based'''</center>
#What interesting challenges or problems does origami offer?
#Can we produce a series of increasingly difficult goals that might be possible to produce in the lab?
#What has been done before and how can we improve upon that?
#We can perform some pilot experiments using synthesized DNA and later switch to msDNA (maybe).
#Can we address the Boolean Satisfiability (SAT) problem with a bacterial computer?
#How has 3SAT been addressed with a DNA computer? Can we use those methods?
#[[Can we get bacteria to solve a problem large enough to challenge a person?]]
#Can we get bacteria to solve a problem large enough to challenge a computer (probably not, but it is fun to think about)?
#What are some linear algebra applications for DNA origami?
#How can we use origami to solve 3-SAT problems?

<center>'''Behavior-based'''</center>
#[[What constructs are we testing?]]
#[[What school districts do we have access to?]]
#[[Where is the Synthetic Biology page we want high school teachers to use after the survey?]]
#[[Do you need any more input from the veterans before the survey is ready?]]

<center>'''Questions from BMC 4/17/09'''</center>

(In no particular order)

#[[Could we have/use multiple synthetic organelles in a cell?]]
#[[What ideas from previous iGEM teams are useful to us?]]
#[[What other math problems (e.g. NP- complete) are accessible to us? Siya Sun]]
#[[What is the relationship between 3-SAT and map coloring? Ashley Schnoor]]
#[[Could we do something with clocks/counting?]]
#[[What role can physical modeling of proteins play in our project? Eric Sawyer]]
#[[What activators are there that turn on a promoter without any help?]]
#[[What other cool reporters are there? (Discrete On/Off or Continuous) Bryce Szczepanik]]
#[[Can we use promoter strength/opposite directions to subtract? Clif Davis]]
#[[Can we use protein interactions to compute? (Post-translation, proteases, quaternary structure) Will Vernon]]

Missouri Western/Davidson iGEM2009

2009-04-17T21:02:20Z

Poet:

This space will be used starting April, 2009 for brainstorming and a shared whiteboard space.

[http://gcat.davidson.edu/GcatWiki/index.php/Davidson_Missouri_W/Davidson_Protocols Davidson Lab Protocols] 
[http://gcat.davidson.edu/GcatWiki/index.php/Davidson_Missouri_W/MWSU_protocols MWSU Lab Protocols] 
[http://gcat.davidson.edu/sybr-u/bmc.html BioMath Connections Page] 
[http://gcat.davidson.edu/GCATalog-r2.1/GCATalog.htm GCAT-along Freezer Stocks] 

We need to learn more about these topics:
<center>'''Biology-based'''</center>
#[[What is msDNA?]]
#[[How is msDNA normally produced?]]
#[[How is msDNA stored in E. coli?]]
#[[How many copies are carried per cell?]]
#[[What is the sequence of bacterial reverse transcriptase and can we clone that gene?]]
#[[Can we redesign the normal msDNA pathway to produce new segments of DNA of our choosing?]]
#[[Can we use suppressor tRNAs to encode logical operators (suppressor suppressor logic, SSL)?]]
#[[Can we solve a 3-SAT problem with supressor logic?]]
#[[What role can physical modeling of protein structure play in our project?]]

<center>'''Math-based'''</center>
#What interesting challenges or problems does origami offer?
#Can we produce a series of increasingly difficult goals that might be possible to produce in the lab?
#What has been done before and how can we improve upon that?
#We can perform some pilot experiments using synthesized DNA and later switch to msDNA (maybe).
#Can we address the Boolean Satisfiability (SAT) problem with a bacterial computer?
#How has 3SAT been addressed with a DNA computer? Can we use those methods?
#[[Can we get bacteria to solve a problem large enough to challenge a person?]]
#Can we get bacteria to solve a problem large enough to challenge a computer (probably not, but it is fun to think about)?
#What are some linear algebra applications for DNA origami?
#How can we use origami to solve 3-SAT problems?

<center>'''Behavior-based'''</center>
#[[What constructs are we testing?]]
#[[What school districts do we have access to?]]
#[[Where is the Synthetic Biology page we want high school teachers to use after the survey?]]
#[[Do you need any more input from the veterans before the survey is ready?]]

<center>'''Questions from BMC 4/17/09'''</center>

(In no particular order)

Could we have/use multiple synthetic organelles in a cell?
What ideas from previous iGEM teams are useful to us?
What other math problems (e.g. NP- complete) are accessible to us? Siya Sun
What is the relationship between 3-SAT and map coloring? Ashley Schnoor
Could we do something with clocks/counting?
What role can physical modeling of proteins play in our project? Eric Sawyer
What activators are there that turn on a promoter without any help?
What other cool reporters are there? (Discrete On/Off or Continuous) Bryce Szczepanik
Can we use promoter strength/opposite directions to subtract? Clif Davis
Can we use protein interactions to compute? (Post-translation, proteases, quaternary structure) Will Vernon

Missouri Western/Davidson iGEM2009

2009-04-17T21:01:09Z

Poet:

This space will be used starting April, 2009 for brainstorming and a shared whiteboard space.

[http://gcat.davidson.edu/GcatWiki/index.php/Davidson_Missouri_W/Davidson_Protocols Davidson Lab Protocols] 
[http://gcat.davidson.edu/GcatWiki/index.php/Davidson_Missouri_W/MWSU_protocols MWSU Lab Protocols] 
[http://gcat.davidson.edu/sybr-u/bmc.html BioMath Connections Page] 
[http://gcat.davidson.edu/GCATalog-r2.1/GCATalog.htm GCAT-along Freezer Stocks] 

We need to learn more about these topics:
<center>'''Biology-based'''</center>
#[[What is msDNA?]]
#[[How is msDNA normally produced?]]
#[[How is msDNA stored in E. coli?]]
#[[How many copies are carried per cell?]]
#[[What is the sequence of bacterial reverse transcriptase and can we clone that gene?]]
#[[Can we redesign the normal msDNA pathway to produce new segments of DNA of our choosing?]]
#[[Can we use suppressor tRNAs to encode logical operators (suppressor suppressor logic, SSL)?]]
#[[Can we solve a 3-SAT problem with supressor logic?]]
#[[What role can physical modeling of protein structure play in our project?]]

<center>'''Math-based'''</center>
#What interesting challenges or problems does origami offer?
#Can we produce a series of increasingly difficult goals that might be possible to produce in the lab?
#What has been done before and how can we improve upon that?
#We can perform some pilot experiments using synthesized DNA and later switch to msDNA (maybe).
#Can we address the Boolean Satisfiability (SAT) problem with a bacterial computer?
#How has 3SAT been addressed with a DNA computer? Can we use those methods?
#[[Can we get bacteria to solve a problem large enough to challenge a person?]]
#Can we get bacteria to solve a problem large enough to challenge a computer (probably not, but it is fun to think about)?
#What are some linear algebra applications for DNA origami?
#How can we use origami to solve 3-SAT problems?

<center>'''Behavior-based'''</center>
#[[What constructs are we testing?]]
#[[What school districts do we have access to?]]
#[[Where is the Synthetic Biology page we want high school teachers to use after the survey?]]
#[[Do you need any more input from the veterans before the survey is ready?]]

<center>'''Questions from Missouri Western BMC 4/17/09'''</center>

(In no particular order)

Could we have/use multiple synthetic organelles in a cell?
What ideas from previous iGEM teams are useful to us?
What other math problems (e.g. NP- complete) are accessible to us? Siya Sun
What is the relationship between 3-SAT and map coloring? Ashley Schnoor
Could we do something with clocks/counting?
What role can physical modeling of proteins play in our project? Eric Sawyer
What activators are there that turn on a promoter without any help?
What other cool reporters are there? (Discrete On/Off or Continuous) Bryce Szczepanik
Can we use promoter strength/opposite directions to subtract? Clif Davis
Can we use protein interactions to compute? (Post-translation, proteases, quaternary structure) Will Vernon