Hypothetical Protein 644031642 (Karen Hasty) - Revision history

Kahasty at 01:58, 9 September 2009

2009-09-09T01:58:01Z

2009-09-09T01:56:43Z

2009-09-09T01:51:19Z

2009-09-09T01:51:03Z

2009-09-09T01:50:43Z

2009-09-09T01:49:50Z

2009-09-09T01:40:47Z

New page

[http://img.jgi.doe.gov/cgi-bin/geba/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=644031642 Hypothetical Protein 644031642]

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 There are several interesting results using Blastx. <br>
-[[Image:Blastx2.JPG]]
+[[Image:Blastx2.JPG]] <br>
 There are several other species with hypothetical proteins that match with our sequence of amino acids. The e-values for these matches are very low, suggesting that this hypothetical protein may be a real protein instead of a glitch in annotation. Additionally, there are two proteins with acceptable e values (<.01) that code for regulatory proteins. One of these proteins is a DNA repair protein and the other is a transcriptional regulator. Perhaps one of these proteins offers a clue as to the function of this hypothetical protein.

← Older revision		Revision as of 01:56, 9 September 2009
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	There are several interesting results using Blastx. <br>		There are several interesting results using Blastx. <br>
	[[Image:Blastx2.JPG]]		[[Image:Blastx2.JPG]]
		+	There are several other species with hypothetical proteins that match with our sequence of amino acids. The e-values for these matches are very low, suggesting that this hypothetical protein may be a real protein instead of a glitch in annotation. Additionally, there are two proteins with acceptable e values (<.01) that code for regulatory proteins. One of these proteins is a DNA repair protein and the other is a transcriptional regulator. Perhaps one of these proteins offers a clue as to the function of this hypothetical protein.
		+
		+	'''GC Content'''
		+
		+	The GC content of this gene is 66%, which is identical to the overall GC content of our organisms genome. This fact implies that this gene is not an alien gene.

@@ Line 11: / Line 11: @@
 '''Blastx'''
-There are several interesting results using Blastx.
+There are several interesting results using Blastx. <br>
 [[Image:Blastx2.JPG]]

← Older revision		Revision as of 01:51, 9 September 2009
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	There are several interesting results using Blastx.		There are several interesting results using Blastx.
−	[[Image:Blastx2.~~jpg~~]]	+	[[Image:Blastx2.JPG]]

← Older revision		Revision as of 01:50, 9 September 2009
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	'''Blastx'''		'''Blastx'''
		+
	There are several interesting results using Blastx.		There are several interesting results using Blastx.
		+	[[Image:Blastx2.jpg]]

← Older revision		Revision as of 01:49, 9 September 2009
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	[http://img.jgi.doe.gov/cgi-bin/geba/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=644031642 Hypothetical Protein 644031642]		[http://img.jgi.doe.gov/cgi-bin/geba/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=644031642 Hypothetical Protein 644031642]
		+
		+	'''Shine-delgarno sequence'''
		+
		+	Fifteen nucleotides before the start codon for this protein is the sequence "CGGCGGA." This sequence could very well be the shine-delgarno sequence since it fits very well into our species established _GG_GG_ pattern.
		+
		+	'''Start and stop codons'''
		+
		+	The start codon is the normal ATG and the stop codon TAG is located 408 nucleotides downstream.
		+
		+	'''Blastx'''
		+	There are several interesting results using Blastx.