Papers to Consider - Revision history

Olhoshing at 16:46, 20 May 2010

2010-05-20T16:46:47Z

Olhoshing at 16:11, 20 May 2010

2010-05-20T16:11:54Z

Olhoshing at 16:11, 20 May 2010

2010-05-20T16:11:28Z

Olhoshing at 15:56, 20 May 2010

2010-05-20T15:56:10Z

Olhoshing at 15:45, 20 May 2010

2010-05-20T15:45:46Z

New page

* Ghosh B, Karmakar R, Bose I. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Ghosh_2005.pdf (2005).] Noise characteristics of feed forward loops. Phys Biol 2: 36 - 45.
* Young E, Alper H. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Young_2010.pdf (2010).] Synthetic biology: tools to design, build and optimize cellular processes. J Biomed Biotechnol. 2010:130781.

@@ Line 1: / Line 1: @@
 * Atkinson MR, Savageau MA, Myers JT, Ninfa AJ. [http://www.ncbi.nlm.nih.gov/pubmed/12787501 (2003).] Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli. Cell 113: 597 - 607.
 * Ghosh B, Karmakar R, Bose I. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Ghosh_2005.pdf (2005).] Noise characteristics of feed forward loops. Phys Biol 2: 36 - 45.
 * McMillen D, Kopell N, Hasty J, Collins JJ. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/McMillen_2002.pdf (2002).] Synchronizing genetic relaxation oscillators by intercell signaling. PNAS 99:679-84.
 * Young E, Alper H. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Young_2010.pdf (2010).] Synthetic biology: tools to design, build and optimize cellular processes. J Biomed Biotechnol. 2010:130781.
@@ Line 6: / Line 7: @@
-'''The following papers are listed at the end of my final paper as consideration more specifically for the noise tuner project:'''
+'''The following papers are listed at the end of my final noise tuner paper:'''

@@ Line 14: / Line 14: @@
 * Levens D, Gupta A. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Levens_2010.pdf (2010).] Molecular biology. Reliable noise. Science 327: 1088–89.
 * Shinar G, Feinberg M. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Shinar_2010.pdf (2010).] Structural sources of robustness in biochemical reaction networks. Science 327: 1389–91.
-* Stricker J, Cookson S, Bennett MR, Mather WH, Tsimring LS, Hasty J. [[http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Stricker_2008.pdf (2008).] A fast, robust and tunable synthetic gene oscillator. Nature 456: 516–19.
+* Stricker J, Cookson S, Bennett MR, Mather WH, Tsimring LS, Hasty J. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Stricker_2008.pdf (2008).] A fast, robust and tunable synthetic gene oscillator. Nature 456: 516–19.
-* To TL, Maheshri N. [[http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/To_2010.pdf (2010).] Noise can induce bimodality in positive transcriptional feedback loops without bistability. Science 327: 1142–45.
+* To TL, Maheshri N. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/To_2010.pdf (2010).] Noise can induce bimodality in positive transcriptional feedback loops without bistability. Science 327: 1142–45.

@@ Line 3: / Line 3: @@
 * McMillen D, Kopell N, Hasty J, Collins JJ. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/McMillen_2002.pdf (2002).] Synchronizing genetic relaxation oscillators by intercell signaling. PNAS 99:679-84.
 * Young E, Alper H. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Young_2010.pdf (2010).] Synthetic biology: tools to design, build and optimize cellular processes. J Biomed Biotechnol. 2010:130781.
-* Zhou T, Chen L, Aihara K. [[http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Zhou_2005.pdf (2005).] Molecular communication through stochastic synchronization induced by extracellular fluctuations. Phys Rev Lett 95:178103.
+* Zhou T, Chen L, Aihara K. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Zhou_2005.pdf (2005).] Molecular communication through stochastic synchronization induced by extracellular fluctuations. Phys Rev Lett 95:178103.

← Older revision		Revision as of 15:56, 20 May 2010
Line 1:		Line 1:
		+	* Atkinson MR, Savageau MA, Myers JT, Ninfa AJ. [http://www.ncbi.nlm.nih.gov/pubmed/12787501 (2003).] Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli. Cell 113: 597 - 607.
	* Ghosh B, Karmakar R, Bose I. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Ghosh_2005.pdf (2005).] Noise characteristics of feed forward loops. Phys Biol 2: 36 - 45.		* Ghosh B, Karmakar R, Bose I. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Ghosh_2005.pdf (2005).] Noise characteristics of feed forward loops. Phys Biol 2: 36 - 45.
		+	* McMillen D, Kopell N, Hasty J, Collins JJ. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/McMillen_2002.pdf (2002).] Synchronizing genetic relaxation oscillators by intercell signaling. PNAS 99:679-84.
	* Young E, Alper H. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Young_2010.pdf (2010).] Synthetic biology: tools to design, build and optimize cellular processes. J Biomed Biotechnol. 2010:130781.		* Young E, Alper H. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Young_2010.pdf (2010).] Synthetic biology: tools to design, build and optimize cellular processes. J Biomed Biotechnol. 2010:130781.
		+	* Zhou T, Chen L, Aihara K. [[http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Zhou_2005.pdf (2005).] Molecular communication through stochastic synchronization induced by extracellular fluctuations. Phys Rev Lett 95:178103.