Priority List of Topics - Revision history

Macampbell: /* Additional Possible Topics */

2011-03-08T15:40:41Z

‎Additional Possible Topics

2011-03-08T15:40:15Z

‎Additional Possible Topics

2011-02-03T19:23:13Z

‎[http://gcat.davidson.edu/spring2010/project2/ perl scripts for genome analysis]

2011-02-03T19:20:57Z

‎[http://gcat.davidson.edu/spring2010/project2/ perl scripts for genome analysis]

2011-02-01T12:27:49Z

‎Jared

2011-02-01T11:02:18Z

‎Jared

2011-02-01T11:01:51Z

‎Jared

2011-02-01T04:23:59Z

‎Will

2011-01-31T22:13:53Z

‎[http://gcat.davidson.edu/spring2010/project2/ perl scripts for genome analysis]

2011-01-31T22:13:30Z

‎[http://gcat.davidson.edu/spring2010/project2/ perl scripts for genome analysis]

@@ Line 3: / Line 3: @@
 [http://dl.dropbox.com/u/4936834/PWM_scan.zip PWM Scan] - a perl script that scans a genome or long DNA sequence for motifs that fit into a specific position weight matrix's parameters. Includes a quicker scan and a longer scan that uses every possible window.
-[http://dl.dropbox.com/u/4936834/blastparse.py Blast Parse] - python script that will parse local blast results. Input should be the tab delimiter format as follows: QueryName Subject QueryEnd QueryStart SubjectEnd. Output can sort by any one of these elements. The default setting is to sort by Subject (in our case contigs or scaffolds).
+[http://dl.dropbox.com/u/4936834/blastparse.py Blast Parse] - python script that will parse local blast results. Input should be the tab delimiter format as follows: QueryName Subject QueryEnd QueryStart SubjectEnd. Output can sort by any one of these elements. The default setting is to sort by Subject (in our case contigs or scaffolds). Note: to run, edit input file name to match your input file. Then type "python /pathto/blastparse.py" from terminal
 ==Lauren==

← Older revision		Revision as of 19:20, 3 February 2011
Line 2:		Line 2:

	[http://dl.dropbox.com/u/4936834/PWM_scan.zip PWM Scan] - a perl script that scans a genome or long DNA sequence for motifs that fit into a specific position weight matrix's parameters. Includes a quicker scan and a longer scan that uses every possible window.		[http://dl.dropbox.com/u/4936834/PWM_scan.zip PWM Scan] - a perl script that scans a genome or long DNA sequence for motifs that fit into a specific position weight matrix's parameters. Includes a quicker scan and a longer scan that uses every possible window.
		+
		+	[http://dl.dropbox.com/u/4936834/blastparse.py Blast Parse] - python script that will parse local blast results. Input should be the tab delimiter format as follows: QueryName Subject QueryEnd QueryStart SubjectEnd. Output can sort by any one of these elements. The default setting is to sort by Subject (in our case contigs or scaffolds).

	==Lauren==		==Lauren==

@@ Line 36: / Line 36: @@
 ==Jared==
-'''[[Epigenetic Enzymes]]'''
+'''[[Methytransferases and RNAi Pathways]]'''
 ==Additional Possible Topics==

@@ Line 1: / Line 1: @@
 ==[http://gcat.davidson.edu/spring2010/project2/ perl scripts for genome analysis]==
-[[http://dl.dropbox.com/u/4936834/PWM_scan.zip PWM Scan]] - a perl script that scans a genome or long DNA sequence for motifs that fit into a specific position weight matrix's parameters. Includes a quicker scan and a longer scan that uses every possible window.
+[http://dl.dropbox.com/u/4936834/PWM_scan.zip PWM Scan] - a perl script that scans a genome or long DNA sequence for motifs that fit into a specific position weight matrix's parameters. Includes a quicker scan and a longer scan that uses every possible window.
 ==Lauren==

← Older revision		Revision as of 22:13, 31 January 2011
Line 1:		Line 1:
	==[http://gcat.davidson.edu/spring2010/project2/ perl scripts for genome analysis]==		==[http://gcat.davidson.edu/spring2010/project2/ perl scripts for genome analysis]==
		+
		+	[[http://dl.dropbox.com/u/4936834/PWM_scan.zip PWM Scan]] - a perl script that scans a genome or long DNA sequence for motifs that fit into a specific position weight matrix's parameters. Includes a quicker scan and a longer scan that uses every possible window.

	==Lauren==		==Lauren==