RRNA operon 2009 - Revision history

Sapyfrom at 16:35, 3 September 2009

2009-09-03T16:35:42Z

Sapyfrom: /* 23S rRNA 644029745; 23S; 349bp: Top three genes with significant similarity: */

2009-09-03T16:34:48Z

‎23S rRNA 644029745; 23S; 349bp: Top three genes with significant similarity:

Sapyfrom: /* "23S rRNA" */

2009-09-03T16:33:51Z

‎"23S rRNA"

Sapyfrom: /* 23S rRNA 644031592; 1767129..1770035 (-); 2907bp: Top three genes with significant similarity: */

2009-09-03T16:33:36Z

‎23S rRNA 644031592; 1767129..1770035 (-); 2907bp: Top three genes with significant similarity:

Sapyfrom: /* 23S rRNA; 644032999; (3109294..3111201(+)); 1908bp Top three genes with significant similarity: */

2009-09-03T16:32:23Z

‎23S rRNA; 644032999; (3109294..3111201(+)); 1908bp Top three genes with significant similarity:

Sapyfrom: /* 23S rRNA */

2009-09-03T16:31:24Z

‎23S rRNA

Sapyfrom: /* 23S rRNA; 644033000; (1..1863(+)); 23S; 1863 bp Top three genes with significant similarity */

2009-09-03T16:31:07Z

‎23S rRNA; 644033000; (1..1863(+)); 23S; 1863 bp Top three genes with significant similarity

Mereilly at 16:40, 1 September 2009

2009-09-01T16:40:06Z

Sapyfrom: /* 23S rRNA (1..1863(+)); 23S; 1863 bp Top thee genes with significant similarity */

2009-09-01T16:34:10Z

‎23S rRNA (1..1863(+)); 23S; 1863 bp Top thee genes with significant similarity

Sapyfrom: /* 23S rRNA (3109294..3111201(+)); 23S; 1908bp Top three genes with significant similarity: */

2009-09-01T16:30:36Z

‎23S rRNA (3109294..3111201(+)); 23S; 1908bp Top three genes with significant similarity:

← Older revision		Revision as of 16:35, 3 September 2009
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−	Ribosomal RNA ([http://en.wikipedia.org/wiki/RRNA rRNA]) is the central component of the ribosome, the protein manufacturing machinery of all living cells. The function of the rRNA is to provide a mechanism for decoding mRNA into amino acids and to interact with the tRNAs during translation by providing peptidyl transferase activity.The tRNA then brings the necessary amino acids corresponding to the appropriate mRNA codon. Archaea contains either a single rDNA operon or multiple copies of the operon.	+	<p>Ribosomal RNA ([http://en.wikipedia.org/wiki/RRNA rRNA]) is the central component of the ribosome, the protein manufacturing machinery of all living cells. The function of the rRNA is to provide a mechanism for decoding mRNA into amino acids and to interact with the tRNAs during translation by providing peptidyl transferase activity.The tRNA then brings the necessary amino acids corresponding to the appropriate mRNA codon. Archaea contains either a single rDNA operon or multiple copies of the operon. </p>

−	Archea usually contains three kinds of rRNA: 16S, 5S and 23S. 5S and 23S are part of the large ribosomal subunit, whereas 16S is part of the small robosomal unit and is responsible for recognizing the Shine-Delgarno sequences on most mRNAs. 16S is one of the most highly conserved sequences in any genome. 23S has peptidyl transferase activity and assists in binding adjacent amino acids during translation of an mRNA. Chloramphenicol acts by binding to the 23S rRNA so studying this gene in particular might explain why our species is chloramphenicol resistant.	+	<p>Archea usually contains three kinds of rRNA: 16S, 5S and 23S. 5S and 23S are part of the large ribosomal subunit, whereas 16S is part of the small robosomal unit and is responsible for recognizing the Shine-Delgarno sequences on most mRNAs. 16S is one of the most highly conserved sequences in any genome. 23S has peptidyl transferase activity and assists in binding adjacent amino acids during translation of an mRNA. Chloramphenicol acts by binding to the 23S rRNA so studying this gene in particular might explain why our species is chloramphenicol resistant. </p>

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 [[Image:315923.png]]
-== 23S rRNA 644029745; 23S; 349bp: Top three genes with significant similarity:==
+== 23S rRNA ==
 [[Image:23short1.png]]

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 [[Image:329993.png]]
-== "23S rRNA" ==
+== 23S rRNA ==
 ID Number: 644031592

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 [[Image:329993.png]]
-== 23S rRNA 644031592; 1767129..1770035 (-); 2907bp: Top three genes with significant similarity:==
+== "23S rRNA" ==
 [[Image:315921.png]]

@@ Line 59: / Line 59: @@
 [[Image:330003.png]]
-== 23S rRNA; 644032999; (3109294..3111201(+));  1908bp Top three genes with significant similarity:==
+== 23S rRNA ==
 [[Image:329991.png]]

@@ Line 46: / Line 46: @@
 ID Number: 644033000
 Location: (1..1863(+))
 Length: 1863 bp

← Older revision		Revision as of 16:31, 3 September 2009
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−	== 23S rRNA; 644033000; (1..1863(+))~~; 23S;~~ 1863 bp Top three genes with significant similarity==	+	== 23S rRNA ==
		+
		+	ID Number: 644033000
		+	Location: (1..1863(+))
		+	Length: 1863 bp
		+
		+	Top three genes with significant similarity according to BLAST:

	[[Image:330001.png]]		[[Image:330001.png]]

@@ Line 4: / Line 4: @@
-Strangely enough, All the suggested 5S rRNAs in our genome were identical, as shown in the BLAST2 comparison here:
+All the suggested 5S rRNA genes in our genome were identical, as shown in the BLAST2 comparison here:
 [[Image:Mr11.png]]
 == 5s rRNA (445..583(+); 1766895..1767033(-); 1962..2100(+)), all three consisted of 139 identical base pairs.==

@@ Line 41: / Line 41: @@
-== 23S rRNA (1..1863(+)); 23S; 1863 bp Top thee genes with significant similarity==
+== 23S rRNA; 644033000; (1..1863(+)); 23S; 1863 bp Top three genes with significant similarity==
-[[Image:23S31.png]]
+[[Image:330001.png]]
-[[Image:23S32.png]]
+[[Image:330002.png]]
-[[Image:23S33.png]]
+[[Image:330003.png]]
 == 23S rRNA; 644032999; (3109294..3111201(+));  1908bp Top three genes with significant similarity:==

@@ Line 49: / Line 49: @@
 [[Image:23S33.png]]
-== 23S rRNA (3109294..3111201(+)); 23S; 1908bp Top three genes with significant similarity:==
+== 23S rRNA; 644032999; (3109294..3111201(+));  1908bp Top three genes with significant similarity:==
-[[Image:23S21.png]]
+[[Image:329991.png]]
-[[Image:23S22.png]]
+[[Image:329992.png]]
-[[Image:23S23.png]]
+[[Image:329993.png]]
 == 23S rRNA 644031592; 1767129..1770035 (-); 2907bp: Top three genes with significant similarity:==