Time of fruit ripening - Revision history

Cadoyle at 15:53, 16 February 2013

2013-02-16T15:53:30Z

Cadoyle at 15:41, 16 February 2013

2013-02-16T15:41:31Z

Cadoyle at 15:35, 16 February 2013

2013-02-16T15:35:49Z

Cadoyle at 15:33, 16 February 2013

2013-02-16T15:33:03Z

Show changes

Cadoyle at 18:27, 14 February 2013

2013-02-14T18:27:48Z

Cadoyle at 16:00, 13 February 2013

2013-02-13T16:00:59Z

Cadoyle at 14:28, 13 February 2013

2013-02-13T14:28:05Z

Cadoyle at 14:07, 13 February 2013

2013-02-13T14:07:50Z

Cadoyle at 13:54, 13 February 2013

2013-02-13T13:54:56Z

Cadoyle at 13:37, 13 February 2013

2013-02-13T13:37:49Z

@@ Line 245: / Line 245: @@
 |-
 | ERF1/2|| Gene ID: 100248954|| [http://www.ncbi.nlm.nih.gov/gene/100248954] || Vitis vinifera || [http://www.genome.jp/kegg-bin/show_pathway?org_name=vvi&mapno=04075&mapscale=&show_description=hide]
 |}

@@ Line 41: / Line 41: @@
 With the exception of ethylene, the signaling pathways that regulate fruit ripening remain largely undefined.
 . In tomato, three pleiotropic nonripening mutants, ripening-inhibitor (rin), non-ripening (nor), and Colorless non-ripening (Cnr), have been described in which virtually all aspects of the ripening process are inhibited (Thompson and others 1999; Tigchelaar and others 1978). In these three mutants, the typical ripening-associated rise in autocatalytic ethylene synthesis is blocked due to abnormal regulation of ACS expression. It is suggested that  rin, nor, and Cnr act upstream of ethylene in the ripening cascade and determine the competency of the fruit to ripen. Therefore, genes at these three loci would be good candidates to study.
-−
 . rin Locus:
@@ Line 174: / Line 173: @@
 |-
 | AT5G50570|| Gene ID: 835126 || [http://www.ncbi.nlm.nih.gov/gene/835126] || Arabidopsis thaliana || [http://datf.cbi.pku.edu.cn/browsefamily.php?familyname=SBP]
 |-
 | FaGAST1/FaGAST2|| GenBank: GW402389.1|| [http://www.ncbi.nlm.nih.gov/nucest/GW402389] || Strawberry|| [[File: Moyano-Canete.pdf]]

@@ Line 107: / Line 107: @@
 ! Gene Name !! Accession Number !! Sequence !! Species !! Source!!
 |-
-| LEACO1 || NP_001234024.1 || [http://www.ncbi.nlm.nih.gov/protein/NP_001234024.1] || Tomato || [File:BarryandGiovannoni2007.pdf]
+| LEACO1 || NP_001234024.1 || [http://www.ncbi.nlm.nih.gov/protein/NP_001234024.1] || Tomato || [[File:BarryandGiovannoni2007.pdf]]
 |-
-| LEACS6 || AAL50559 || [http://www.ncbi.nlm.nih.gov/protein/AAL50559.1] || Tobacco || [File:BarryandGiovannoni2007.pdf]
+| LEACS6 || AAL50559 || [http://www.ncbi.nlm.nih.gov/protein/AAL50559.1] || Tobacco || [[File:BarryandGiovannoni2007.pdf]]
 |-
-| LEACS4 || AF548375 || [http://www.ncbi.nlm.nih.gov/nuccore/AF548375.1] || Tomato || [File:BarryandGiovannoni2007.pdf]
+| LEACS4 || AF548375 || [http://www.ncbi.nlm.nih.gov/nuccore/AF548375.1] || Tomato || [[File:BarryandGiovannoni2007.pdf]]
 |-
-| LEACS2 || NM_001247249 || [http://www.ncbi.nlm.nih.gov/nuccore/NM_001247249.1] || Tomato || [File:Giovannoni2004.pdf]
+| LEACS2 || NM_001247249 || [http://www.ncbi.nlm.nih.gov/nuccore/NM_001247249.1] || Tomato || [[File:Giovannoni2004.pdf]]
 |-
-| LEACS1A || 544028 || [http://www.ncbi.nlm.nih.gov/gene/?term=LEACS1A] || Tomato || File:Giovannoni2004.pdf]
+| LEACS1A || 544028 || [http://www.ncbi.nlm.nih.gov/gene/?term=LEACS1A] || Tomato || [[File:Giovannoni2004.pdf]]
 |-
-| LeMADS-MC || AF448521 || [http://www.ncbi.nlm.nih.gov/nuccore/20219013] || Tomato || [File:Giovannoni2004.pdf]
+| LeMADS-MC || AF448521 || [http://www.ncbi.nlm.nih.gov/nuccore/20219013] || Tomato || [[File:Giovannoni2004.pdf]]
 |-
-| TDR4 || NM_001247614  || [http://www.ncbi.nlm.nih.gov/nuccore/NM_001247614.1] || Tomato|| [File:Giovannoni2004.pdf]
+| TDR4 || NM_001247614  || [http://www.ncbi.nlm.nih.gov/nuccore/NM_001247614.1] || Tomato|| [[File:Giovannoni2004.pdf]]
 |-
-| TDR6 || X60759 || [http://www.ncbi.nlm.nih.gov/nuccore/X60759.1] || Tomato || [File:Giovannoni2004.pdf]
+| TDR6 || X60759 || [http://www.ncbi.nlm.nih.gov/nuccore/X60759.1] || Tomato || [[File:Giovannoni2004.pdf]]
 |-
-| TAG1 || AAP35239|| [http://www.ncbi.nlm.nih.gov/protein/AAP35239.1] || Tomato || [File:Giovannoni2004.pdf]
+| TAG1 || AAP35239|| [http://www.ncbi.nlm.nih.gov/protein/AAP35239.1] || Tomato || [[File:Giovannoni2004.pdf]]
 |-
-| TC12359/TM29 || NP_001233911 || [http://www.ncbi.nlm.nih.gov/protein/NP_001233911.1] || Tomato || [File:Giovannoni2004.pdf]
+| TC12359/TM29 || NP_001233911 || [http://www.ncbi.nlm.nih.gov/protein/NP_001233911.1] || Tomato || [[File:Giovannoni2004.pdf]]
 |-
-| TC117868|| GenBank: DN996489.1|| [http://www.ncbi.nlm.nih.gov/nucest/66256316] || Tomato || [File:Giovannoni2004.pdf]
+| TC117868|| GenBank: DN996489.1|| [http://www.ncbi.nlm.nih.gov/nucest/66256316] || Tomato || [[File:Giovannoni2004.pdf]]
 |-
-| TC124330 || GenBank: DR001784.1|| [http://www.ncbi.nlm.nih.gov/nucest/66261657] || Tomato || [File:Giovannoni2004.pdf]
+| TC124330 || GenBank: DR001784.1|| [http://www.ncbi.nlm.nih.gov/nucest/66261657] || Tomato || [[File:Giovannoni2004.pdf]]
 |-
-| Ap1 or LeAP1|| Gene: 543886 GeneBank: AY306154.1|| [http://www.ncbi.nlm.nih.gov/nuccore/32478032] || Tomato || [File:Giovannoni2004.pdf]
+| Ap1 or LeAP1|| Gene: 543886 GeneBank: AY306154.1|| [http://www.ncbi.nlm.nih.gov/nuccore/32478032] || Tomato || [[File:Giovannoni2004.pdf]]
 |-
-| FUL  || GeneBank: NC_012020.3 Gene ID: 100232953|| [http://www.ncbi.nlm.nih.gov/gene/100232953] || grape || [File:Giovannoni2004.pdf]
+| FUL  || GeneBank: NC_012020.3 Gene ID: 100232953|| [http://www.ncbi.nlm.nih.gov/gene/100232953] || grape || [[File:Giovannoni2004.pdf]]
 |-
-| AGL3/SEP4|| Gene ID: 814898 || [http://www.ncbi.nlm.nih.gov/gene/814898] || Arabidopsis thaliana || [File:Giovannoni2004.pdf]
+| AGL3/SEP4|| Gene ID: 814898 || [http://www.ncbi.nlm.nih.gov/gene/814898] || Arabidopsis thaliana || [[File:Giovannoni2004.pdf]]
 |-
-| TM29|| Gene ID: 543770 || [http://www.ncbi.nlm.nih.gov/gene/?term=TM29] || Tomato || [File:Giovannoni2004.pdf]
+| TM29|| Gene ID: 543770 || [http://www.ncbi.nlm.nih.gov/gene/?term=TM29] || Tomato || [[File:Giovannoni2004.pdf]]
 |-
-| SEP1 || 831436|| [http://www.ncbi.nlm.nih.gov/gene/831436] || Arabidopsis thaliana || [File:Giovannoni2004.pdf]
+| SEP1 || 831436|| [http://www.ncbi.nlm.nih.gov/gene/831436] || Arabidopsis thaliana || [[File:Giovannoni2004.pdf]]
 |-
-| SEP2 || 821151 || [http://www.ncbi.nlm.nih.gov/gene/821151] || Arabidopsis thaliana || [File:Giovannoni2004.pdf]
+| SEP2 || 821151 || [http://www.ncbi.nlm.nih.gov/gene/821151] || Arabidopsis thaliana || [[File:Giovannoni2004.pdf]]
 |-
-| SEP3|| Gene ID: 839040 || [http://www.ncbi.nlm.nih.gov/gene/839040] || Arabidopsis thaliana || [File:Giovannoni2004.pdf]
+| SEP3|| Gene ID: 839040 || [http://www.ncbi.nlm.nih.gov/gene/839040] || Arabidopsis thaliana || [[File:Giovannoni2004.pdf]]
 |-
 | AT1G02065/SPL8|| Gene ID: 839275 || [http://www.ncbi.nlm.nih.gov/gene/?term=AT1G02065] || Arabidopsis thaliana || [http://datf.cbi.pku.edu.cn/browsefamily.php?familyname=SBP]
@@ Line 233: / Line 233: @@
 | FAN R110b|| GenBank: AF041408.1 || [http://www.ncbi.nlm.nih.gov/nucest/3293293?report=genbank] || Strawberry || [[File:Manning1998.pdf]]
 |-
-| E4|| Gene ID: 544026 || [http://www.ncbi.nlm.nih.gov/gene/544026] || Tomato || [File:BarryandGiovannoni2007.pdf]
+| E4|| Gene ID: 544026 || [http://www.ncbi.nlm.nih.gov/gene/544026] || Tomato || [[File:BarryandGiovannoni2007.pdf]]
 |-
-| CTR1|| Gene ID: 100247516 || [http://www.ncbi.nlm.nih.gov/gene/100247516] || Vitis vinifera || KEGG
+| CTR1|| Gene ID: 100247516 || [http://www.ncbi.nlm.nih.gov/gene/100247516] || Vitis vinifera || [http://www.genome.jp/kegg-bin/show_pathway?org_name=vvi&mapno=04075&mapscale=&show_description=hide]
 |-
-| ETR1|| Gene ID: 100232863 || http://www.ncbi.nlm.nih.gov/gene/100232863 || Vitis vinifera || KEGG
+| ETR1|| Gene ID: 100232863 || http://www.ncbi.nlm.nih.gov/gene/100232863 || Vitis vinifera || [http://www.genome.jp/kegg-bin/show_pathway?org_name=vvi&mapno=04075&mapscale=&show_description=hide]
 |-
-| MPK6|| Gene ID: 818982 || [http://www.ncbi.nlm.nih.gov/gene/818982] || Arabidopsis thaliana|| KEGG
+| MPK6|| Gene ID: 818982 || [http://www.ncbi.nlm.nih.gov/gene/818982] || Arabidopsis thaliana|| [http://www.genome.jp/kegg-bin/show_pathway?org_name=vvi&mapno=04075&mapscale=&show_description=hide]
 |-
-| EIN2|| NC_003076 || [http://www.ncbi.nlm.nih.gov/nuccore/NC_003076.8 ]|| Arabidopsis thaliana || KEGG
+| EIN2|| NC_003076 || [http://www.ncbi.nlm.nih.gov/nuccore/NC_003076.8 ]|| Arabidopsis thaliana || [http://www.genome.jp/kegg-bin/show_pathway?org_name=vvi&mapno=04075&mapscale=&show_description=hide]
 |-
-| EBF1/2|| Gene ID: 817087 || [http://www.ncbi.nlm.nih.gov/gene/817087] || V Arabidopsis thaliana || KEGG
+| EBF1/2|| Gene ID: 817087 || [http://www.ncbi.nlm.nih.gov/gene/817087] || V Arabidopsis thaliana || [http://www.genome.jp/kegg-bin/show_pathway?org_name=vvi&mapno=04075&mapscale=&show_description=hide]
 |-
-| EIN3|| Gene ID: 100241300 || [http://www.ncbi.nlm.nih.gov/gene/100241300] || Vitis vinifera || KEGG
+| EIN3|| Gene ID: 100241300 || [http://www.ncbi.nlm.nih.gov/gene/100241300] || Vitis vinifera || [http://www.genome.jp/kegg-bin/show_pathway?org_name=vvi&mapno=04075&mapscale=&show_description=hide]
 |-
-| ERF1/2|| Gene ID: 100248954|| [http://www.ncbi.nlm.nih.gov/gene/100248954] || Vitis vinifera || KEGG
+| ERF1/2|| Gene ID: 100248954|| [http://www.ncbi.nlm.nih.gov/gene/100248954] || Vitis vinifera || [http://www.genome.jp/kegg-bin/show_pathway?org_name=vvi&mapno=04075&mapscale=&show_description=hide]
 |}

@@ Line 115: / Line 115: @@
 | LEACS2 || NM_001247249 || [http://www.ncbi.nlm.nih.gov/nuccore/NM_001247249.1] || Tomato || Example
 |-
-| LEACS1A || Example || Example || Example || Example
+| LEACS1A || 544028 || [http://www.ncbi.nlm.nih.gov/gene/?term=LEACS1A] || Tomato || Example
 |-
 | LeMADS-MC || AF448521 || [http://www.ncbi.nlm.nih.gov/nuccore/20219013] || Tomato || Example
@@ Line 127: / Line 127: @@
 | TC12359/TM29 || NP_001233911 || [http://www.ncbi.nlm.nih.gov/protein/NP_001233911.1] || Tomato || Example
 |-
-| TC117868|| Example || Example || Example || Example
+| TC117868|| ESTs only || Example || Tomato || Example
 |-
-| TC124330 || Example || Example || Example || Example
+| TC124330 || ESTs only || Example || Tomato || Example
 |-
 | SEP29 || Example || Example || Example || Example
@@ Line 135: / Line 135: @@
 | LEMEMADS || Example || Example || Example || Example
 |-
-| Ap1 || Example || Example || Example || Example
+| Ap1 or LeAP1|| Gene: 543886 GeneBank: AY306154.1|| [http://www.ncbi.nlm.nih.gov/nuccore/32478032] || Tomato || Example
 |-
-| FUL || Example || Example || Example || Example
+| FUL  || GeneBank: NC_012020.3 Gene ID: 100232953|| [http://www.ncbi.nlm.nih.gov/gene/100232953] || grape || Example
 |-
-| AGL3|| Example || Example || Example || Example
+| AGL3/SEP4|| Gene ID: 814898 || [http://www.ncbi.nlm.nih.gov/gene/814898] || Arabidopsis thaliana || Example
 |-
 | LeMADS-RN || Example || Example || Example || Example

@@ Line 111: / Line 111: @@
 | LEACS6 || AAL50559 || [http://www.ncbi.nlm.nih.gov/protein/AAL50559.1] || Tobacco || Example
 |-
-| LEACS4 || AF548375 || [http://www.ncbi.nlm.nih.gov/nuccore/AF548375.1] || Example || Example
+| LEACS4 || AF548375 || [http://www.ncbi.nlm.nih.gov/nuccore/AF548375.1] || Tomato || Example
 |-
-| LEACS2 || NM_001247249 || [http://www.ncbi.nlm.nih.gov/nuccore/NM_001247249.1] || Example || Example
+| LEACS2 || NM_001247249 || [http://www.ncbi.nlm.nih.gov/nuccore/NM_001247249.1] || Tomato || Example
 |-
 | LEACS1A || Example || Example || Example || Example
 |-
-| LeMADS-MC || AF448521 || [http://www.ncbi.nlm.nih.gov/nuccore/20219013] || Example || Example
+| LeMADS-MC || AF448521 || [http://www.ncbi.nlm.nih.gov/nuccore/20219013] || Tomato || Example
 |-
-| TDR4 || NM_001247614  || [http://www.ncbi.nlm.nih.gov/nuccore/NM_001247614.1] || Example || Example
+| TDR4 || NM_001247614  || [http://www.ncbi.nlm.nih.gov/nuccore/NM_001247614.1] || Tomato|| Example
 |-
-| TDR6 || Example || Example || Example || Example
+| TDR6 || X60759 || [http://www.ncbi.nlm.nih.gov/nuccore/X60759.1] || Tomato || Example
 |-
-| TAG1 || Example || Example || Example || Example
+| TAG1 || AAP35239|| [http://www.ncbi.nlm.nih.gov/protein/AAP35239.1] || Tomato || Example
 |-
-| TC12359/TM29 || Example || Example || Example || Example
+| TC12359/TM29 || NP_001233911 || [http://www.ncbi.nlm.nih.gov/protein/NP_001233911.1] || Tomato || Example
 |-
 | TC117868|| Example || Example || Example || Example
@@ Line 147: / Line 147: @@
 | TM29|| Example || Example || Example || Example
 |-
-| SEP1 || Example || Example || Example || Example
+| SEP1 || 831436|| [http://www.ncbi.nlm.nih.gov/gene/831436] || Arabidopsis thaliana || Example
 |-
 | SEP2 || Example || Example || Example || Example

@@ Line 188: / Line 188: @@
 |-
 | AT5G0670|| Example || Example || Example || Example
 |}

← Older revision		Revision as of 13:54, 13 February 2013
Line 101:		Line 101:

	7. ethylene-responsive transcription factor 1 NCBI-GI: 225437872 NCBI-GeneID: 100246426 UniProt: F6HZJ0		7. ethylene-responsive transcription factor 1 NCBI-GI: 225437872 NCBI-GeneID: 100246426 UniProt: F6HZJ0
		+
		+
		+	{\| class="wikitable"
		+	\|-
		+	! Gene Name !! Accession Number !! Sequence !! Species !! Source!!
		+	\|-
		+	\| LEACO1 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| LEACO3\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| LEACO4 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| LEACS6 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| LEACS4 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| LEACS2 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| LEACS1A \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| LeMADS-MC \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| TDR4 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| TDR6 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| TAG1 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| TC12359/TM29 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| TC117868\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| TC124330 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| SEP29 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| LEMEMADS \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| Ap1 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| FUL \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AGL3\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| LeMADS-RN \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| A1486089 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| TM29\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| SEP1 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| SEP2 \|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| SEP3\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT1G02065\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT1G20980\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT1G27360\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT1G27370\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT1G53160\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT1G69170\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT2G33810\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT2G42200\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT2G47070\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT3G15270\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT3G57920\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT3G60030\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT5G18830\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT5G43270\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT5G50570\|\| Example \|\| Example \|\| Example \|\| Example
		+	\|-
		+	\| AT5G0670\|\| Example \|\| Example \|\| Example \|\| Example
		+
		+	\|}

← Older revision		Revision as of 13:37, 13 February 2013
Line 2:		Line 2:


−	'''Ethylene and Fruit Ripening''' All information from ([[BarryandGiovannoni2007.pdf]])	+	'''Ethylene and Fruit Ripening''' All information from ([[File:BarryandGiovannoni2007.pdf]])

	Fruits have a great diversity, but aspects of ripening between fleshy fruits are often conserved. Ripening is associated the color change, altered sugar metabolism, softening, aroma, and in increased susceptibility to pathogen infection. Therefore, genetic mechanism that underly these processes may be conserved between species.		Fruits have a great diversity, but aspects of ripening between fleshy fruits are often conserved. Ripening is associated the color change, altered sugar metabolism, softening, aroma, and in increased susceptibility to pathogen infection. Therefore, genetic mechanism that underly these processes may be conserved between species.