Difference between revisions of "Mycobacterium phage Virus Hit from Spacer 5 in Crispr Two: Blast Alignment to Other Halophiles"
From GcatWiki
Karicheson (talk | contribs) |
Karicheson (talk | contribs) |
||
| (10 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
Accession Number of this Virus= GQ303259 | Accession Number of this Virus= GQ303259 | ||
| − | '''What species does this virus | + | '''What species does this virus infect? Blastn against nr/nt database. . . |
| + | [[Image:virus31.jpg]] | ||
| + | [[Image:virus32.jpg]] | ||
| − | + | [[Image:virus33.jpg]] | |
| − | + | [[Image:virus34.jpg]] | |
| − | + | [[Image:virus35.jpg]] | |
| − | |||
| − | |||
| − | + | Blasted viral genome against our genome and got no hits within spacers!!!!!!!!!!!!??????????? | |
| + | '''Blasted against other halophiles''' to determine if other halophiles have segments of this viral genome in its spacers and genome in general. . . | ||
| − | - | + | didnt accept any e-value above 0.009 |
| − | + | Halorhabdus utahensis: Accession number determined from NCBI: NC_013158.1 | |
| − | |||
| − | |||
| − | |||
| − | + | [[Image:virus3HU.jpg]] | |
---- | ---- | ||
| − | + | Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364 | |
| + | [[Image:virus3HS1.jpg]] | ||
| + | [[Image:virus3HS2.jpg]] | ||
---- | ---- | ||
| − | + | [[Haloarcula vallismortis Blasting Results for Virus 3]] | |
| + | G6T95YBR113 | ||
---- | ---- | ||
| − | + | [[Haloarcula sinaiiensis Blasting Results for Virus 3]] | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | + | CONCLUSION: this virus did not insert into this species' spacers | |
Latest revision as of 05:30, 18 November 2009
Accession Number of this Virus= GQ303259
What species does this virus infect? Blastn against nr/nt database. . .
Blasted viral genome against our genome and got no hits within spacers!!!!!!!!!!!!???????????
Blasted against other halophiles to determine if other halophiles have segments of this viral genome in its spacers and genome in general. . .
didnt accept any e-value above 0.009
Halorhabdus utahensis: Accession number determined from NCBI: NC_013158.1
Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364
Haloarcula vallismortis Blasting Results for Virus 3
G6T95YBR113
Haloarcula sinaiiensis Blasting Results for Virus 3
CONCLUSION: this virus did not insert into this species' spacers
