Difference between revisions of "Time of bloom"
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===Genes Involved=== | ===Genes Involved=== | ||
− | {| | + | {| {{table}} |
+ | | align="center"|'''Abbreviation''' | ||
+ | | align="center"|'''Name''' | ||
+ | | align="center"|'''DNA Sequence Available At:''' | ||
|- | |- | ||
− | + | | AG||Agamous||[http://www.ncbi.nlm.nih.gov/gene/827631 NCBI] | |
|- | |- | ||
− | + | | AGL19||Agamous-Like 19||[http://www.ncbi.nlm.nih.gov/gene/829950 NCBI] | |
− | | | ||
|- | |- | ||
− | + | | AGL24||Agamous-Like 24||[http://www.ncbi.nlm.nih.gov/gene/828556 NCBI] | |
− | | | ||
|- | |- | ||
− | + | | AP1||Apetala 1||[http://www.ncbi.nlm.nih.gov/gene/843244 NCBI] | |
− | | | ||
|- | |- | ||
− | + | | AP2||Apetala 2||[http://www.ncbi.nlm.nih.gov/gene/829845 NCBI] | |
− | |||
|- | |- | ||
− | + | | AP3||Apetala 3||[http://www.ncbi.nlm.nih.gov/gene/9312320 NCBI] | |
− | |||
|- | |- | ||
− | + | | ARP6||Actin-Related Protein 6 ||[http://www.ncbi.nlm.nih.gov/gene/823150 NCBI] | |
− | |||
|- | |- | ||
− | + | | ART1||Aerial Rosette 1||Amino Acid Sequence [http://www.uniprot.org/uniprot/Q9XER9 UniProt] | |
− | |||
|- | |- | ||
− | + | | CAL||Cauliflower||[http://www.ncbi.nlm.nih.gov/gene/839172 NCBI] | |
− | | | ||
|- | |- | ||
− | + | | CCA1||Circadian Clock Associated 1||[http://www.ncbi.nlm.nih.gov/gene/819296 NCBI] | |
− | |||
|- | |- | ||
− | + | | CLF||Curly Leaf||[http://www.ncbi.nlm.nih.gov/gene/816870 NCBI] | |
− | |||
|- | |- | ||
− | + | | CO||Constans||[http://www.ncbi.nlm.nih.gov/gene/831441 NCBI] | |
− | |||
|- | |- | ||
− | + | | CRY1||Cryptochrome 1||[http://www.ncbi.nlm.nih.gov/gene/826470 NCBI] | |
− | | | ||
|- | |- | ||
− | + | | CRY2||Cryptochrome 2||[http://www.ncbi.nlm.nih.gov/gene/839529 NCBI] | |
− | | | ||
|- | |- | ||
− | + | | CRY3||Cryptochrome 3||[http://www.ncbi.nlm.nih.gov/gene/832554 NCBI] | |
− | | | ||
|- | |- | ||
− | + | | EBS||Early Bolting in Short Days||[http://www.ncbi.nlm.nih.gov/gene/828303 NCBI] | |
− | | | ||
|- | |- | ||
− | + | | EFS||Early Flowering in Short Days||[http://www.ncbi.nlm.nih.gov/gene/844066 NCBI] | |
− | | | + | |- |
+ | | ELF3||Early Flowering 3||[http://www.ncbi.nlm.nih.gov/gene/817134 NCBI] | ||
+ | |- | ||
+ | | ELF4||Early Flowering 4||[http://www.ncbi.nlm.nih.gov/gene/818596 NCBI] | ||
+ | |- | ||
+ | | ELF7||Early Flowering 7||[http://www.ncbi.nlm.nih.gov/gene/844312 NCBI] | ||
+ | |- | ||
+ | | ELF8||Early Flowering 8||[http://www.ncbi.nlm.nih.gov/gene/815177 NCBI] | ||
+ | |- | ||
+ | | EMF1||Embryonic Flower 1||[http://www.ncbi.nlm.nih.gov/gene/831025 NCBI] | ||
+ | |- | ||
+ | | EMF2||Embryonic Flower 2||[http://www.ncbi.nlm.nih.gov/gene/835198 NCBI] | ||
+ | |- | ||
+ | | ESD4||Early Under Short Days 4||[http://www.ncbi.nlm.nih.gov/gene/827269 NCBI] | ||
+ | |- | ||
+ | | FCA||Flowering Time Control Alpha||[http://www.ncbi.nlm.nih.gov/gene/827323 NCBI] | ||
+ | |- | ||
+ | | FD||FD||[http://www.ncbi.nlm.nih.gov/gene/829744 NCBI] | ||
+ | |- | ||
+ | | FES1||Frigida-Essential 1||[http://www.ncbi.nlm.nih.gov/gene/817951 NCBI] | ||
+ | |- | ||
+ | | FIE||Fertilization-Independent Endosperm||[http://www.ncbi.nlm.nih.gov/gene/821622 NCBI] | ||
+ | |- | ||
+ | | FKF1||Flavin-Binding/Kelch Repeat||[http://www.ncbi.nlm.nih.gov/gene/843133 NCBI] | ||
+ | |- | ||
+ | | FLC||Flowering Locus C||[http://www.ncbi.nlm.nih.gov/gene/830878 NCBI] | ||
+ | |- | ||
+ | | FLD||Flowering Locus D||[http://www.ncbi.nlm.nih.gov/gene/820202 NCBI] | ||
+ | |- | ||
+ | | FLK||Flowering Locus K||[http://www.ncbi.nlm.nih.gov/gene/819619 NCBI] | ||
+ | |- | ||
+ | | FLM/MAF1/AGL27||Flowering Locus M||[http://www.ncbi.nlm.nih.gov/gene/844042 NCBI] | ||
+ | |- | ||
+ | | FPA||Flowing Time Control||[http://www.ncbi.nlm.nih.gov/gene/818942 NCBI] | ||
+ | |- | ||
+ | | FRI||Frigida-Like||[http://www.ncbi.nlm.nih.gov/gene/828044 NCBI] | ||
+ | |- | ||
+ | | FRL1||Frigida-Like 1||[http://www.ncbi.nlm.nih.gov/gene/831493 NCBI] | ||
+ | |- | ||
+ | | FRL2||Frigida-Like 2||[http://www.ncbi.nlm.nih.gov/gene/840070 NCBI] | ||
+ | |- | ||
+ | | FT||Flowering Locus T||[http://www.ncbi.nlm.nih.gov/gene/842859 NCBI] | ||
+ | |- | ||
+ | | FUL/AGL8||Fruitfull||[http://www.ncbi.nlm.nih.gov/gene/836212 NCBI] | ||
+ | |- | ||
+ | | FVE||Nucleosome/Chromatin Assembly Factor Group C||[http://www.ncbi.nlm.nih.gov/gene/816471 NCBI] | ||
+ | |- | ||
+ | | FY||Flowing Time Control||[http://www.ncbi.nlm.nih.gov/gene/831191 NCBI] | ||
+ | |- | ||
+ | | GAI||Gibberellic Acid Insensitive||[http://www.ncbi.nlm.nih.gov/gene/838057 NCBI] | ||
+ | |- | ||
+ | | GI||Gigantea||[http://www.ncbi.nlm.nih.gov/gene/838883 NCBI] | ||
+ | |- | ||
+ | | Hd1||Histone Deacetylase 1||[http://www.ncbi.nlm.nih.gov/gene/829969 NCBI] | ||
+ | |- | ||
+ | | LD||Luminidependens||[http://www.ncbi.nlm.nih.gov/gene/827904 NCBI] | ||
+ | |- | ||
+ | | LFR||Leaf and Flower Related||[http://www.ncbi.nlm.nih.gov/gene/821873 NCBI] | ||
+ | |- | ||
+ | | LFY||Leafy||[http://www.ncbi.nlm.nih.gov/gene/836307 NCBI] | ||
+ | |- | ||
+ | | LHP1||Like Heterochromatin Protein 1||[http://www.ncbi.nlm.nih.gov/gene/831635 NCBI] | ||
+ | |- | ||
+ | | LHY||Late Elongated Hypocotyl||[http://www.ncbi.nlm.nih.gov/gene/839341 NCBI] | ||
+ | |- | ||
+ | | LMI1||Late Meristem Identity 1||[http://www.ncbi.nlm.nih.gov/gene/831723 NCBI] | ||
+ | |- | ||
+ | | LUG||Leunig||[http://www.ncbi.nlm.nih.gov/gene/829390 NCBI] | ||
+ | |- | ||
+ | | MAF2/AGL31||MADS Affecting Flowering 2||[http://www.ncbi.nlm.nih.gov/gene/836629 NCBI] | ||
+ | |- | ||
+ | | MAF3||MADS Affecting Flowering 3||[http://www.ncbi.nlm.nih.gov/gene/836630 NCBI] | ||
+ | |- | ||
+ | | MAF4||MADS Affecting Flowering 4||[http://www.ncbi.nlm.nih.gov/gene/836631 NCBI] | ||
+ | |- | ||
+ | | MAF5||MADS Affecting Flowering 5||[http://www.ncbi.nlm.nih.gov/gene/836632 NCBI] | ||
+ | |- | ||
+ | | MIR172A||MicroRNA 172 A||[http://www.ncbi.nlm.nih.gov/gene/3768120 NCBI] | ||
+ | |- | ||
+ | | MIR172B||MicroRNA 172 B||[http://www.ncbi.nlm.nih.gov/gene/3770659 NCBI] | ||
+ | |- | ||
+ | | PAF1||Proteasome Subunit Alpha||[http://www.ncbi.nlm.nih.gov/gene/834290 NCBI] | ||
+ | |- | ||
+ | | PFT1||Phytochrome and Flowering Time 1||[http://www.ncbi.nlm.nih.gov/gene/839141 NCBI] | ||
+ | |- | ||
+ | | PHYA||Phytochrome A||[http://www.ncbi.nlm.nih.gov/gene/837483 NCBI] | ||
+ | |- | ||
+ | | PHYB||Phytochrome B||[http://www.ncbi.nlm.nih.gov/gene/816394 NCBI] | ||
+ | |- | ||
+ | | PHYC||Phytochrome C||[http://www.ncbi.nlm.nih.gov/gene/833570 NCBI] | ||
+ | |- | ||
+ | | PHYE||Phytochrome E||[http://www.ncbi.nlm.nih.gov/gene/827538 NCBI] | ||
+ | |- | ||
+ | | PI||Pistillata||[http://www.ncbi.nlm.nih.gov/gene/832146 NCBI] | ||
+ | |- | ||
+ | | PIE1||Photoperiod-Independent Early Flowering 1||[http://www.ncbi.nlm.nih.gov/gene/820463 NCBI] | ||
+ | |- | ||
+ | | PIF4||Phytochrome Interacting Factor 4||[http://www.ncbi.nlm.nih.gov/gene/818903 NCBI] | ||
+ | |- | ||
+ | | PNF||Pound-Foolish||[http://www.ncbi.nlm.nih.gov/gene/817343 NCBI] | ||
+ | |- | ||
+ | | PNY||Pennywise||[http://www.ncbi.nlm.nih.gov/gene/831745 NCBI] | ||
+ | |- | ||
+ | | RGA||Repressor of GA||[http://www.ncbi.nlm.nih.gov/gene/814686 NCBI] | ||
+ | |- | ||
+ | | SAP18||SIN3 Associated Polypeptide P18||[http://www.ncbi.nlm.nih.gov/gene/819172 NCBI] | ||
+ | |- | ||
+ | | SEP3||Sepallata||[http://www.ncbi.nlm.nih.gov/gene/839040 NCBI] | ||
+ | |- | ||
+ | | SEU||Seuss||[http://www.ncbi.nlm.nih.gov/gene/840981 NCBI] | ||
+ | |- | ||
+ | | SMZ||Schlafmutze||[http://www.ncbi.nlm.nih.gov/gene/824664 NCBI] | ||
+ | |- | ||
+ | | SNZ||Schnarchzapfen||[http://www.ncbi.nlm.nih.gov/gene/818510 NCBI] | ||
+ | |- | ||
+ | | SOC1/AGL20||Supressor of Overexpression of Constans 1||[http://www.ncbi.nlm.nih.gov/gene/819174 NCBI] | ||
+ | |- | ||
+ | | SPL3||Squamosa Promoter-Binding-Like Protein 3||[http://www.ncbi.nlm.nih.gov/gene/817948 NCBI] | ||
+ | |- | ||
+ | | SPL9||Squamosa Promoter-Binding-Like Protein 9||[http://www.ncbi.nlm.nih.gov/gene/818820 NCBI] | ||
+ | |- | ||
+ | | SPY||Spindly||[http://www.ncbi.nlm.nih.gov/gene/820327 NCBI] | ||
+ | |- | ||
+ | | STM||Shoot Meristemless||[http://www.ncbi.nlm.nih.gov/gene/842534 NCBI] | ||
+ | |- | ||
+ | | SVP/AGL22||Short Vegetative Phase||[http://www.ncbi.nlm.nih.gov/gene/816787 NCBI] | ||
+ | |- | ||
+ | | SYD||Splayed||[http://www.ncbi.nlm.nih.gov/gene/817375 NCBI] | ||
+ | |- | ||
+ | | TEM1||Tempranillo 1||[http://www.ncbi.nlm.nih.gov/gene/839143 NCBI] | ||
+ | |- | ||
+ | | TEM2||Tempranillo 2||[http://www.ncbi.nlm.nih.gov/gene/843216 NCBI] | ||
+ | |- | ||
+ | | TFL1||Terminal Flower 1||[http://www.ncbi.nlm.nih.gov/gene/831683 NCBI] | ||
+ | |- | ||
+ | | TFL2||Terminal Flower 2||[http://www.ncbi.nlm.nih.gov/gene/831635 NCBI] | ||
+ | |- | ||
+ | | TOC1||Timing of CAB Expression||[http://www.ncbi.nlm.nih.gov/gene/836259 NCBI] | ||
+ | |- | ||
+ | | TOE1||Target of EAT 1||[http://www.ncbi.nlm.nih.gov/gene/817403 NCBI] | ||
+ | |- | ||
+ | | TOE2||Target of EAT 2||[http://www.ncbi.nlm.nih.gov/gene/836134 NCBI] | ||
+ | |- | ||
+ | | TOE3||Target of EAT 3||[http://www.ncbi.nlm.nih.gov/gene/836853 NCBI] | ||
+ | |- | ||
+ | | TSF||Twin Sister of FT||[http://www.ncbi.nlm.nih.gov/gene/827785 NCBI] | ||
+ | |- | ||
+ | | UFO||Unusual Floral Organs||[http://www.ncbi.nlm.nih.gov/gene/839982 NCBI] | ||
+ | |- | ||
+ | | VIN3||Vernalization Insensitive 3||[http://www.ncbi.nlm.nih.gov/gene/835844 NCBI] | ||
+ | |- | ||
+ | | VIP||Vernalization Independence||[http://www.ncbi.nlm.nih.gov/gene/26893 NCBI] | ||
+ | |- | ||
+ | | VIP3||Vernalization Independence 3||[http://www.ncbi.nlm.nih.gov/gene/829105 NCBI] | ||
+ | |- | ||
+ | | VIP4||Vernalization Independence 4||[http://www.ncbi.nlm.nih.gov/gene/836236 NCBI] | ||
+ | |- | ||
+ | | VRN1||Vernalization 1||[http://www.ncbi.nlm.nih.gov/gene/821432 NCBI] | ||
+ | |- | ||
+ | | VRN2||Vernalization 2||[http://www.ncbi.nlm.nih.gov/gene/827392 NCBI] | ||
+ | |- | ||
+ | | ZTL||Zeitlupe||[http://www.ncbi.nlm.nih.gov/gene/835842 NCBI] | ||
|} | |} |
Revision as of 05:56, 13 February 2013
Contents
Total Genes
AG AGL19 AGL24 AP1 AP2 AP3 ARP6 ART1 CAL CCA1 CLF CO CRY CRY2 CRY3 EBS EFS ELF3 ELF4 ELF7 ELF8 EMF1 EMF2 ESD4 FCA FD FES1 FIE FKF1 FLC FLD FLK FLM/MAF1/AGL27 FPA FRI FRL1 FRL2 FT FUL FVE FY GAI GI Hd1 LD LFR LFY LHP1 LHY LMI1 LUG MAF2/AGL31 MAF3 MAF4 MAF5 MIR172A MIR172B PAF1 PFT1 PHYA PHYB PHYC PHYE PI PIE1 PIF4 PNF PNY RGA SAP18 SEP3 SEU SMZ SNZ SOC1/AGL20 SPL3 SPL9 SPY STM SVP/AGL22 SYD TEM1 TEM2 TFL1 TFL2 TOC1 TOE1 TOE2 TOE3 TSF UFO VIN3 VIP VIP3 VIP4 VRN1 VRN2 ZTL
Overall Pathway
Pathway 1; Pathway 2; Pathway 3; Pathway 4; Pathway 5; Pathway 6; Pathway 7; Pathway 8; Pathway 9; Pathway 10; Pathway 11; Pathway 12; Pathway 13; Pathway 14; Pathway 15; Pathway 16; Pathway 17; Pathway 18; Pathway 19
Flower Meristem Identity
Primary Genes: Agamous, Apetala1, Apetala2, Cauliflower, Fruitfull, Leafy, Unusual Floral Organs Henderson and Dean, 2004 UC San Diego Mizukami and Ma, 1997
Other Genes: Apetala3, Pistillata
Purpose: These genes "control the identity that a meristem will adopt. These meristem identity genes are activated in response to developmental and environmental cues ... [and are essentially the] master regulators that control the entire floral initiation process." Pidkowich et al., 1999
Floral Pathway Integrators
Primary Genes: Flowering Locus T, Leafy, Supressor of Overexpression of Constans1 Henderson and Dean, 2004
Other Genes: FD (bZIP transcription factor), Twin Sister of FT Abe et al., 2005 Yamaguchi et al., 2005
Purpose: "The multiple pathways quantitatively regulate an overlapping set of common targets, the floral pathway integrators, whose activities convert the shoot apical meristem to a reproductive fate." Boss et al., 2004
Genes Involved
Abbreviation | Name | DNA Sequence Available At: |
AG | Agamous | NCBI |
AGL19 | Agamous-Like 19 | NCBI |
AGL24 | Agamous-Like 24 | NCBI |
AP1 | Apetala 1 | NCBI |
AP2 | Apetala 2 | NCBI |
AP3 | Apetala 3 | NCBI |
ARP6 | Actin-Related Protein 6 | NCBI |
ART1 | Aerial Rosette 1 | Amino Acid Sequence UniProt |
CAL | Cauliflower | NCBI |
CCA1 | Circadian Clock Associated 1 | NCBI |
CLF | Curly Leaf | NCBI |
CO | Constans | NCBI |
CRY1 | Cryptochrome 1 | NCBI |
CRY2 | Cryptochrome 2 | NCBI |
CRY3 | Cryptochrome 3 | NCBI |
EBS | Early Bolting in Short Days | NCBI |
EFS | Early Flowering in Short Days | NCBI |
ELF3 | Early Flowering 3 | NCBI |
ELF4 | Early Flowering 4 | NCBI |
ELF7 | Early Flowering 7 | NCBI |
ELF8 | Early Flowering 8 | NCBI |
EMF1 | Embryonic Flower 1 | NCBI |
EMF2 | Embryonic Flower 2 | NCBI |
ESD4 | Early Under Short Days 4 | NCBI |
FCA | Flowering Time Control Alpha | NCBI |
FD | FD | NCBI |
FES1 | Frigida-Essential 1 | NCBI |
FIE | Fertilization-Independent Endosperm | NCBI |
FKF1 | Flavin-Binding/Kelch Repeat | NCBI |
FLC | Flowering Locus C | NCBI |
FLD | Flowering Locus D | NCBI |
FLK | Flowering Locus K | NCBI |
FLM/MAF1/AGL27 | Flowering Locus M | NCBI |
FPA | Flowing Time Control | NCBI |
FRI | Frigida-Like | NCBI |
FRL1 | Frigida-Like 1 | NCBI |
FRL2 | Frigida-Like 2 | NCBI |
FT | Flowering Locus T | NCBI |
FUL/AGL8 | Fruitfull | NCBI |
FVE | Nucleosome/Chromatin Assembly Factor Group C | NCBI |
FY | Flowing Time Control | NCBI |
GAI | Gibberellic Acid Insensitive | NCBI |
GI | Gigantea | NCBI |
Hd1 | Histone Deacetylase 1 | NCBI |
LD | Luminidependens | NCBI |
LFR | Leaf and Flower Related | NCBI |
LFY | Leafy | NCBI |
LHP1 | Like Heterochromatin Protein 1 | NCBI |
LHY | Late Elongated Hypocotyl | NCBI |
LMI1 | Late Meristem Identity 1 | NCBI |
LUG | Leunig | NCBI |
MAF2/AGL31 | MADS Affecting Flowering 2 | NCBI |
MAF3 | MADS Affecting Flowering 3 | NCBI |
MAF4 | MADS Affecting Flowering 4 | NCBI |
MAF5 | MADS Affecting Flowering 5 | NCBI |
MIR172A | MicroRNA 172 A | NCBI |
MIR172B | MicroRNA 172 B | NCBI |
PAF1 | Proteasome Subunit Alpha | NCBI |
PFT1 | Phytochrome and Flowering Time 1 | NCBI |
PHYA | Phytochrome A | NCBI |
PHYB | Phytochrome B | NCBI |
PHYC | Phytochrome C | NCBI |
PHYE | Phytochrome E | NCBI |
PI | Pistillata | NCBI |
PIE1 | Photoperiod-Independent Early Flowering 1 | NCBI |
PIF4 | Phytochrome Interacting Factor 4 | NCBI |
PNF | Pound-Foolish | NCBI |
PNY | Pennywise | NCBI |
RGA | Repressor of GA | NCBI |
SAP18 | SIN3 Associated Polypeptide P18 | NCBI |
SEP3 | Sepallata | NCBI |
SEU | Seuss | NCBI |
SMZ | Schlafmutze | NCBI |
SNZ | Schnarchzapfen | NCBI |
SOC1/AGL20 | Supressor of Overexpression of Constans 1 | NCBI |
SPL3 | Squamosa Promoter-Binding-Like Protein 3 | NCBI |
SPL9 | Squamosa Promoter-Binding-Like Protein 9 | NCBI |
SPY | Spindly | NCBI |
STM | Shoot Meristemless | NCBI |
SVP/AGL22 | Short Vegetative Phase | NCBI |
SYD | Splayed | NCBI |
TEM1 | Tempranillo 1 | NCBI |
TEM2 | Tempranillo 2 | NCBI |
TFL1 | Terminal Flower 1 | NCBI |
TFL2 | Terminal Flower 2 | NCBI |
TOC1 | Timing of CAB Expression | NCBI |
TOE1 | Target of EAT 1 | NCBI |
TOE2 | Target of EAT 2 | NCBI |
TOE3 | Target of EAT 3 | NCBI |
TSF | Twin Sister of FT | NCBI |
UFO | Unusual Floral Organs | NCBI |
VIN3 | Vernalization Insensitive 3 | NCBI |
VIP | Vernalization Independence | NCBI |
VIP3 | Vernalization Independence 3 | NCBI |
VIP4 | Vernalization Independence 4 | NCBI |
VRN1 | Vernalization 1 | NCBI |
VRN2 | Vernalization 2 | NCBI |
ZTL | Zeitlupe | NCBI |