Difference between revisions of "Time of bloom"

From GcatWiki
Jump to: navigation, search
Line 63: Line 63:
 
! <i>Arabidopsis</i> Locus !! Other Names !! AA Sequence !! Pathway !! Potential Ortholog
 
! <i>Arabidopsis</i> Locus !! Other Names !! AA Sequence !! Pathway !! Potential Ortholog
 
|-
 
|-
−
| PEP||||[http://arabidopsis.org/servlets/TairObject?id=127403&type=locus TAIR]||V||
+
| ATCOL4||||[http://arabidopsis.org/servlets/TairObject?id=131285&type=locus TAIR]||L||
 
|-
 
|-
−
| FD||||[http://arabidopsis.org/servlets/TairObject?id=128068&type=locus TAIR]||Am, MI||
+
| ATCOL5||||[http://arabidopsis.org/servlets/TairObject?id=134422&type=locus TAIR]||L||
 
|-
 
|-
−
| FRI||||[http://arabidopsis.org/servlets/TairObject?id=128299&type=locus TAIR]||V||
+
| ATSWC6||||[http://arabidopsis.org/servlets/TairObject?id=500231974&type=locus TAIR]||V||
 
|-
 
|-
−
| VEL1||||[http://arabidopsis.org/servlets/TairObject?id=128580&type=locus TAIR]||Au, V||
+
| CIB1||||[http://arabidopsis.org/servlets/TairObject?id=130033&type=locus TAIR]||L||
 
|-
 
|-
−
| FCA||||[http://arabidopsis.org/servlets/TairObject?id=128853&type=locus TAIR]||Am, Au||[http://www.uniprot.org/uniprot/D2Y3W8 Grape]
+
| CLF||||[http://arabidopsis.org/servlets/TairObject?id=26534&type=locus TAIR]||Au, V||
−
|-
 
−
| SWN||||[http://arabidopsis.org/servlets/TairObject?id=129104&type=locus TAIR]||Au, V||
 
−
|-
 
−
| NFC5*||||[http://arabidopsis.org/servlets/TairObject?id=129407&type=locus TAIR]||Am, Au||
 
−
|-
 
−
| SPA2||||[http://arabidopsis.org/servlets/TairObject?id=129633&type=locus TAIR]||L||
 
−
|-
 
−
| CRY1||||[http://arabidopsis.org/servlets/TairObject?id=129943&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/B6REW9 Grape]
 
−
|-
 
−
| CIB1||||[http://arabidopsis.org/servlets/TairObject?id=130033&type=locus TAIR]||L||
 
 
|-
 
|-
 
| CO||||[http://arabidopsis.org/servlets/TairObject?id=130492&type=locus TAIR]||FPI, L||
 
| CO||||[http://arabidopsis.org/servlets/TairObject?id=130492&type=locus TAIR]||FPI, L||
Line 87: Line 77:
 
| COL1||||[http://arabidopsis.org/servlets/TairObject?id=130495&type=locus TAIR]||FPI, L||
 
| COL1||||[http://arabidopsis.org/servlets/TairObject?id=130495&type=locus TAIR]||FPI, L||
 
|-
 
|-
−
| MAF3||||[http://arabidopsis.org/servlets/TairObject?id=130633&type=locus TAIR]||Am, FPI, V||
+
| COL2||||[http://arabidopsis.org/servlets/TairObject?id=35635&type=locus TAIR]||FPI, L||
 
|-
 
|-
−
| MAF4||||[http://arabidopsis.org/servlets/TairObject?id=130634&type=locus TAIR]||Am, FPI, V||
+
| COL9||||[http://arabidopsis.org/servlets/TairObject?id=38550&type=locus TAIR]||L||
 
|-
 
|-
−
| MAF5||||[http://arabidopsis.org/servlets/TairObject?id=130635&type=locus TAIR]||Am, FPI, V||
+
| COP1||||[http://arabidopsis.org/servlets/TairObject?id=34462&type=locus TAIR]||L||
 
|-
 
|-
−
| ATCOL4||||[http://arabidopsis.org/servlets/TairObject?id=131285&type=locus TAIR]||L||
+
| CRY1||||[http://arabidopsis.org/servlets/TairObject?id=129943&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/B6REW9 Grape]
 
|-
 
|-
−
| TFL1||||[http://arabidopsis.org/servlets/TairObject?id=131459&type=locus TAIR]||Am, FPI||[http://www.uniprot.org/uniprot/Q84MI7 Grape], [http://www.uniprot.org/uniprot/G5CJU3 Strawberry]
+
| CRY2||||[http://arabidopsis.org/servlets/TairObject?id=28374&type=locus TAIR]||L||
 
|-
 
|-
−
| PRR7||||[http://arabidopsis.org/servlets/TairObject?id=131538&type=locus TAIR]||L||
+
| EFS||||[http://arabidopsis.org/servlets/TairObject?id=136429&type=locus TAIR]||V||
 
|-
 
|-
−
| MSI1||||[http://arabidopsis.org/servlets/TairObject?id=132921&type=locus TAIR]||Au, V||
+
| ELF3||||[http://arabidopsis.org/servlets/TairObject?id=32082&type=locus TAIR]||L||
 
|-
 
|-
−
| TOC1||||[http://arabidopsis.org/servlets/TairObject?id=133196&type=locus TAIR]||L||
+
| ELF4||||[http://arabidopsis.org/servlets/TairObject?id=34766&type=locus TAIR]||L||
 
|-
 
|-
−
| PHYC||||[http://arabidopsis.org/servlets/TairObject?id=133466&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/B9U4G4 Grape]
+
| ELF4-L3||||[http://arabidopsis.org/servlets/TairObject?id=500231553&type=locus TAIR]||L||
 
|-
 
|-
−
| PAF1||||[http://arabidopsis.org/servlets/TairObject?id=133505&type=locus TAIR]||V||
+
| FCA||||[http://arabidopsis.org/servlets/TairObject?id=128853&type=locus TAIR]||Am, Au||[http://www.uniprot.org/uniprot/D2Y3W8 Grape]
 
|-
 
|-
−
| ATCOL5||||[http://arabidopsis.org/servlets/TairObject?id=134422&type=locus TAIR]||L||
+
| FD||||[http://arabidopsis.org/servlets/TairObject?id=128068&type=locus TAIR]||Am, MI||
 
|-
 
|-
−
| ZTL||||[http://arabidopsis.org/servlets/TairObject?id=134481&type=locus TAIR]||L||
+
| FES1||||[http://arabidopsis.org/servlets/TairObject?id=500230872&type=locus TAIR]||V||
 
|-
 
|-
−
| VIN3||||[http://arabidopsis.org/servlets/TairObject?id=134483&type=locus TAIR]||Au, V||
+
| FIE1||||[http://arabidopsis.org/servlets/TairObject?id=38691&type=locus TAIR]||Au, V||
 
|-
 
|-
−
| HUA2||||[http://arabidopsis.org/servlets/TairObject?id=135220&type=locus TAIR]||V||
+
| FKF1||||[http://arabidopsis.org/servlets/TairObject?id=137051&type=locus TAIR]||L||
 
|-
 
|-
 
| FLC||||[http://arabidopsis.org/servlets/TairObject?id=136002&type=locus TAIR]||Am, FPI, V||[http://www.uniprot.org/uniprot/D1MDP4 Grape]
 
| FLC||||[http://arabidopsis.org/servlets/TairObject?id=136002&type=locus TAIR]||Am, FPI, V||[http://www.uniprot.org/uniprot/D1MDP4 Grape]
 
|-
 
|-
−
| FY||||[http://arabidopsis.org/servlets/TairObject?id=136108&type=locus TAIR]||Au||
+
| FLD||||[http://arabidopsis.org/servlets/TairObject?id=35869&type=locus TAIR]||Am, Au||
 +
|-
 +
| FLK||||[http://arabidopsis.org/servlets/TairObject?id=37455&type=locus TAIR]||Au||
 
|-
 
|-
−
| EFS||||[http://arabidopsis.org/servlets/TairObject?id=136429&type=locus TAIR]||V||
+
| FPA||||[http://arabidopsis.org/servlets/TairObject?id=34279&type=locus TAIR]||Au||
 
|-
 
|-
−
| MEA*||||[http://arabidopsis.org/servlets/TairObject?id=136450&type=locus TAIR]||Au, V||
+
| FRI||||[http://arabidopsis.org/servlets/TairObject?id=128299&type=locus TAIR]||V||
 
|-
 
|-
−
| GI||||[http://arabidopsis.org/servlets/TairObject?id=136959&type=locus TAIR]||L||
+
| FRL1||||[http://arabidopsis.org/servlets/TairObject?id=27665&type=locus TAIR]||V||
 
|-
 
|-
−
| FKF1||||[http://arabidopsis.org/servlets/TairObject?id=137051&type=locus TAIR]||L||
+
| FRL2||||[http://arabidopsis.org/servlets/TairObject?id=226970&type=locus TAIR]||V||
 
|-
 
|-
−
| LHY||||[http://arabidopsis.org/servlets/TairObject?id=137165&type=locus TAIR]||L||
+
| FT||||[http://arabidopsis.org/servlets/TairObject?id=30541&type=locus TAIR]||Am, FPI||[http://www.uniprot.org/uniprot/D1MDP3 Grape], [http://www.uniprot.org/uniprot/E5BBS7 Strawberry]
 
|-
 
|-
−
| RAV1||||[http://arabidopsis.org/servlets/TairObject?id=137721&type=locus TAIR]||L||
+
| FVE||||[http://arabidopsis.org/servlets/TairObject?id=33019&type=locus TAIR]||Am, Au||
 
|-
 
|-
−
| FRL2||||[http://arabidopsis.org/servlets/TairObject?id=226970&type=locus TAIR]||V||
+
| FY||||[http://arabidopsis.org/servlets/TairObject?id=136108&type=locus TAIR]||Au||
 
|-
 
|-
−
| VRN2||||[http://arabidopsis.org/servlets/TairObject?id=228106&type=locus TAIR]||Au, V||
+
| GI||||[http://arabidopsis.org/servlets/TairObject?id=136959&type=locus TAIR]||L||
 
|-
 
|-
−
| CLF||||[http://arabidopsis.org/servlets/TairObject?id=26534&type=locus TAIR]||Au, V||
+
| HUA2||||[http://arabidopsis.org/servlets/TairObject?id=135220&type=locus TAIR]||V||
 
|-
 
|-
−
| PHYB||||[http://arabidopsis.org/servlets/TairObject?id=26548&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/B9U4G3 Grape]
+
| LD||||[http://arabidopsis.org/servlets/TairObject?id=26564&type=locus TAIR]||Au||
 
|-
 
|-
−
| TSF||||[http://arabidopsis.org/servlets/TairObject?id=26553&type=locus TAIR]||Am, FPI||
+
| LDL1*||||[http://arabidopsis.org/servlets/TairObject?id=29274&type=locus TAIR]||Am, Au||
 
|-
 
|-
−
| LD||||[http://arabidopsis.org/servlets/TairObject?id=26564&type=locus TAIR]||Au||
+
| LDL2*||||[http://arabidopsis.org/servlets/TairObject?id=38624&type=locus TAIR]||Am, Au||
 
|-
 
|-
−
| PHYD||||[http://arabidopsis.org/servlets/TairObject?id=26567&type=locus TAIR]||L||
+
| LHY||||[http://arabidopsis.org/servlets/TairObject?id=137165&type=locus TAIR]||L||
 
|-
 
|-
−
| PHYE||||[http://arabidopsis.org/servlets/TairObject?id=26568&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/B9U4G5 Grape]
+
| LKP2||||[http://arabidopsis.org/servlets/TairObject?id=500231567&type=locus TAIR]||L||
 
|-
 
|-
−
| PHYA||||[http://arabidopsis.org/servlets/TairObject?id=27545&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/A5B9C2 Grape]
+
| LUX||||[http://arabidopsis.org/servlets/TairObject?id=35747&type=locus TAIR]||L||
 
|-
 
|-
−
| TEM2||||[http://arabidopsis.org/servlets/TairObject?id=27570&type=locus TAIR]||L||
+
| MAF1||||[http://arabidopsis.org/servlets/TairObject?id=29106&type=locus TAIR]||Am, FPI, V||
 
|-
 
|-
−
| FRL1||||[http://arabidopsis.org/servlets/TairObject?id=27665&type=locus TAIR]||V||
+
| MAF3||||[http://arabidopsis.org/servlets/TairObject?id=130633&type=locus TAIR]||Am, FPI, V||
 
|-
 
|-
−
| SUF4||||[http://arabidopsis.org/servlets/TairObject?id=28096&type=locus TAIR]||V||
+
| MAF4||||[http://arabidopsis.org/servlets/TairObject?id=130634&type=locus TAIR]||Am, FPI, V||
 
|-
 
|-
−
| CRY2||||[http://arabidopsis.org/servlets/TairObject?id=28374&type=locus TAIR]||L||
+
| MAF5||||[http://arabidopsis.org/servlets/TairObject?id=130635&type=locus TAIR]||Am, FPI, V||
 
|-
 
|-
−
| MAF1||||[http://arabidopsis.org/servlets/TairObject?id=29106&type=locus TAIR]||Am, FPI, V||
+
| MEA*||||[http://arabidopsis.org/servlets/TairObject?id=136450&type=locus TAIR]||Au, V||
 
|-
 
|-
−
| LDL1*||||[http://arabidopsis.org/servlets/TairObject?id=29274&type=locus TAIR]||Am, Au||
+
| MSI1||||[http://arabidopsis.org/servlets/TairObject?id=132921&type=locus TAIR]||Au, V||
 
|-
 
|-
−
| TEM1||||[http://arabidopsis.org/servlets/TairObject?id=30061&type=locus TAIR]||L||
+
| NFC5*||||[http://arabidopsis.org/servlets/TairObject?id=129407&type=locus TAIR]||Am, Au||
 
|-
 
|-
−
| FT||||[http://arabidopsis.org/servlets/TairObject?id=30541&type=locus TAIR]||Am, FPI||[http://www.uniprot.org/uniprot/D1MDP3 Grape], [http://www.uniprot.org/uniprot/E5BBS7 Strawberry]
+
| PAF1||||[http://arabidopsis.org/servlets/TairObject?id=133505&type=locus TAIR]||V||
 
|-
 
|-
 
| PAF2||||[http://arabidopsis.org/servlets/TairObject?id=30983&type=locus TAIR]||V||
 
| PAF2||||[http://arabidopsis.org/servlets/TairObject?id=30983&type=locus TAIR]||V||
 
|-
 
|-
−
| SPA4||||[http://arabidopsis.org/servlets/TairObject?id=31031&type=locus TAIR]||L||
+
| PEP||||[http://arabidopsis.org/servlets/TairObject?id=127403&type=locus TAIR]||V||
 +
|-
 +
| PHYA||||[http://arabidopsis.org/servlets/TairObject?id=27545&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/A5B9C2 Grape]
 +
|-
 +
| PHYB||||[http://arabidopsis.org/servlets/TairObject?id=26548&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/B9U4G3 Grape]
 
|-
 
|-
−
| SPA1||||[http://arabidopsis.org/servlets/TairObject?id=31336&type=locus TAIR]||L||
+
| PHYC||||[http://arabidopsis.org/servlets/TairObject?id=133466&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/B9U4G4 Grape]
 
|-
 
|-
−
| SVP||||[http://arabidopsis.org/servlets/TairObject?id=31694&type=locus TAIR]||Am, V||[http://www.uniprot.org/uniprot/H9CTT8 Grape]
+
| PHYD||||[http://arabidopsis.org/servlets/TairObject?id=26567&type=locus TAIR]||L||
 
|-
 
|-
−
| RFI2||||[http://arabidopsis.org/servlets/TairObject?id=32070&type=locus TAIR]||L||
+
| PHYE||||[http://arabidopsis.org/servlets/TairObject?id=26568&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/B9U4G5 Grape]
 
|-
 
|-
−
| ELF3||||[http://arabidopsis.org/servlets/TairObject?id=32082&type=locus TAIR]||L||
+
| PIE1||||[http://arabidopsis.org/servlets/TairObject?id=37964&type=locus TAIR]||V||
 
|-
 
|-
−
| VEL2||||[http://arabidopsis.org/servlets/TairObject?id=32230&type=locus TAIR]||Au||
+
| PRR7||||[http://arabidopsis.org/servlets/TairObject?id=131538&type=locus TAIR]||L||
 
|-
 
|-
−
| VEL3||||[http://arabidopsis.org/servlets/TairObject?id=32249&type=locus TAIR]||Au||
+
| RAV1||||[http://arabidopsis.org/servlets/TairObject?id=137721&type=locus TAIR]||L||
 
|-
 
|-
−
| FVE||||[http://arabidopsis.org/servlets/TairObject?id=33019&type=locus TAIR]||Am, Au||
+
| RFI2||||[http://arabidopsis.org/servlets/TairObject?id=32070&type=locus TAIR]||L||
 
|-
 
|-
−
| FPA||||[http://arabidopsis.org/servlets/TairObject?id=34279&type=locus TAIR]||Au||
+
| SPA1||||[http://arabidopsis.org/servlets/TairObject?id=31336&type=locus TAIR]||L||
 
|-
 
|-
−
| COP1||||[http://arabidopsis.org/servlets/TairObject?id=34462&type=locus TAIR]||L||
+
| SPA2||||[http://arabidopsis.org/servlets/TairObject?id=129633&type=locus TAIR]||L||
 
|-
 
|-
−
| ELF4||||[http://arabidopsis.org/servlets/TairObject?id=34766&type=locus TAIR]||L||
+
| SPA3||||[http://arabidopsis.org/servlets/TairObject?id=500230681&type=locus TAIR]||L||
 
|-
 
|-
−
| COL2||||[http://arabidopsis.org/servlets/TairObject?id=35635&type=locus TAIR]||FPI, L||
+
| SPA4||||[http://arabidopsis.org/servlets/TairObject?id=31031&type=locus TAIR]||L||
 
|-
 
|-
−
| LUX||||[http://arabidopsis.org/servlets/TairObject?id=35747&type=locus TAIR]||L||
+
| SUF4||||[http://arabidopsis.org/servlets/TairObject?id=28096&type=locus TAIR]||V||
 
|-
 
|-
−
| FLD||||[http://arabidopsis.org/servlets/TairObject?id=35869&type=locus TAIR]||Am, Au||
+
| SVP||||[http://arabidopsis.org/servlets/TairObject?id=31694&type=locus TAIR]||Am, V||[http://www.uniprot.org/uniprot/H9CTT8 Grape]
 
|-
 
|-
−
| FLK||||[http://arabidopsis.org/servlets/TairObject?id=37455&type=locus TAIR]||Au||
+
| SWN||||[http://arabidopsis.org/servlets/TairObject?id=129104&type=locus TAIR]||Au, V||
 
|-
 
|-
−
| VRN1||||[http://arabidopsis.org/servlets/TairObject?id=37620&type=locus TAIR]||V||
+
| TEM1||||[http://arabidopsis.org/servlets/TairObject?id=30061&type=locus TAIR]||L||
 
|-
 
|-
−
| PIE1||||[http://arabidopsis.org/servlets/TairObject?id=37964&type=locus TAIR]||V||
+
| TEM2||||[http://arabidopsis.org/servlets/TairObject?id=27570&type=locus TAIR]||L||
 
|-
 
|-
−
| COL9||||[http://arabidopsis.org/servlets/TairObject?id=38550&type=locus TAIR]||L||
+
| TFL1||||[http://arabidopsis.org/servlets/TairObject?id=131459&type=locus TAIR]||Am, FPI||[http://www.uniprot.org/uniprot/Q84MI7 Grape], [http://www.uniprot.org/uniprot/G5CJU3 Strawberry]
 
|-
 
|-
−
| LDL2*||||[http://arabidopsis.org/servlets/TairObject?id=38624&type=locus TAIR]||Am, Au||
+
| TOC1||||[http://arabidopsis.org/servlets/TairObject?id=133196&type=locus TAIR]||L||
 
|-
 
|-
−
| FIE1||||[http://arabidopsis.org/servlets/TairObject?id=38691&type=locus TAIR]||Au, V||
+
| TSF||||[http://arabidopsis.org/servlets/TairObject?id=26553&type=locus TAIR]||Am, FPI||
 
|-
 
|-
 
| UVR3*||||[http://arabidopsis.org/servlets/TairObject?id=38932&type=locus TAIR]||L||
 
| UVR3*||||[http://arabidopsis.org/servlets/TairObject?id=38932&type=locus TAIR]||L||
 
|-
 
|-
−
| VRN5||||[http://arabidopsis.org/servlets/TairObject?id=39196&type=locus TAIR]||Au, V||
+
| VEL1||||[http://arabidopsis.org/servlets/TairObject?id=128580&type=locus TAIR]||Au, V||
 
|-
 
|-
−
| SPA3||||[http://arabidopsis.org/servlets/TairObject?id=500230681&type=locus TAIR]||L||
+
| VEL2||||[http://arabidopsis.org/servlets/TairObject?id=32230&type=locus TAIR]||Au||
 
|-
 
|-
−
| FES1||||[http://arabidopsis.org/servlets/TairObject?id=500230872&type=locus TAIR]||V||
+
| VEL3||||[http://arabidopsis.org/servlets/TairObject?id=32249&type=locus TAIR]||Au||
 
|-
 
|-
−
| ELF4-L3||||[http://arabidopsis.org/servlets/TairObject?id=500231553&type=locus TAIR]||L||
+
| VIN3||||[http://arabidopsis.org/servlets/TairObject?id=134483&type=locus TAIR]||Au, V||
 
|-
 
|-
−
| LKP2||||[http://arabidopsis.org/servlets/TairObject?id=500231567&type=locus TAIR]||L||
+
| VRN1||||[http://arabidopsis.org/servlets/TairObject?id=37620&type=locus TAIR]||V||
 
|-
 
|-
−
| ATSWC6||||[http://arabidopsis.org/servlets/TairObject?id=500231974&type=locus TAIR]||V||
+
| VRN2||||[http://arabidopsis.org/servlets/TairObject?id=228106&type=locus TAIR]||Au, V||
 
|-
 
|-
−
| ATBZIP27||||[http://arabidopsis.org/servlets/TairObject?id=227228&type=locus UniProtKB]||Am, MI||
+
| VRN5||||[http://arabidopsis.org/servlets/TairObject?id=39196&type=locus TAIR]||Au, V||
 
|-
 
|-
−
| MSI2*||||[http://arabidopsis.org/servlets/TairObject?id=34537&type=locus UniProtKB]||Au, V||
+
| ZTL||||[http://arabidopsis.org/servlets/TairObject?id=134481&type=locus TAIR]||L||
 
|-
 
|-
−
| MSI3*||||[http://arabidopsis.org/servlets/TairObject?id=129003&type=locus UniProtKB]||Au, V||
+
| AGL14||||[http://arabidopsis.org/servlets/TairObject?id=129748&type=locus UniProtKB]||V||
−
|-
 
−
| AT2G34140||||[http://arabidopsis.org/servlets/TairObject?id=33865&type=locus UniProtKB]||L||
 
 
|-
 
|-
 
| AGL19||||[http://arabidopsis.org/servlets/TairObject?id=128336&type=locus UniProtKB]||V||
 
| AGL19||||[http://arabidopsis.org/servlets/TairObject?id=128336&type=locus UniProtKB]||V||
Line 233: Line 227:
 
| AGL24||||[http://arabidopsis.org/servlets/TairObject?id=127586&type=locus UniProtKB]||V||
 
| AGL24||||[http://arabidopsis.org/servlets/TairObject?id=127586&type=locus UniProtKB]||V||
 
|-
 
|-
−
| AT1G29160||||[http://arabidopsis.org/servlets/TairObject?id=29883&type=locus UniProtKB]||L||
+
| AGL31||||[http://arabidopsis.org/servlets/TairObject?id=135154&type=locus UniProtKB]||Am, FPI, V||
 +
|-
 +
| APRR3||||[http://arabidopsis.org/servlets/TairObject?id=133317&type=locus UniProtKB]||L||
 
|-
 
|-
−
| CCA1||||[http://arabidopsis.org/servlets/TairObject?id=32221&type=locus UniProtKB]||L||
+
| APRR5||||[http://arabidopsis.org/servlets/TairObject?id=135985&type=locus UniProtKB]||L||
 
|-
 
|-
−
| AGL14||||[http://arabidopsis.org/servlets/TairObject?id=129748&type=locus UniProtKB]||V||
+
| APRR9||||[http://arabidopsis.org/servlets/TairObject?id=32227&type=locus UniProtKB]||L||
 
|-
 
|-
−
| CDF2||||[http://arabidopsis.org/servlets/TairObject?id=133414&type=locus UniProtKB]||L||
+
| AT1G26790||||[http://arabidopsis.org/servlets/TairObject?id=137136&type=locus UniProtKB]||L||
 
|-
 
|-
−
| CDF1||||[http://arabidopsis.org/servlets/TairObject?id=131911&type=locus UniProtKB]||L||
+
| AT1G29160||||[http://arabidopsis.org/servlets/TairObject?id=29883&type=locus UniProtKB]||L||
 
|-
 
|-
−
| AT3G21320||||[http://arabidopsis.org/servlets/TairObject?id=39170&type=locus UniProtKB]||L||
+
| AT2G34140||||[http://arabidopsis.org/servlets/TairObject?id=33865&type=locus UniProtKB]||L||
 
|-
 
|-
 
| AT2G46670*||||[http://arabidopsis.org/servlets/TairObject?id=35019&type=locus UniProtKB]||L||
 
| AT2G46670*||||[http://arabidopsis.org/servlets/TairObject?id=35019&type=locus UniProtKB]||L||
 
|-
 
|-
−
| APRR5||||[http://arabidopsis.org/servlets/TairObject?id=135985&type=locus UniProtKB]||L||
+
| AT3G21320||||[http://arabidopsis.org/servlets/TairObject?id=39170&type=locus UniProtKB]||L||
 
|-
 
|-
−
| APRR9||||[http://arabidopsis.org/servlets/TairObject?id=32227&type=locus UniProtKB]||L||
+
| AT3G25730||||[http://arabidopsis.org/servlets/TairObject?id=37641&type=locus UniProtKB]||L||
 
|-
 
|-
−
| ATARP6||||[http://arabidopsis.org/servlets/TairObject?id=40458&type=locus UniProtKB]||Am, V||
+
| AT5G08230*||||[http://arabidopsis.org/servlets/TairObject?id=135669&type=locus UniProtKB]||V||
 
|-
 
|-
 
| AT5G23280*||||[http://arabidopsis.org/servlets/TairObject?id=133661&type=locus UniProtKB]||L||
 
| AT5G23280*||||[http://arabidopsis.org/servlets/TairObject?id=133661&type=locus UniProtKB]||L||
 
|-
 
|-
−
| AGL31||||[http://arabidopsis.org/servlets/TairObject?id=135154&type=locus UniProtKB]||Am, FPI, V||
+
| AT5G48250*||||[http://arabidopsis.org/servlets/TairObject?id=133393&type=locus UniProtKB]||L||
 +
|-
 +
| AT5G59570*||||[http://arabidopsis.org/servlets/TairObject?id=131156&type=locus UniProtKB]||L||
 +
|-
 +
| ATARP6||||[http://arabidopsis.org/servlets/TairObject?id=40458&type=locus UniProtKB]||Am, V||
 
|-
 
|-
−
| CHE||||[http://www.uniprot.org/uniprot/Q9FTA2 UniProtKB]||L||
+
| ATBZIP27||||[http://arabidopsis.org/servlets/TairObject?id=227228&type=locus UniProtKB]||Am, MI||
 
|-
 
|-
−
| AT5G08230*||||[http://arabidopsis.org/servlets/TairObject?id=135669&type=locus UniProtKB]||V||
+
| CCA1||||[http://arabidopsis.org/servlets/TairObject?id=32221&type=locus UniProtKB]||L||
 
|-
 
|-
−
| AT1G26790||||[http://arabidopsis.org/servlets/TairObject?id=137136&type=locus UniProtKB]||L||
+
| CDF1||||[http://arabidopsis.org/servlets/TairObject?id=131911&type=locus UniProtKB]||L||
 
|-
 
|-
−
| AT3G25730||||[http://arabidopsis.org/servlets/TairObject?id=37641&type=locus UniProtKB]||L||
+
| CDF2||||[http://arabidopsis.org/servlets/TairObject?id=133414&type=locus UniProtKB]||L||
 
|-
 
|-
−
| AT5G59570*||||[http://arabidopsis.org/servlets/TairObject?id=131156&type=locus UniProtKB]||L||
+
| CDF3||||[http://arabidopsis.org/servlets/TairObject?id=36439&type=locus UniProtKB]||L||
 
|-
 
|-
−
| AT5G48250*||||[http://arabidopsis.org/servlets/TairObject?id=133393&type=locus UniProtKB]||L||
+
| CHE||||[http://www.uniprot.org/uniprot/Q9FTA2 UniProtKB]||L||
 
|-
 
|-
−
| APRR3||||[http://arabidopsis.org/servlets/TairObject?id=133317&type=locus UniProtKB]||L||
+
| MSI2*||||[http://arabidopsis.org/servlets/TairObject?id=34537&type=locus UniProtKB]||Au, V||
 
|-
 
|-
−
| CDF3||||[http://arabidopsis.org/servlets/TairObject?id=36439&type=locus UniProtKB]||L||
+
| MSI3*||||[http://arabidopsis.org/servlets/TairObject?id=129003&type=locus UniProtKB]||Au, V||
 
|}
 
|}

Revision as of 21:13, 5 March 2013

By Austin Mudd - Spring 2013


To Do

  • Write introduction and procedure sections
  • Aggregate all sequences into a single document in proper FASTA format


Introduction

The factors affecting time of flowering from the Max Planck Institute for Plant Breeding Research


Procedure

  • Overall procedure for finding the genes, running with GenSAS, determining SSRs, etc


Gallery of Arabidopsis Flowering Pathways


105 Flowering Genes

The below table lists all of the genes involved in the ambient temperature, autonomous, light signaling, and vernalization pathways.

Note: All Arabidopsis genes are compiled from Jung et al., 2012. All potential orthologs are found via UniProt Grape or UniProt Strawberry nomenclature search. Formatting is the same as Jung et al., 2012 where a * indicates 1 of "24 Arabidopsis genes, which had not been previously investigated for their roles in flowering, [that] belong to [paralog groups] with known Arabidopsis flowering genes." Moreover, for pathways, "Am: Ambient temperature pathway, Au: Autonomous pathway, FPI: Flowering Pathway [Integrators], L: Light signaling pathway, MI: Meristem Identity, V: Vernalization pathway."

Arabidopsis Locus Other Names AA Sequence Pathway Potential Ortholog
ATCOL4 TAIR L
ATCOL5 TAIR L
ATSWC6 TAIR V
CIB1 TAIR L
CLF TAIR Au, V
CO TAIR FPI, L
COL1 TAIR FPI, L
COL2 TAIR FPI, L
COL9 TAIR L
COP1 TAIR L
CRY1 TAIR L Grape
CRY2 TAIR L
EFS TAIR V
ELF3 TAIR L
ELF4 TAIR L
ELF4-L3 TAIR L
FCA TAIR Am, Au Grape
FD TAIR Am, MI
FES1 TAIR V
FIE1 TAIR Au, V
FKF1 TAIR L
FLC TAIR Am, FPI, V Grape
FLD TAIR Am, Au
FLK TAIR Au
FPA TAIR Au
FRI TAIR V
FRL1 TAIR V
FRL2 TAIR V
FT TAIR Am, FPI Grape, Strawberry
FVE TAIR Am, Au
FY TAIR Au
GI TAIR L
HUA2 TAIR V
LD TAIR Au
LDL1* TAIR Am, Au
LDL2* TAIR Am, Au
LHY TAIR L
LKP2 TAIR L
LUX TAIR L
MAF1 TAIR Am, FPI, V
MAF3 TAIR Am, FPI, V
MAF4 TAIR Am, FPI, V
MAF5 TAIR Am, FPI, V
MEA* TAIR Au, V
MSI1 TAIR Au, V
NFC5* TAIR Am, Au
PAF1 TAIR V
PAF2 TAIR V
PEP TAIR V
PHYA TAIR L Grape
PHYB TAIR L Grape
PHYC TAIR L Grape
PHYD TAIR L
PHYE TAIR L Grape
PIE1 TAIR V
PRR7 TAIR L
RAV1 TAIR L
RFI2 TAIR L
SPA1 TAIR L
SPA2 TAIR L
SPA3 TAIR L
SPA4 TAIR L
SUF4 TAIR V
SVP TAIR Am, V Grape
SWN TAIR Au, V
TEM1 TAIR L
TEM2 TAIR L
TFL1 TAIR Am, FPI Grape, Strawberry
TOC1 TAIR L
TSF TAIR Am, FPI
UVR3* TAIR L
VEL1 TAIR Au, V
VEL2 TAIR Au
VEL3 TAIR Au
VIN3 TAIR Au, V
VRN1 TAIR V
VRN2 TAIR Au, V
VRN5 TAIR Au, V
ZTL TAIR L
AGL14 UniProtKB V
AGL19 UniProtKB V
AGL24 UniProtKB V
AGL31 UniProtKB Am, FPI, V
APRR3 UniProtKB L
APRR5 UniProtKB L
APRR9 UniProtKB L
AT1G26790 UniProtKB L
AT1G29160 UniProtKB L
AT2G34140 UniProtKB L
AT2G46670* UniProtKB L
AT3G21320 UniProtKB L
AT3G25730 UniProtKB L
AT5G08230* UniProtKB V
AT5G23280* UniProtKB L
AT5G48250* UniProtKB L
AT5G59570* UniProtKB L
ATARP6 UniProtKB Am, V
ATBZIP27 UniProtKB Am, MI
CCA1 UniProtKB L
CDF1 UniProtKB L
CDF2 UniProtKB L
CDF3 UniProtKB L
CHE UniProtKB L
MSI2* UniProtKB Au, V
MSI3* UniProtKB Au, V
Retrieved from "http://gcat.davidson.edu/GcatWiki/index.php?title=Time_of_bloom&oldid=16095"