Difference between revisions of "Time of bloom"

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! <i>Arabidopsis</i> Locus !! Other Names !! AA Sequence !! Pathway !! Potential Ortholog
 
! <i>Arabidopsis</i> Locus !! Other Names !! AA Sequence !! Pathway !! Potential Ortholog
 
|-
 
|-
−
| AT1G01060||LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1||[http://arabidopsis.org/servlets/TairObject?id=137165&type=locus TAIR]||Light signaling pathway||
+
| AT1G01060||LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1||[http://arabidopsis.org/servlets/TairObject?id=137165&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT1G02580||EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEA, MEDEA, SDG5, SET DOMAIN-CONTAINING PROTEIN 5||[http://arabidopsis.org/servlets/TairObject?id=136450&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
+
| AT1G02580||EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEA, MEDEA, SDG5, SET DOMAIN-CONTAINING PROTEIN 5||[http://arabidopsis.org/servlets/TairObject?id=136450&type=locus TAIR]||Autonomous, Vernalization||
 
|-
 
|-
−
| AT1G04400||AT-PHH1, ATCRY2, CRY2, CRYPTOCHROME 2, FHA, PHH1||[http://arabidopsis.org/servlets/TairObject?id=28374&type=locus TAIR]||Light signaling pathway||
+
| AT1G04400||AT-PHH1, ATCRY2, CRY2, CRYPTOCHROME 2, FHA, PHH1||[http://arabidopsis.org/servlets/TairObject?id=28374&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT1G09570||ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A||[http://arabidopsis.org/servlets/TairObject?id=27545&type=locus TAIR]||Light signaling pathway||[http://www.uniprot.org/uniprot/A5B9C2 Grape]
+
| AT1G09570||ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A||[http://arabidopsis.org/servlets/TairObject?id=27545&type=locus TAIR]||Light signaling||[http://www.uniprot.org/uniprot/A5B9C2 Grape]
 
|-
 
|-
−
| AT1G13260||EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, RELATED TO ABI3/VP1 1||[http://arabidopsis.org/servlets/TairObject?id=137721&type=locus TAIR]||Light signaling pathway||
+
| AT1G13260||EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, RELATED TO ABI3/VP1 1||[http://arabidopsis.org/servlets/TairObject?id=137721&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT1G20330||COTYLEDON VASCULAR PATTERN 1, CVP1, FRILL1, FRL1, SMT2, STEROL METHYLTRANSFERASE 2||[http://arabidopsis.org/servlets/TairObject?id=27665&type=locus TAIR]||Vernalization pathway||
+
| AT1G20330||COTYLEDON VASCULAR PATTERN 1, CVP1, FRILL1, FRL1, SMT2, STEROL METHYLTRANSFERASE 2||[http://arabidopsis.org/servlets/TairObject?id=27665&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT1G22770||FB, GI, GIGANTEA||[http://arabidopsis.org/servlets/TairObject?id=136959&type=locus TAIR]||Light signaling pathway||
+
| AT1G22770||FB, GI, GIGANTEA||[http://arabidopsis.org/servlets/TairObject?id=136959&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT1G25560||EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1||[http://arabidopsis.org/servlets/TairObject?id=30061&type=locus TAIR]||Light signaling pathway||
+
| AT1G25560||EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1||[http://arabidopsis.org/servlets/TairObject?id=30061&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT1G26790||||[http://arabidopsis.org/servlets/TairObject?id=137136&type=locus TAIR]||Light signaling pathway||
+
| AT1G26790||||[http://arabidopsis.org/servlets/TairObject?id=137136&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT1G29160||||[http://arabidopsis.org/servlets/TairObject?id=29883&type=locus TAIR]||Light signaling pathway||
+
| AT1G29160||||[http://arabidopsis.org/servlets/TairObject?id=29883&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT1G30970||SUF4, SUPPRESSOR OF FRIGIDA4||[http://arabidopsis.org/servlets/TairObject?id=28096&type=locus TAIR]||Vernalization pathway||
+
| AT1G30970||SUF4, SUPPRESSOR OF FRIGIDA4||[http://arabidopsis.org/servlets/TairObject?id=28096&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT1G31814||FRIGIDA LIKE 2, FRL2||[http://arabidopsis.org/servlets/TairObject?id=226970&type=locus TAIR]||Vernalization pathway||
+
| AT1G31814||FRIGIDA LIKE 2, FRL2||[http://arabidopsis.org/servlets/TairObject?id=226970&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT1G47250||20S PROTEASOME ALPHA SUBUNIT F2, PAF2||[http://arabidopsis.org/servlets/TairObject?id=30983&type=locus TAIR]||Vernalization pathway||
+
| AT1G47250||20S PROTEASOME ALPHA SUBUNIT F2, PAF2||[http://arabidopsis.org/servlets/TairObject?id=30983&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT1G53090||SPA1-RELATED 4, SPA4||[http://arabidopsis.org/servlets/TairObject?id=31031&type=locus TAIR]||Light signaling pathway||
+
| AT1G53090||SPA1-RELATED 4, SPA4||[http://arabidopsis.org/servlets/TairObject?id=31031&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT1G62830||ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATLSD1, ATSWP1, LDL1, LSD1, LSD1-LIKE 1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1||[http://arabidopsis.org/servlets/TairObject?id=29274&type=locus TAIR]||Ambient temperature pathway, Autonomous pathway||
+
| AT1G62830||ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATLSD1, ATSWP1, LDL1, LSD1, LSD1-LIKE 1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1||[http://arabidopsis.org/servlets/TairObject?id=29274&type=locus TAIR]||Ambient temperature, Autonomous||
 
|-
 
|-
−
| AT1G65480||FLOWERING LOCUS T, FT||[http://arabidopsis.org/servlets/TairObject?id=30541&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator||[http://www.uniprot.org/uniprot/D1MDP3 Grape], [http://www.uniprot.org/uniprot/E5BBS7 Strawberry]
+
| AT1G65480||FLOWERING LOCUS T, FT||[http://arabidopsis.org/servlets/TairObject?id=30541&type=locus TAIR]||Ambient temperature, Flowering integrator||[http://www.uniprot.org/uniprot/D1MDP3 Grape], [http://www.uniprot.org/uniprot/E5BBS7 Strawberry]
 
|-
 
|-
−
| AT1G68050||"FLAVIN-BINDING, KELCH REPEAT, F BOX 1", ADO3, FKF1||[http://arabidopsis.org/servlets/TairObject?id=137051&type=locus TAIR]||Light signaling pathway||
+
| AT1G68050||"FLAVIN-BINDING, KELCH REPEAT, F BOX 1", ADO3, FKF1||[http://arabidopsis.org/servlets/TairObject?id=137051&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT1G68840||ATRAV2, EDF2, ETHYLENE RESPONSE DNA BINDING FACTOR 2, RAP2.8, RAV2, RELATED TO ABI3/VP1 2, RELATED TO AP2 8, TEM2, TEMPRANILLO 2||[http://arabidopsis.org/servlets/TairObject?id=27570&type=locus TAIR]||Light signaling pathway||
+
| AT1G68840||ATRAV2, EDF2, ETHYLENE RESPONSE DNA BINDING FACTOR 2, RAP2.8, RAV2, RELATED TO ABI3/VP1 2, RELATED TO AP2 8, TEM2, TEMPRANILLO 2||[http://arabidopsis.org/servlets/TairObject?id=27570&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT1G77080||AGAMOUS-LIKE 27, AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1||[http://arabidopsis.org/servlets/TairObject?id=29106&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway||
+
| AT1G77080||AGAMOUS-LIKE 27, AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1||[http://arabidopsis.org/servlets/TairObject?id=29106&type=locus TAIR]||Ambient temperature, Flowering integrator, Vernalization||
 
|-
 
|-
−
| AT1G77300||ASH1 HOMOLOG 2, ASHH2, CAROTENOID CHLOROPLAST REGULATORY1, CCR1, EARLY FLOWERING IN SHORT DAYS, EFS, LAZ2, LAZARUS 2, SDG8, SET DOMAIN GROUP 8||[http://arabidopsis.org/servlets/TairObject?id=136429&type=locus TAIR]||Vernalization pathway||
+
| AT1G77300||ASH1 HOMOLOG 2, ASHH2, CAROTENOID CHLOROPLAST REGULATORY1, CCR1, EARLY FLOWERING IN SHORT DAYS, EFS, LAZ2, LAZARUS 2, SDG8, SET DOMAIN GROUP 8||[http://arabidopsis.org/servlets/TairObject?id=136429&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT2G06255||ELF4-L3, ELF4-LIKE 3||[http://arabidopsis.org/servlets/TairObject?id=500231553&type=locus TAIR]||Light signaling pathway||
+
| AT2G06255||ELF4-L3, ELF4-LIKE 3||[http://arabidopsis.org/servlets/TairObject?id=500231553&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT2G16780||MSI2, NFC2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2||[http://arabidopsis.org/servlets/TairObject?id=34537&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
+
| AT2G16780||MSI2, NFC2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2||[http://arabidopsis.org/servlets/TairObject?id=34537&type=locus TAIR]||Autonomous, Vernalization||
 
|-
 
|-
−
| AT2G17770||ATBZIP27, BASIC REGION/LEUCINE ZIPPER MOTIF 27, BZIP27, FD PARALOG, FDP||[http://arabidopsis.org/servlets/TairObject?id=227228&type=locus TAIR]||Ambient temperature pathway, Meristem identity||
+
| AT2G17770||ATBZIP27, BASIC REGION/LEUCINE ZIPPER MOTIF 27, BZIP27, FD PARALOG, FDP||[http://arabidopsis.org/servlets/TairObject?id=227228&type=locus TAIR]||Ambient temperature, Meristem identity||
 
|-
 
|-
−
| AT2G18790||HY3, OOP1, OUT OF PHASE 1, PHYB, PHYTOCHROME B||[http://arabidopsis.org/servlets/TairObject?id=26548&type=locus TAIR]||Light signaling pathway||[http://www.uniprot.org/uniprot/B9U4G3 Grape]
+
| AT2G18790||HY3, OOP1, OUT OF PHASE 1, PHYB, PHYTOCHROME B||[http://arabidopsis.org/servlets/TairObject?id=26548&type=locus TAIR]||Light signaling||[http://www.uniprot.org/uniprot/B9U4G3 Grape]
 
|-
 
|-
−
| AT2G18870||VEL3, VERNALIZATION5/VIN3-LIKE 3, VIL4, VIN3-LIKE 4||[http://arabidopsis.org/servlets/TairObject?id=32249&type=locus TAIR]||Autonomous pathway||
+
| AT2G18870||VEL3, VERNALIZATION5/VIN3-LIKE 3, VIL4, VIN3-LIKE 4||[http://arabidopsis.org/servlets/TairObject?id=32249&type=locus TAIR]||Autonomous||
 
|-
 
|-
−
| AT2G18880||VEL2, VERNALIZATION5/VIN3-LIKE 2, VIL3, VIN3-LIKE 3||[http://arabidopsis.org/servlets/TairObject?id=32230&type=locus TAIR]||Autonomous pathway||
+
| AT2G18880||VEL2, VERNALIZATION5/VIN3-LIKE 2, VIL3, VIN3-LIKE 3||[http://arabidopsis.org/servlets/TairObject?id=32230&type=locus TAIR]||Autonomous||
 
|-
 
|-
−
| AT2G18915||ADAGIO 2, ADO2, LKP2, LOV KELCH PROTEIN 2||[http://arabidopsis.org/servlets/TairObject?id=500231567&type=locus TAIR]||Light signaling pathway||
+
| AT2G18915||ADAGIO 2, ADO2, LKP2, LOV KELCH PROTEIN 2||[http://arabidopsis.org/servlets/TairObject?id=500231567&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT2G19520||ACG1, ATMSI4, FVE, MSI4, MULTICOPY SUPPRESSOR OF IRA1 4, NFC04, NFC4||[http://arabidopsis.org/servlets/TairObject?id=33019&type=locus TAIR]||Ambient temperature pathway, Autonomous pathway||
+
| AT2G19520||ACG1, ATMSI4, FVE, MSI4, MULTICOPY SUPPRESSOR OF IRA1 4, NFC04, NFC4||[http://arabidopsis.org/servlets/TairObject?id=33019&type=locus TAIR]||Ambient temperature, Autonomous||
 
|-
 
|-
−
| AT2G22540||AGAMOUS-LIKE 22, AGL22, SHORT VEGETATIVE PHASE, SVP||[http://arabidopsis.org/servlets/TairObject?id=31694&type=locus TAIR]||Ambient temperature pathway, Vernalization pathway||[http://www.uniprot.org/uniprot/H9CTT8 Grape]
+
| AT2G22540||AGAMOUS-LIKE 22, AGL22, SHORT VEGETATIVE PHASE, SVP||[http://arabidopsis.org/servlets/TairObject?id=31694&type=locus TAIR]||Ambient temperature, Vernalization||[http://www.uniprot.org/uniprot/H9CTT8 Grape]
 
|-
 
|-
−
| AT2G23380||CLF, CURLY LEAF, ICU1, INCURVATA 1, SDG1, SET1, SETDOMAIN 1, SETDOMAIN GROUP 1||[http://arabidopsis.org/servlets/TairObject?id=26534&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
+
| AT2G23380||CLF, CURLY LEAF, ICU1, INCURVATA 1, SDG1, SET1, SETDOMAIN 1, SETDOMAIN GROUP 1||[http://arabidopsis.org/servlets/TairObject?id=26534&type=locus TAIR]||Autonomous, Vernalization||
 
|-
 
|-
−
| AT2G25930||EARLY FLOWERING 3, ELF3, PYK20||[http://arabidopsis.org/servlets/TairObject?id=32082&type=locus TAIR]||Light signaling pathway||
+
| AT2G25930||EARLY FLOWERING 3, ELF3, PYK20||[http://arabidopsis.org/servlets/TairObject?id=32082&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT2G32950||ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, ATCOP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, COP1, DEETIOLATED MUTANT 340, DET340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1||[http://arabidopsis.org/servlets/TairObject?id=34462&type=locus TAIR]||Light signaling pathway||
+
| AT2G32950||ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, ATCOP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, COP1, DEETIOLATED MUTANT 340, DET340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1||[http://arabidopsis.org/servlets/TairObject?id=34462&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT2G33835||FES1, FRIGIDA-ESSENTIAL 1||[http://arabidopsis.org/servlets/TairObject?id=500230872&type=locus TAIR]||Vernalization pathway||
+
| AT2G33835||FES1, FRIGIDA-ESSENTIAL 1||[http://arabidopsis.org/servlets/TairObject?id=500230872&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT2G34140||||[http://arabidopsis.org/servlets/TairObject?id=33865&type=locus TAIR]||Light signaling pathway||
+
| AT2G34140||||[http://arabidopsis.org/servlets/TairObject?id=33865&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT2G40080||EARLY FLOWERING 4, ELF4||[http://arabidopsis.org/servlets/TairObject?id=34766&type=locus TAIR]||Light signaling pathway||
+
| AT2G40080||EARLY FLOWERING 4, ELF4||[http://arabidopsis.org/servlets/TairObject?id=34766&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT2G43410||FPA||[http://arabidopsis.org/servlets/TairObject?id=34279&type=locus TAIR]||Autonomous pathway||
+
| AT2G43410||FPA||[http://arabidopsis.org/servlets/TairObject?id=34279&type=locus TAIR]||Autonomous||
 
|-
 
|-
−
| AT2G46340||SPA1, SUPPRESSOR OF PHYA-105 1||[http://arabidopsis.org/servlets/TairObject?id=31336&type=locus TAIR]||Light signaling pathway||
+
| AT2G46340||SPA1, SUPPRESSOR OF PHYA-105 1||[http://arabidopsis.org/servlets/TairObject?id=31336&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT2G46670||||[http://arabidopsis.org/servlets/TairObject?id=35019&type=locus TAIR]||Light signaling pathway||
+
| AT2G46670||||[http://arabidopsis.org/servlets/TairObject?id=35019&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT2G46790||APRR9, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9, PRR9, PSEUDO-RESPONSE REGULATOR 9, TL1, TOC1-LIKE PROTEIN 1||[http://arabidopsis.org/servlets/TairObject?id=32227&type=locus TAIR]||Light signaling pathway||
+
| AT2G46790||APRR9, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9, PRR9, PSEUDO-RESPONSE REGULATOR 9, TL1, TOC1-LIKE PROTEIN 1||[http://arabidopsis.org/servlets/TairObject?id=32227&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT2G46830||ATCCA1, CCA1, CIRCADIAN CLOCK ASSOCIATED 1||[http://arabidopsis.org/servlets/TairObject?id=32221&type=locus TAIR]||Light signaling pathway||
+
| AT2G46830||ATCCA1, CCA1, CIRCADIAN CLOCK ASSOCIATED 1||[http://arabidopsis.org/servlets/TairObject?id=32221&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT2G47700||RED AND FAR-RED INSENSITIVE 2, RFI2||[http://arabidopsis.org/servlets/TairObject?id=32070&type=locus TAIR]||Light signaling pathway||
+
| AT2G47700||RED AND FAR-RED INSENSITIVE 2, RFI2||[http://arabidopsis.org/servlets/TairObject?id=32070&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT3G02380||ATCOL2, B-BOX DOMAIN PROTEIN 3, BBX3, COL2, CONSTANS-LIKE 2||[http://arabidopsis.org/servlets/TairObject?id=35635&type=locus TAIR]||Flowering pathway integrator, Light signaling pathway||
+
| AT3G02380||ATCOL2, B-BOX DOMAIN PROTEIN 3, BBX3, COL2, CONSTANS-LIKE 2||[http://arabidopsis.org/servlets/TairObject?id=35635&type=locus TAIR]||Flowering integrator, Light signaling||
 
|-
 
|-
−
| AT3G04610||FLK, FLOWERING LOCUS KH DOMAIN||[http://arabidopsis.org/servlets/TairObject?id=37455&type=locus TAIR]||Autonomous pathway||
+
| AT3G04610||FLK, FLOWERING LOCUS KH DOMAIN||[http://arabidopsis.org/servlets/TairObject?id=37455&type=locus TAIR]||Autonomous||
 
|-
 
|-
−
| AT3G07650||B-BOX DOMAIN PROTEIN 7, BBX7, COL9, CONSTANS-LIKE 9||[http://arabidopsis.org/servlets/TairObject?id=38550&type=locus TAIR]||Light signaling pathway||
+
| AT3G07650||B-BOX DOMAIN PROTEIN 7, BBX7, COL9, CONSTANS-LIKE 9||[http://arabidopsis.org/servlets/TairObject?id=38550&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT3G10390||FLD, FLOWERING LOCUS D||[http://arabidopsis.org/servlets/TairObject?id=35869&type=locus TAIR]||Ambient temperature pathway, Autonomous pathway||
+
| AT3G10390||FLD, FLOWERING LOCUS D||[http://arabidopsis.org/servlets/TairObject?id=35869&type=locus TAIR]||Ambient temperature, Autonomous||
 
|-
 
|-
−
| AT3G12810||CHR13, PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, PIE1, SRCAP||[http://arabidopsis.org/servlets/TairObject?id=37964&type=locus TAIR]||Vernalization pathway||
+
| AT3G12810||CHR13, PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, PIE1, SRCAP||[http://arabidopsis.org/servlets/TairObject?id=37964&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT3G13682||LDL2, LSD1-LIKE2||[http://arabidopsis.org/servlets/TairObject?id=38624&type=locus TAIR]||Ambient temperature pathway, Autonomous pathway||
+
| AT3G13682||LDL2, LSD1-LIKE2||[http://arabidopsis.org/servlets/TairObject?id=38624&type=locus TAIR]||Ambient temperature, Autonomous||
 
|-
 
|-
−
| AT3G15354||SPA1-RELATED 3, SPA3||[http://arabidopsis.org/servlets/TairObject?id=500230681&type=locus TAIR]||Light signaling pathway||
+
| AT3G15354||SPA1-RELATED 3, SPA3||[http://arabidopsis.org/servlets/TairObject?id=500230681&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT3G15620||UV REPAIR DEFECTIVE 3, UVR3||[http://arabidopsis.org/servlets/TairObject?id=38932&type=locus TAIR]||Light signaling pathway||
+
| AT3G15620||UV REPAIR DEFECTIVE 3, UVR3||[http://arabidopsis.org/servlets/TairObject?id=38932&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT3G18990||REDUCED VERNALIZATION RESPONSE 1, REM39, REPRODUCTIVE MERISTEM 39, VRN1||[http://arabidopsis.org/servlets/TairObject?id=37620&type=locus TAIR]||Vernalization pathway||
+
| AT3G18990||REDUCED VERNALIZATION RESPONSE 1, REM39, REPRODUCTIVE MERISTEM 39, VRN1||[http://arabidopsis.org/servlets/TairObject?id=37620&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT3G20740||FERTILIZATION-INDEPENDENT ENDOSPERM, FERTILIZATION-INDEPENDENT ENDOSPERM 1, FIE, FIE1, FIS3||[http://arabidopsis.org/servlets/TairObject?id=38691&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
+
| AT3G20740||FERTILIZATION-INDEPENDENT ENDOSPERM, FERTILIZATION-INDEPENDENT ENDOSPERM 1, FIE, FIE1, FIS3||[http://arabidopsis.org/servlets/TairObject?id=38691&type=locus TAIR]||Autonomous, Vernalization||
 
|-
 
|-
−
| AT3G21320||||[http://arabidopsis.org/servlets/TairObject?id=39170&type=locus TAIR]||Light signaling pathway||
+
| AT3G21320||||[http://arabidopsis.org/servlets/TairObject?id=39170&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT3G24440||VERNALIZATION 5, VIL1, VIN3-LIKE 1, VRN5||[http://arabidopsis.org/servlets/TairObject?id=39196&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
+
| AT3G24440||VERNALIZATION 5, VIL1, VIN3-LIKE 1, VRN5||[http://arabidopsis.org/servlets/TairObject?id=39196&type=locus TAIR]||Autonomous, Vernalization||
 
|-
 
|-
−
| AT3G25730||EDF3, ETHYLENE RESPONSE DNA BINDING FACTOR 3||[http://arabidopsis.org/servlets/TairObject?id=37641&type=locus TAIR]||Light signaling pathway||
+
| AT3G25730||EDF3, ETHYLENE RESPONSE DNA BINDING FACTOR 3||[http://arabidopsis.org/servlets/TairObject?id=37641&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT3G33520||ACTIN-RELATED PROTEIN 6, ARP6, ATARP6, EARLY IN SHORT DAYS 1, ESD1, SUF3, SUPPRESSOR OF FRI 3||[http://arabidopsis.org/servlets/TairObject?id=40458&type=locus TAIR]||Ambient temperature pathway, Vernalization pathway||
+
| AT3G33520||ACTIN-RELATED PROTEIN 6, ARP6, ATARP6, EARLY IN SHORT DAYS 1, ESD1, SUF3, SUPPRESSOR OF FRI 3||[http://arabidopsis.org/servlets/TairObject?id=40458&type=locus TAIR]||Ambient temperature, Vernalization||
 
|-
 
|-
−
| AT3G46640||LUX, LUX ARRHYTHMO, PCL1, PHYTOCLOCK 1||[http://arabidopsis.org/servlets/TairObject?id=35747&type=locus TAIR]||Light signaling pathway||
+
| AT3G46640||LUX, LUX ARRHYTHMO, PCL1, PHYTOCLOCK 1||[http://arabidopsis.org/servlets/TairObject?id=35747&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT3G47500||CDF3, CYCLING DOF FACTOR 3||[http://arabidopsis.org/servlets/TairObject?id=36439&type=locus TAIR]||Light signaling pathway||
+
| AT3G47500||CDF3, CYCLING DOF FACTOR 3||[http://arabidopsis.org/servlets/TairObject?id=36439&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT4G00650||FLA, FLOWERING LOCUS A, FRI, FRIGIDA||[http://arabidopsis.org/servlets/TairObject?id=128299&type=locus TAIR]||Vernalization pathway||
+
| AT4G00650||FLA, FLOWERING LOCUS A, FRI, FRIGIDA||[http://arabidopsis.org/servlets/TairObject?id=128299&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT4G02020||EZA1, SDG10, SET DOMAIN-CONTAINING PROTEIN 10, SWINGER, SWN||[http://arabidopsis.org/servlets/TairObject?id=129104&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
+
| AT4G02020||EZA1, SDG10, SET DOMAIN-CONTAINING PROTEIN 10, SWINGER, SWN||[http://arabidopsis.org/servlets/TairObject?id=129104&type=locus TAIR]||Autonomous, Vernalization||
 
|-
 
|-
−
| AT4G02560||LD, LUMINIDEPENDENS||[http://arabidopsis.org/servlets/TairObject?id=26564&type=locus TAIR]||Autonomous pathway||
+
| AT4G02560||LD, LUMINIDEPENDENS||[http://arabidopsis.org/servlets/TairObject?id=26564&type=locus TAIR]||Autonomous||
 
|-
 
|-
−
| AT4G08920||ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, CRYPTOCHROME 1, ELONGATED HYPOCOTYL 4, HY4, OOP2, OUT OF PHASE 2||[http://arabidopsis.org/servlets/TairObject?id=129943&type=locus TAIR]||Light signaling pathway||[http://www.uniprot.org/uniprot/B6REW9 Grape]
+
| AT4G08920||ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, CRYPTOCHROME 1, ELONGATED HYPOCOTYL 4, HY4, OOP2, OUT OF PHASE 2||[http://arabidopsis.org/servlets/TairObject?id=129943&type=locus TAIR]||Light signaling||[http://www.uniprot.org/uniprot/B6REW9 Grape]
 
|-
 
|-
−
| AT4G11110||SPA1-RELATED 2, SPA2||[http://arabidopsis.org/servlets/TairObject?id=129633&type=locus TAIR]||Light signaling pathway||
+
| AT4G11110||SPA1-RELATED 2, SPA2||[http://arabidopsis.org/servlets/TairObject?id=129633&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT4G11880||AGAMOUS-LIKE 14, AGL14||[http://arabidopsis.org/servlets/TairObject?id=129748&type=locus TAIR]||Vernalization pathway||
+
| AT4G11880||AGAMOUS-LIKE 14, AGL14||[http://arabidopsis.org/servlets/TairObject?id=129748&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT4G16250||PHYD, PHYTOCHROME D||[http://arabidopsis.org/servlets/TairObject?id=26567&type=locus TAIR]||Light signaling pathway||
+
| AT4G16250||PHYD, PHYTOCHROME D||[http://arabidopsis.org/servlets/TairObject?id=26567&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT4G16280||FCA||[http://arabidopsis.org/servlets/TairObject?id=128853&type=locus TAIR]||Ambient temperature pathway, Autonomous pathway||[http://www.uniprot.org/uniprot/D2Y3W8 Grape]
+
| AT4G16280||FCA||[http://arabidopsis.org/servlets/TairObject?id=128853&type=locus TAIR]||Ambient temperature, Autonomous||[http://www.uniprot.org/uniprot/D2Y3W8 Grape]
 
|-
 
|-
−
| AT4G16845||REDUCED VERNALIZATION RESPONSE 2, VRN2||[http://arabidopsis.org/servlets/TairObject?id=228106&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
+
| AT4G16845||REDUCED VERNALIZATION RESPONSE 2, VRN2||[http://arabidopsis.org/servlets/TairObject?id=228106&type=locus TAIR]||Autonomous, Vernalization||
 
|-
 
|-
−
| AT4G18130||PHYE, PHYTOCHROME E||[http://arabidopsis.org/servlets/TairObject?id=26568&type=locus TAIR]||Light signaling pathway||[http://www.uniprot.org/uniprot/B9U4G5 Grape]
+
| AT4G18130||PHYE, PHYTOCHROME E||[http://arabidopsis.org/servlets/TairObject?id=26568&type=locus TAIR]||Light signaling||[http://www.uniprot.org/uniprot/B9U4G5 Grape]
 
|-
 
|-
−
| AT4G20370||TSF, TWIN SISTER OF FT||[http://arabidopsis.org/servlets/TairObject?id=26553&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator||
+
| AT4G20370||TSF, TWIN SISTER OF FT||[http://arabidopsis.org/servlets/TairObject?id=26553&type=locus TAIR]||Ambient temperature, Flowering integrator||
 
|-
 
|-
−
| AT4G22950||AGAMOUS-LIKE 19, AGL19, GL19||[http://arabidopsis.org/servlets/TairObject?id=128336&type=locus TAIR]||Vernalization pathway||
+
| AT4G22950||AGAMOUS-LIKE 19, AGL19, GL19||[http://arabidopsis.org/servlets/TairObject?id=128336&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT4G24540||AGAMOUS-LIKE 24, AGL24||[http://arabidopsis.org/servlets/TairObject?id=127586&type=locus TAIR]||Vernalization pathway||
+
| AT4G24540||AGAMOUS-LIKE 24, AGL24||[http://arabidopsis.org/servlets/TairObject?id=127586&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT4G26000||PEP, PEPPER||[http://arabidopsis.org/servlets/TairObject?id=127403&type=locus TAIR]||Vernalization pathway||
+
| AT4G26000||PEP, PEPPER||[http://arabidopsis.org/servlets/TairObject?id=127403&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT4G29730||MSI5, NFC5, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C5||[http://arabidopsis.org/servlets/TairObject?id=129407&type=locus TAIR]||Ambient temperature pathway, Autonomous pathway||
+
| AT4G29730||MSI5, NFC5, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C5||[http://arabidopsis.org/servlets/TairObject?id=129407&type=locus TAIR]||Ambient temperature, Autonomous||
 
|-
 
|-
−
| AT4G30200||VEL1, VERNALIZATION5/VIN3-LIKE 1, VIL2, VIN3-LIKE 2||[http://arabidopsis.org/servlets/TairObject?id=128580&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
+
| AT4G30200||VEL1, VERNALIZATION5/VIN3-LIKE 1, VIL2, VIN3-LIKE 2||[http://arabidopsis.org/servlets/TairObject?id=128580&type=locus TAIR]||Autonomous, Vernalization||
 
|-
 
|-
−
| AT4G34530||CIB1, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1||[http://arabidopsis.org/servlets/TairObject?id=130033&type=locus TAIR]||Light signaling pathway||
+
| AT4G34530||CIB1, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1||[http://arabidopsis.org/servlets/TairObject?id=130033&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT4G35050||MSI3, NFC3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3||[http://arabidopsis.org/servlets/TairObject?id=129003&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
+
| AT4G35050||MSI3, NFC3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3||[http://arabidopsis.org/servlets/TairObject?id=129003&type=locus TAIR]||Autonomous, Vernalization||
 
|-
 
|-
−
| AT4G35900||ATBZIP14, FD, FD-1||[http://arabidopsis.org/servlets/TairObject?id=128068&type=locus TAIR]||Ambient temperature pathway, Meristem identity||
+
| AT4G35900||ATBZIP14, FD, FD-1||[http://arabidopsis.org/servlets/TairObject?id=128068&type=locus TAIR]||Ambient temperature, Meristem identity||
 
|-
 
|-
−
| AT5G02810||APRR7, PRR7, PSEUDO-RESPONSE REGULATOR 7||[http://arabidopsis.org/servlets/TairObject?id=131538&type=locus TAIR]||Light signaling pathway||
+
| AT5G02810||APRR7, PRR7, PSEUDO-RESPONSE REGULATOR 7||[http://arabidopsis.org/servlets/TairObject?id=131538&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT5G03840||TERMINAL FLOWER 1, TFL1||[http://arabidopsis.org/servlets/TairObject?id=131459&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator||[http://www.uniprot.org/uniprot/Q84MI7 Grape], [http://www.uniprot.org/uniprot/G5CJU3 Strawberry]
+
| AT5G03840||TERMINAL FLOWER 1, TFL1||[http://arabidopsis.org/servlets/TairObject?id=131459&type=locus TAIR]||Ambient temperature, Flowering integrator||[http://www.uniprot.org/uniprot/Q84MI7 Grape], [http://www.uniprot.org/uniprot/G5CJU3 Strawberry]
 
|-
 
|-
−
| AT5G08230||||[http://arabidopsis.org/servlets/TairObject?id=135669&type=locus TAIR]||Vernalization pathway||
+
| AT5G08230||||[http://arabidopsis.org/servlets/TairObject?id=135669&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT5G08330||CCA1 HIKING EXPEDITION, CHE, TRANSCRIPTION FACTOR TCP21, TCP21||[http://www.uniprot.org/uniprot/Q9FTA2 UniProtKB]||Light signaling pathway||
+
| AT5G08330||CCA1 HIKING EXPEDITION, CHE, TRANSCRIPTION FACTOR TCP21, TCP21||[http://www.uniprot.org/uniprot/Q9FTA2 UniProtKB]||Light signaling||
 
|-
 
|-
−
| AT5G10140||AGAMOUS-LIKE 25, AGL25, FLC, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F||[http://arabidopsis.org/servlets/TairObject?id=136002&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway||[http://www.uniprot.org/uniprot/D1MDP4 Grape]
+
| AT5G10140||AGAMOUS-LIKE 25, AGL25, FLC, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F||[http://arabidopsis.org/servlets/TairObject?id=136002&type=locus TAIR]||Ambient temperature, Flowering integrator, Vernalization||[http://www.uniprot.org/uniprot/D1MDP4 Grape]
 
|-
 
|-
−
| AT5G13480||FY||[http://arabidopsis.org/servlets/TairObject?id=136108&type=locus TAIR]||Autonomous pathway||
+
| AT5G13480||FY||[http://arabidopsis.org/servlets/TairObject?id=136108&type=locus TAIR]||Autonomous||
 
|-
 
|-
−
| AT5G15840||B-BOX DOMAIN PROTEIN 1, BBX1, CO, CONSTANS, FG||[http://arabidopsis.org/servlets/TairObject?id=130492&type=locus TAIR]||Flowering pathway integrator, Light signaling pathway||
+
| AT5G15840||B-BOX DOMAIN PROTEIN 1, BBX1, CO, CONSTANS, FG||[http://arabidopsis.org/servlets/TairObject?id=130492&type=locus TAIR]||Flowering integrator, Light signaling||
 
|-
 
|-
−
| AT5G15850||ATCOL1, B-BOX DOMAIN PROTEIN 2, BBX2, COL1, CONSTANS-LIKE 1||[http://arabidopsis.org/servlets/TairObject?id=130495&type=locus TAIR]||Flowering pathway integrator, Light signaling pathway||
+
| AT5G15850||ATCOL1, B-BOX DOMAIN PROTEIN 2, BBX2, COL1, CONSTANS-LIKE 1||[http://arabidopsis.org/servlets/TairObject?id=130495&type=locus TAIR]||Flowering integrator, Light signaling||
 
|-
 
|-
−
| AT5G23150||ENHANCER OF AG-4 2, HUA2||[http://arabidopsis.org/servlets/TairObject?id=135220&type=locus TAIR]||Vernalization pathway||
+
| AT5G23150||ENHANCER OF AG-4 2, HUA2||[http://arabidopsis.org/servlets/TairObject?id=135220&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT5G23280||||[http://arabidopsis.org/servlets/TairObject?id=133661&type=locus TAIR]||Light signaling pathway||
+
| AT5G23280||||[http://arabidopsis.org/servlets/TairObject?id=133661&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT5G24470||APRR5, PRR5, PSEUDO-RESPONSE REGULATOR 5||[http://arabidopsis.org/servlets/TairObject?id=135985&type=locus TAIR]||Light signaling pathway||
+
| AT5G24470||APRR5, PRR5, PSEUDO-RESPONSE REGULATOR 5||[http://arabidopsis.org/servlets/TairObject?id=135985&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT5G24930||ATCOL4, B-BOX DOMAIN PROTEIN 5, BBX5, COL4, CONSTANS-LIKE 4||[http://arabidopsis.org/servlets/TairObject?id=131285&type=locus TAIR]||Light signaling pathway||
+
| AT5G24930||ATCOL4, B-BOX DOMAIN PROTEIN 5, BBX5, COL4, CONSTANS-LIKE 4||[http://arabidopsis.org/servlets/TairObject?id=131285&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT5G35840||PHYC, PHYTOCHROME C||[http://arabidopsis.org/servlets/TairObject?id=133466&type=locus TAIR]||Light signaling pathway||[http://www.uniprot.org/uniprot/B9U4G4 Grape]
+
| AT5G35840||PHYC, PHYTOCHROME C||[http://arabidopsis.org/servlets/TairObject?id=133466&type=locus TAIR]||Light signaling||[http://www.uniprot.org/uniprot/B9U4G4 Grape]
 
|-
 
|-
−
| AT5G37055||ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING||[http://arabidopsis.org/servlets/TairObject?id=500231974&type=locus TAIR]||Vernalization pathway||
+
| AT5G37055||ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING||[http://arabidopsis.org/servlets/TairObject?id=500231974&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT5G39660||CDF2, CYCLING DOF FACTOR 2||[http://arabidopsis.org/servlets/TairObject?id=133414&type=locus TAIR]||Light signaling pathway||
+
| AT5G39660||CDF2, CYCLING DOF FACTOR 2||[http://arabidopsis.org/servlets/TairObject?id=133414&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT5G42790||ARS5, ARSENIC TOLERANCE 5, ATPSM30, PAF1, PROTEASOME ALPHA SUBUNIT F1||[http://arabidopsis.org/servlets/TairObject?id=133505&type=locus TAIR]||Vernalization pathway||
+
| AT5G42790||ARS5, ARSENIC TOLERANCE 5, ATPSM30, PAF1, PROTEASOME ALPHA SUBUNIT F1||[http://arabidopsis.org/servlets/TairObject?id=133505&type=locus TAIR]||Vernalization||
 
|-
 
|-
−
| AT5G48250||B-BOX DOMAIN PROTEIN 8, BBX8||[http://arabidopsis.org/servlets/TairObject?id=133393&type=locus TAIR]||Light signaling pathway||
+
| AT5G48250||B-BOX DOMAIN PROTEIN 8, BBX8||[http://arabidopsis.org/servlets/TairObject?id=133393&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT5G57360||ADAGIO 1, ADO1, FKF1-LIKE PROTEIN 2, FKL2, LKP1, LOV KELCH PROTEIN 1, ZEITLUPE, ZTL||[http://arabidopsis.org/servlets/TairObject?id=134481&type=locus TAIR]||Light signaling pathway||
+
| AT5G57360||ADAGIO 1, ADO1, FKF1-LIKE PROTEIN 2, FKL2, LKP1, LOV KELCH PROTEIN 1, ZEITLUPE, ZTL||[http://arabidopsis.org/servlets/TairObject?id=134481&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT5G57380||VERNALIZATION INSENSITIVE 3, VIN3||[http://arabidopsis.org/servlets/TairObject?id=134483&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
+
| AT5G57380||VERNALIZATION INSENSITIVE 3, VIN3||[http://arabidopsis.org/servlets/TairObject?id=134483&type=locus TAIR]||Autonomous, Vernalization||
 
|-
 
|-
−
| AT5G57660||ATCOL5, B-BOX DOMAIN PROTEIN 6, BBX6, COL5, CONSTANS-LIKE 5||[http://arabidopsis.org/servlets/TairObject?id=134422&type=locus TAIR]||Light signaling pathway||
+
| AT5G57660||ATCOL5, B-BOX DOMAIN PROTEIN 6, BBX6, COL5, CONSTANS-LIKE 5||[http://arabidopsis.org/servlets/TairObject?id=134422&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT5G58230||ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, ATMSI1, MATERNAL EFFECT EMBRYO ARREST 70, MEE70, MSI1, MULTICOPY SUPRESSOR OF IRA1||[http://arabidopsis.org/servlets/TairObject?id=132921&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
+
| AT5G58230||ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, ATMSI1, MATERNAL EFFECT EMBRYO ARREST 70, MEE70, MSI1, MULTICOPY SUPRESSOR OF IRA1||[http://arabidopsis.org/servlets/TairObject?id=132921&type=locus TAIR]||Autonomous, Vernalization||
 
|-
 
|-
−
| AT5G59570||BOA, BROTHER OF LUX ARRHYTHMO||[http://arabidopsis.org/servlets/TairObject?id=131156&type=locus TAIR]||Light signaling pathway||
+
| AT5G59570||BOA, BROTHER OF LUX ARRHYTHMO||[http://arabidopsis.org/servlets/TairObject?id=131156&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT5G60100||APRR3, PRR3, PSEUDO-RESPONSE REGULATOR 3||[http://arabidopsis.org/servlets/TairObject?id=133317&type=locus TAIR]||Light signaling pathway||
+
| AT5G60100||APRR3, PRR3, PSEUDO-RESPONSE REGULATOR 3||[http://arabidopsis.org/servlets/TairObject?id=133317&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT5G61380||APRR1, ATTOC1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, TOC1||[http://arabidopsis.org/servlets/TairObject?id=133196&type=locus TAIR]||Light signaling pathway||
+
| AT5G61380||APRR1, ATTOC1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, TOC1||[http://arabidopsis.org/servlets/TairObject?id=133196&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT5G62430||CDF1, CYCLING DOF FACTOR 1||[http://arabidopsis.org/servlets/TairObject?id=131911&type=locus TAIR]||Light signaling pathway||
+
| AT5G62430||CDF1, CYCLING DOF FACTOR 1||[http://arabidopsis.org/servlets/TairObject?id=131911&type=locus TAIR]||Light signaling||
 
|-
 
|-
−
| AT5G65050||AGAMOUS-LIKE 31, AGL31, MADS AFFECTING FLOWERING 2, MAF2||[http://arabidopsis.org/servlets/TairObject?id=135154&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway||
+
| AT5G65050||AGAMOUS-LIKE 31, AGL31, MADS AFFECTING FLOWERING 2, MAF2||[http://arabidopsis.org/servlets/TairObject?id=135154&type=locus TAIR]||Ambient temperature, Flowering integrator, Vernalization||
 
|-
 
|-
−
| AT5G65060||AGAMOUS-LIKE 70, AGL70, FCL3, MADS AFFECTING FLOWERING 3, MAF3||[http://arabidopsis.org/servlets/TairObject?id=130633&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway||
+
| AT5G65060||AGAMOUS-LIKE 70, AGL70, FCL3, MADS AFFECTING FLOWERING 3, MAF3||[http://arabidopsis.org/servlets/TairObject?id=130633&type=locus TAIR]||Ambient temperature, Flowering integrator, Vernalization||
 
|-
 
|-
−
| AT5G65070||AGAMOUS-LIKE 69, AGL69, FCL4, MADS AFFECTING FLOWERING 4, MAF4||[http://arabidopsis.org/servlets/TairObject?id=130634&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway||
+
| AT5G65070||AGAMOUS-LIKE 69, AGL69, FCL4, MADS AFFECTING FLOWERING 4, MAF4||[http://arabidopsis.org/servlets/TairObject?id=130634&type=locus TAIR]||Ambient temperature, Flowering integrator, Vernalization||
 
|-
 
|-
−
| AT5G65080||AGAMOUS-LIKE 68, AGL68, MADS AFFECTING FLOWERING 5, MAF5||[http://arabidopsis.org/servlets/TairObject?id=130635&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway||
+
| AT5G65080||AGAMOUS-LIKE 68, AGL68, MADS AFFECTING FLOWERING 5, MAF5||[http://arabidopsis.org/servlets/TairObject?id=130635&type=locus TAIR]||Ambient temperature, Flowering integrator, Vernalization||
 
|}
 
|}

Revision as of 22:57, 5 March 2013

By Austin Mudd - Spring 2013


To Do

  • Write introduction and procedure sections
  • Aggregate all sequences into a single document in proper FASTA format


Introduction

The factors affecting time of flowering from the Max Planck Institute for Plant Breeding Research


Procedure

  • Overall procedure for finding the genes, running with GenSAS, determining SSRs, etc


Gallery of Arabidopsis Flowering Pathways


105 Flowering Genes

This table lists all of the genes involved in the ambient temperature, autonomous, light signaling, and vernalization pathways. All Arabidopsis genes are compiled from Jung et al., 2012. All potential orthologs are found via UniProt Grape or UniProt Strawberry nomenclature search.

Arabidopsis Locus Other Names AA Sequence Pathway Potential Ortholog
AT1G01060 LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1 TAIR Light signaling
AT1G02580 EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEA, MEDEA, SDG5, SET DOMAIN-CONTAINING PROTEIN 5 TAIR Autonomous, Vernalization
AT1G04400 AT-PHH1, ATCRY2, CRY2, CRYPTOCHROME 2, FHA, PHH1 TAIR Light signaling
AT1G09570 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A TAIR Light signaling Grape
AT1G13260 EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, RELATED TO ABI3/VP1 1 TAIR Light signaling
AT1G20330 COTYLEDON VASCULAR PATTERN 1, CVP1, FRILL1, FRL1, SMT2, STEROL METHYLTRANSFERASE 2 TAIR Vernalization
AT1G22770 FB, GI, GIGANTEA TAIR Light signaling
AT1G25560 EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 TAIR Light signaling
AT1G26790 TAIR Light signaling
AT1G29160 TAIR Light signaling
AT1G30970 SUF4, SUPPRESSOR OF FRIGIDA4 TAIR Vernalization
AT1G31814 FRIGIDA LIKE 2, FRL2 TAIR Vernalization
AT1G47250 20S PROTEASOME ALPHA SUBUNIT F2, PAF2 TAIR Vernalization
AT1G53090 SPA1-RELATED 4, SPA4 TAIR Light signaling
AT1G62830 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATLSD1, ATSWP1, LDL1, LSD1, LSD1-LIKE 1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1 TAIR Ambient temperature, Autonomous
AT1G65480 FLOWERING LOCUS T, FT TAIR Ambient temperature, Flowering integrator Grape, Strawberry
AT1G68050 "FLAVIN-BINDING, KELCH REPEAT, F BOX 1", ADO3, FKF1 TAIR Light signaling
AT1G68840 ATRAV2, EDF2, ETHYLENE RESPONSE DNA BINDING FACTOR 2, RAP2.8, RAV2, RELATED TO ABI3/VP1 2, RELATED TO AP2 8, TEM2, TEMPRANILLO 2 TAIR Light signaling
AT1G77080 AGAMOUS-LIKE 27, AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1 TAIR Ambient temperature, Flowering integrator, Vernalization
AT1G77300 ASH1 HOMOLOG 2, ASHH2, CAROTENOID CHLOROPLAST REGULATORY1, CCR1, EARLY FLOWERING IN SHORT DAYS, EFS, LAZ2, LAZARUS 2, SDG8, SET DOMAIN GROUP 8 TAIR Vernalization
AT2G06255 ELF4-L3, ELF4-LIKE 3 TAIR Light signaling
AT2G16780 MSI2, NFC2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2 TAIR Autonomous, Vernalization
AT2G17770 ATBZIP27, BASIC REGION/LEUCINE ZIPPER MOTIF 27, BZIP27, FD PARALOG, FDP TAIR Ambient temperature, Meristem identity
AT2G18790 HY3, OOP1, OUT OF PHASE 1, PHYB, PHYTOCHROME B TAIR Light signaling Grape
AT2G18870 VEL3, VERNALIZATION5/VIN3-LIKE 3, VIL4, VIN3-LIKE 4 TAIR Autonomous
AT2G18880 VEL2, VERNALIZATION5/VIN3-LIKE 2, VIL3, VIN3-LIKE 3 TAIR Autonomous
AT2G18915 ADAGIO 2, ADO2, LKP2, LOV KELCH PROTEIN 2 TAIR Light signaling
AT2G19520 ACG1, ATMSI4, FVE, MSI4, MULTICOPY SUPPRESSOR OF IRA1 4, NFC04, NFC4 TAIR Ambient temperature, Autonomous
AT2G22540 AGAMOUS-LIKE 22, AGL22, SHORT VEGETATIVE PHASE, SVP TAIR Ambient temperature, Vernalization Grape
AT2G23380 CLF, CURLY LEAF, ICU1, INCURVATA 1, SDG1, SET1, SETDOMAIN 1, SETDOMAIN GROUP 1 TAIR Autonomous, Vernalization
AT2G25930 EARLY FLOWERING 3, ELF3, PYK20 TAIR Light signaling
AT2G32950 ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, ATCOP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, COP1, DEETIOLATED MUTANT 340, DET340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1 TAIR Light signaling
AT2G33835 FES1, FRIGIDA-ESSENTIAL 1 TAIR Vernalization
AT2G34140 TAIR Light signaling
AT2G40080 EARLY FLOWERING 4, ELF4 TAIR Light signaling
AT2G43410 FPA TAIR Autonomous
AT2G46340 SPA1, SUPPRESSOR OF PHYA-105 1 TAIR Light signaling
AT2G46670 TAIR Light signaling
AT2G46790 APRR9, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9, PRR9, PSEUDO-RESPONSE REGULATOR 9, TL1, TOC1-LIKE PROTEIN 1 TAIR Light signaling
AT2G46830 ATCCA1, CCA1, CIRCADIAN CLOCK ASSOCIATED 1 TAIR Light signaling
AT2G47700 RED AND FAR-RED INSENSITIVE 2, RFI2 TAIR Light signaling
AT3G02380 ATCOL2, B-BOX DOMAIN PROTEIN 3, BBX3, COL2, CONSTANS-LIKE 2 TAIR Flowering integrator, Light signaling
AT3G04610 FLK, FLOWERING LOCUS KH DOMAIN TAIR Autonomous
AT3G07650 B-BOX DOMAIN PROTEIN 7, BBX7, COL9, CONSTANS-LIKE 9 TAIR Light signaling
AT3G10390 FLD, FLOWERING LOCUS D TAIR Ambient temperature, Autonomous
AT3G12810 CHR13, PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, PIE1, SRCAP TAIR Vernalization
AT3G13682 LDL2, LSD1-LIKE2 TAIR Ambient temperature, Autonomous
AT3G15354 SPA1-RELATED 3, SPA3 TAIR Light signaling
AT3G15620 UV REPAIR DEFECTIVE 3, UVR3 TAIR Light signaling
AT3G18990 REDUCED VERNALIZATION RESPONSE 1, REM39, REPRODUCTIVE MERISTEM 39, VRN1 TAIR Vernalization
AT3G20740 FERTILIZATION-INDEPENDENT ENDOSPERM, FERTILIZATION-INDEPENDENT ENDOSPERM 1, FIE, FIE1, FIS3 TAIR Autonomous, Vernalization
AT3G21320 TAIR Light signaling
AT3G24440 VERNALIZATION 5, VIL1, VIN3-LIKE 1, VRN5 TAIR Autonomous, Vernalization
AT3G25730 EDF3, ETHYLENE RESPONSE DNA BINDING FACTOR 3 TAIR Light signaling
AT3G33520 ACTIN-RELATED PROTEIN 6, ARP6, ATARP6, EARLY IN SHORT DAYS 1, ESD1, SUF3, SUPPRESSOR OF FRI 3 TAIR Ambient temperature, Vernalization
AT3G46640 LUX, LUX ARRHYTHMO, PCL1, PHYTOCLOCK 1 TAIR Light signaling
AT3G47500 CDF3, CYCLING DOF FACTOR 3 TAIR Light signaling
AT4G00650 FLA, FLOWERING LOCUS A, FRI, FRIGIDA TAIR Vernalization
AT4G02020 EZA1, SDG10, SET DOMAIN-CONTAINING PROTEIN 10, SWINGER, SWN TAIR Autonomous, Vernalization
AT4G02560 LD, LUMINIDEPENDENS TAIR Autonomous
AT4G08920 ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, CRYPTOCHROME 1, ELONGATED HYPOCOTYL 4, HY4, OOP2, OUT OF PHASE 2 TAIR Light signaling Grape
AT4G11110 SPA1-RELATED 2, SPA2 TAIR Light signaling
AT4G11880 AGAMOUS-LIKE 14, AGL14 TAIR Vernalization
AT4G16250 PHYD, PHYTOCHROME D TAIR Light signaling
AT4G16280 FCA TAIR Ambient temperature, Autonomous Grape
AT4G16845 REDUCED VERNALIZATION RESPONSE 2, VRN2 TAIR Autonomous, Vernalization
AT4G18130 PHYE, PHYTOCHROME E TAIR Light signaling Grape
AT4G20370 TSF, TWIN SISTER OF FT TAIR Ambient temperature, Flowering integrator
AT4G22950 AGAMOUS-LIKE 19, AGL19, GL19 TAIR Vernalization
AT4G24540 AGAMOUS-LIKE 24, AGL24 TAIR Vernalization
AT4G26000 PEP, PEPPER TAIR Vernalization
AT4G29730 MSI5, NFC5, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C5 TAIR Ambient temperature, Autonomous
AT4G30200 VEL1, VERNALIZATION5/VIN3-LIKE 1, VIL2, VIN3-LIKE 2 TAIR Autonomous, Vernalization
AT4G34530 CIB1, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1 TAIR Light signaling
AT4G35050 MSI3, NFC3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3 TAIR Autonomous, Vernalization
AT4G35900 ATBZIP14, FD, FD-1 TAIR Ambient temperature, Meristem identity
AT5G02810 APRR7, PRR7, PSEUDO-RESPONSE REGULATOR 7 TAIR Light signaling
AT5G03840 TERMINAL FLOWER 1, TFL1 TAIR Ambient temperature, Flowering integrator Grape, Strawberry
AT5G08230 TAIR Vernalization
AT5G08330 CCA1 HIKING EXPEDITION, CHE, TRANSCRIPTION FACTOR TCP21, TCP21 UniProtKB Light signaling
AT5G10140 AGAMOUS-LIKE 25, AGL25, FLC, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F TAIR Ambient temperature, Flowering integrator, Vernalization Grape
AT5G13480 FY TAIR Autonomous
AT5G15840 B-BOX DOMAIN PROTEIN 1, BBX1, CO, CONSTANS, FG TAIR Flowering integrator, Light signaling
AT5G15850 ATCOL1, B-BOX DOMAIN PROTEIN 2, BBX2, COL1, CONSTANS-LIKE 1 TAIR Flowering integrator, Light signaling
AT5G23150 ENHANCER OF AG-4 2, HUA2 TAIR Vernalization
AT5G23280 TAIR Light signaling
AT5G24470 APRR5, PRR5, PSEUDO-RESPONSE REGULATOR 5 TAIR Light signaling
AT5G24930 ATCOL4, B-BOX DOMAIN PROTEIN 5, BBX5, COL4, CONSTANS-LIKE 4 TAIR Light signaling
AT5G35840 PHYC, PHYTOCHROME C TAIR Light signaling Grape
AT5G37055 ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING TAIR Vernalization
AT5G39660 CDF2, CYCLING DOF FACTOR 2 TAIR Light signaling
AT5G42790 ARS5, ARSENIC TOLERANCE 5, ATPSM30, PAF1, PROTEASOME ALPHA SUBUNIT F1 TAIR Vernalization
AT5G48250 B-BOX DOMAIN PROTEIN 8, BBX8 TAIR Light signaling
AT5G57360 ADAGIO 1, ADO1, FKF1-LIKE PROTEIN 2, FKL2, LKP1, LOV KELCH PROTEIN 1, ZEITLUPE, ZTL TAIR Light signaling
AT5G57380 VERNALIZATION INSENSITIVE 3, VIN3 TAIR Autonomous, Vernalization
AT5G57660 ATCOL5, B-BOX DOMAIN PROTEIN 6, BBX6, COL5, CONSTANS-LIKE 5 TAIR Light signaling
AT5G58230 ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, ATMSI1, MATERNAL EFFECT EMBRYO ARREST 70, MEE70, MSI1, MULTICOPY SUPRESSOR OF IRA1 TAIR Autonomous, Vernalization
AT5G59570 BOA, BROTHER OF LUX ARRHYTHMO TAIR Light signaling
AT5G60100 APRR3, PRR3, PSEUDO-RESPONSE REGULATOR 3 TAIR Light signaling
AT5G61380 APRR1, ATTOC1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, TOC1 TAIR Light signaling
AT5G62430 CDF1, CYCLING DOF FACTOR 1 TAIR Light signaling
AT5G65050 AGAMOUS-LIKE 31, AGL31, MADS AFFECTING FLOWERING 2, MAF2 TAIR Ambient temperature, Flowering integrator, Vernalization
AT5G65060 AGAMOUS-LIKE 70, AGL70, FCL3, MADS AFFECTING FLOWERING 3, MAF3 TAIR Ambient temperature, Flowering integrator, Vernalization
AT5G65070 AGAMOUS-LIKE 69, AGL69, FCL4, MADS AFFECTING FLOWERING 4, MAF4 TAIR Ambient temperature, Flowering integrator, Vernalization
AT5G65080 AGAMOUS-LIKE 68, AGL68, MADS AFFECTING FLOWERING 5, MAF5 TAIR Ambient temperature, Flowering integrator, Vernalization
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