Difference between revisions of "Time of bloom SSR Results"
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| − | AT5G24470 (APRR5, PRR5, PSEUDO-RESPONSE REGULATOR 5 of the Light Signaling pathway) found in Scaffold 00001 (query sequence starts at base 322798) | + | All SSR results from the [[Time of bloom]] experimentation are below. |
| − | AT2G46790 (APRR9, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9, PRR9, PSEUDO-RESPONSE REGULATOR 9, TL1, TOC1-LIKE PROTEIN 1 of the Light Signaling pathway) found in Scaffold 00001 (query sequence starts at base 322801) | + | |
| + | |||
| + | <BR/>AT5G24470 (APRR5, PRR5, PSEUDO-RESPONSE REGULATOR 5 of the Light Signaling pathway) found in Scaffold 00001 (query sequence starts at base 322798) | ||
| + | <BR/>AT2G46790 (APRR9, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9, PRR9, PSEUDO-RESPONSE REGULATOR 9, TL1, TOC1-LIKE PROTEIN 1 of the Light Signaling pathway) found in Scaffold 00001 (query sequence starts at base 322801) | ||
1) | 1) | ||
For Primer GTCTTCTTGGCTTTCTCTTCCA | For Primer GTCTTCTTGGCTTTCTCTTCCA | ||
| − | Rev Primer CTTCCACCGCCACTAATATCTC | + | - Rev Primer CTTCCACCGCCACTAATATCTC |
| − | Repeats (tc) x11 PCR product = 157 bp start at base 324273 | + | - Repeats (tc) x11 - PCR product = 157 bp - start at base 324273 |
2) | 2) | ||
For Primer CGCCTTTTAATTCCTAGTGGTG | For Primer CGCCTTTTAATTCCTAGTGGTG | ||
| − | Rev Primer TGTTGCCTTATTGTGAGCCTAA | + | - Rev Primer TGTTGCCTTATTGTGAGCCTAA |
| − | Repeats (tc) x15 PCR product = 153 bp start at base 324766 | + | - Repeats (tc) x15 - PCR product = 153 bp - start at base 324766 |
3) | 3) | ||
For Primer AGCCAATAACCTTTCCTGTTGA | For Primer AGCCAATAACCTTTCCTGTTGA | ||
| − | Rev Primer GTGCCTATCAGCCACTCTTTTT | + | - Rev Primer GTGCCTATCAGCCACTCTTTTT |
| − | Repeats (tc) x9 PCR product = 238 bp start at base 314842 | + | - Repeats (tc) x9 - PCR product = 238 bp - start at base 314842 |
| − | AT4G02560 (LD, LUMINIDEPENDENS of the Autonomous pathway) found in Scaffold 00002 (query sequence starts at base 158601) | + | <BR/>AT4G02560 (LD, LUMINIDEPENDENS of the Autonomous pathway) found in Scaffold 00002 (query sequence starts at base 158601) |
1) | 1) | ||
For Primer ACTGGATCAGTCTCCGACTCTC | For Primer ACTGGATCAGTCTCCGACTCTC | ||
| − | Rev Primer GAGTTACGGCTAGGGTTAGGGT | + | - Rev Primer GAGTTACGGCTAGGGTTAGGGT |
| − | Repeats (tc) x11 PCR product = 204 bp start at base 155393 | + | - Repeats (tc) x11 - PCR product = 204 bp - start at base 155393 |
2) | 2) | ||
For Primer TTTCACTTTTAGCCACCACCTT | For Primer TTTCACTTTTAGCCACCACCTT | ||
| − | Rev Primer CGAATCCATCAGCTAAAAGGAC | + | - Rev Primer CGAATCCATCAGCTAAAAGGAC |
| − | Repeats (tc) x11 PCR product = 190 bp start at base 166784 | + | - Repeats (tc) x11 - PCR product = 190 bp - start at base 166784 |
3) | 3) | ||
For Primer GTATGCTGCTGCAAACAATGAT | For Primer GTATGCTGCTGCAAACAATGAT | ||
| − | Rev Primer CTTGGAGAAGTGACAGAAAGCA | + | - Rev Primer CTTGGAGAAGTGACAGAAAGCA |
| − | Repeats (tc) x44 PCR product = 236 bp start at base 341579 | + | - Repeats (tc) x44 - PCR product = 236 bp - start at base 341579 |
| − | AT4G26000 (PEP, PEPPER of the Vernalization pathway) found in Scaffold 00021 (query sequence starts at base 157278) | + | <BR/>AT4G26000 (PEP, PEPPER of the Vernalization pathway) found in Scaffold 00021 (query sequence starts at base 157278) |
1) | 1) | ||
For Primer CACAAGGATGCTCAAACCATAA | For Primer CACAAGGATGCTCAAACCATAA | ||
| − | Rev Primer AAATGGTTGGATACGAGCTGTT | + | - Rev Primer AAATGGTTGGATACGAGCTGTT |
| − | Repeats (at) x8 PCR product = 280 bp start at base 148634 | + | - Repeats (at) x8 - PCR product = 280 bp - start at base 148634 |
2) | 2) | ||
For Primer ACGAGGAGTGAGAGAGAAGTGG | For Primer ACGAGGAGTGAGAGAGAAGTGG | ||
| − | Rev Primer CAGACACAAATTGGAGAGCAAG | + | - Rev Primer CAGACACAAATTGGAGAGCAAG |
| − | Repeats (tc) x12 PCR product = 297 bp start at base 145700 | + | - Repeats (tc) x12 - PCR product = 297 bp - start at base 145700 |
3) | 3) | ||
For Primer CTGGGACCAGATAATTCGAAAG | For Primer CTGGGACCAGATAATTCGAAAG | ||
| − | Rev Primer TGACACATGTTGATTGGTCTGA | + | - Rev Primer TGACACATGTTGATTGGTCTGA |
| − | Repeats (ga) x10 PCR product = 219 bp start at base 116906 | + | - Repeats (ga) x10 - PCR product = 219 bp - start at base 116906 |
| − | AT2G18880 (VEL2, VERNALIZATION5/VIN3-LIKE 2, VIL3, VIN3-LIKE 3 of the Autonomous pathway) found in Scaffold 00026 (query sequence starts at base 369396) | + | <BR/>AT2G18880 (VEL2, VERNALIZATION5/VIN3-LIKE 2, VIL3, VIN3-LIKE 3 of the Autonomous pathway) found in Scaffold 00026 (query sequence starts at base 369396) |
| − | AT5G57380 (VERNALIZATION INSENSITIVE 3, VIN3 of the Autonomous and Vernalization pathways) found in Scaffold 00026 (query sequence starts at base 369405) | + | <br/>AT5G57380 (VERNALIZATION INSENSITIVE 3, VIN3 of the Autonomous and Vernalization pathways) found in Scaffold 00026 (query sequence starts at base 369405) |
| − | AT4G30200 (VEL1, VERNALIZATION5/VIN3-LIKE 1, VIL2, VIN3-LIKE 2 of the Autonomous and Vernalization pathways) found in Scaffold 00026 (query sequence starts at base 369417) | + | <BR/>AT4G30200 (VEL1, VERNALIZATION5/VIN3-LIKE 1, VIL2, VIN3-LIKE 2 of the Autonomous and Vernalization pathways) found in Scaffold 00026 (query sequence starts at base 369417) |
1) | 1) | ||
For Primer CGAGTCACCTATCACCAGATCA | For Primer CGAGTCACCTATCACCAGATCA | ||
| − | Rev Primer TCCTCCAAACCTTACAAAAGGA | + | - Rev Primer TCCTCCAAACCTTACAAAAGGA |
| − | Repeats (ta) x10 PCR product = 244 bp start at base 362422 | + | - Repeats (ta) x10 - PCR product = 244 bp - start at base 362422 |
2) | 2) | ||
For Primer AAAAAGGAAGAGGAAGAATCGG | For Primer AAAAAGGAAGAGGAAGAATCGG | ||
| − | Rev Primer AGCCGACGACGACTCTATCTAA | + | - Rev Primer AGCCGACGACGACTCTATCTAA |
| − | Repeats (ag) x19 PCR product = 260 bp start at base 362158 | + | - Repeats (ag) x19 - PCR product = 260 bp - start at base 362158 |
3) | 3) | ||
For Primer CTGCTACTGTCACCATCAGAGG | For Primer CTGCTACTGTCACCATCAGAGG | ||
| − | Rev Primer TCTTCCTCTCGTCTCATATGCC | + | - Rev Primer TCTTCCTCTCGTCTCATATGCC |
| − | Repeats (ga) x11 PCR product = 297 bp start at base 344594 | + | - Repeats (ga) x11 - PCR product = 297 bp - start at base 344594 |
| − | AT2G18915 (ADAGIO 2, ADO2, LKP2, LOV KELCH PROTEIN 2 of the Light Signaling pathway) found in Scaffold 00026 (query sequence starts at base 445582) | + | <BR/>AT2G18915 (ADAGIO 2, ADO2, LKP2, LOV KELCH PROTEIN 2 of the Light Signaling pathway) found in Scaffold 00026 (query sequence starts at base 445582) |
| − | AT5G57360 (ADAGIO 1, ADO1, FKF1-LIKE PROTEIN 2, FKL2, LKP1, LOV KELCH PROTEIN 1, ZEITLUPE, ZTL of the Light Signaling pathway) found in Scaffold 00026 (query sequence starts at base 445597) | + | <br/>AT5G57360 (ADAGIO 1, ADO1, FKF1-LIKE PROTEIN 2, FKL2, LKP1, LOV KELCH PROTEIN 1, ZEITLUPE, ZTL of the Light Signaling pathway) found in Scaffold 00026 (query sequence starts at base 445597) |
1) | 1) | ||
For Primer CAGAGTAAATGGTGTGGACCAA | For Primer CAGAGTAAATGGTGTGGACCAA | ||
| − | Rev Primer AAACCGGAACATATCCTCTTCA | + | - Rev Primer AAACCGGAACATATCCTCTTCA |
| − | Repeats (ga) x10 PCR product = 200 bp start at base 441957 | + | - Repeats (ga) x10 - PCR product = 200 bp - start at base 441957 |
2) | 2) | ||
For Primer GTAGATCAGGGAGAGGAGGGAT | For Primer GTAGATCAGGGAGAGGAGGGAT | ||
| − | Rev Primer GGTTTATGTGGACCGGAAATAA | + | - Rev Primer GGTTTATGTGGACCGGAAATAA |
| − | Repeats (ag) x11 PCR product = 250 bp start at base 429600 | + | - Repeats (ag) x11 - PCR product = 250 bp - start at base 429600 |
3) | 3) | ||
For Primer TCGCTAAATTGTCTGGGAAAGT | For Primer TCGCTAAATTGTCTGGGAAAGT | ||
| − | Rev Primer CCTACTTCGGGTAGGTACCTTTA | + | - Rev Primer CCTACTTCGGGTAGGTACCTTTA |
| − | Repeats (tc) x11 PCR product = 235 bp start at base 417206 | + | - Repeats (tc) x11 - PCR product = 235 bp - start at base 417206 |
| − | AT4G00650 (FLA, FLOWERING LOCUS A, FRI, FRIGIDA of the Vernalization pathway) found in Scaffold 00039 (query sequence starts at base 216632) | + | <BR/>AT4G00650 (FLA, FLOWERING LOCUS A, FRI, FRIGIDA of the Vernalization pathway) found in Scaffold 00039 (query sequence starts at base 216632) |
1) | 1) | ||
For Primer GGCTCCTTATTTCCCACTCTTT | For Primer GGCTCCTTATTTCCCACTCTTT | ||
| − | Rev Primer CAGCATTTCTCATAAGGGAAGG | + | - Rev Primer CAGCATTTCTCATAAGGGAAGG |
| − | Repeats (ag) x13 PCR product = 229 bp start at base 202952 | + | - Repeats (ag) x13 - PCR product = 229 bp - start at base 202952 |
2) | 2) | ||
For Primer GGGATTTTGAAGAGTGAAGACG | For Primer GGGATTTTGAAGAGTGAAGACG | ||
| − | Rev Primer TCTTCCTCCTCCTATTCCTTCC | + | - Rev Primer TCTTCCTCCTCCTATTCCTTCC |
| − | Repeats (tc) x10 PCR product = 297 bp start at base 235833 | + | - Repeats (tc) x10 - PCR product = 297 bp - start at base 235833 |
3) | 3) | ||
For Primer CCGTCCAGACAAACTTCTCTTC | For Primer CCGTCCAGACAAACTTCTCTTC | ||
| − | Rev Primer GGATTTTAGTATGAGTTCGGCG | + | - Rev Primer GGATTTTAGTATGAGTTCGGCG |
| − | Repeats (ctt) x11 PCR product = 299 bp start at base 257937 | + | - Repeats (ctt) x11 - PCR product = 299 bp - start at base 257937 |
| − | AT1G53160 (FLORAL TRANSITION AT THE MERISTEM6, FTM6, SPL4, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4 of the Age pathway) found in Scaffold 00062 (query sequence starts at base 412489) | + | <br/>AT1G53160 (FLORAL TRANSITION AT THE MERISTEM6, FTM6, SPL4, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4 of the Age pathway) found in Scaffold 00062 (query sequence starts at base 412489) |
| − | AT2G33810 (SPL3, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3 of the Age pathway) found in Scaffold 00062 (query sequence starts at base 412489) – CATHERINE D | + | <BR/>AT2G33810 (SPL3, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3 of the Age pathway) found in Scaffold 00062 (query sequence starts at base 412489) – CATHERINE D |
1) | 1) | ||
For Primer CCAAACTCCAAGAATGAACTCC | For Primer CCAAACTCCAAGAATGAACTCC | ||
| − | Rev Primer GATCTACGCATTGGAAACATCA | + | - Rev Primer GATCTACGCATTGGAAACATCA |
| − | Repeats (ga) x16 PCR product = 288 bp start at base 402970 | + | - Repeats (ga) x16 - PCR product = 288 bp - start at base 402970 |
2) | 2) | ||
For Primer TTTTCTGCTGAAGTGAAGTGGA | For Primer TTTTCTGCTGAAGTGAAGTGGA | ||
| − | Rev Primer TCTTTGTCTGGACATTGTTTGG | + | - Rev Primer TCTTTGTCTGGACATTGTTTGG |
| − | Repeats (ga) x10 PCR product = 180 bp start at base 392786 | + | - Repeats (ga) x10 - PCR product = 180 bp - start at base 392786 |
3) | 3) | ||
For Primer AGCGGAAATTATAGGAGGGAAG | For Primer AGCGGAAATTATAGGAGGGAAG | ||
| − | Rev Primer GGAGAGAGGAGAGAGAGACGAG | + | - Rev Primer GGAGAGAGGAGAGAGAGACGAG |
| − | Repeats (tc) x28 PCR product = 205 bp start at base 423921 | + | - Repeats (tc) x28 - PCR product = 205 bp - start at base 423921 |
| − | AT3G47500 (CDF3, CYCLING DOF FACTOR 3 of the Light Signaling pathway) found in Scaffold 00079 (query sequence starts at base 68175) | + | <BR/>AT3G47500 (CDF3, CYCLING DOF FACTOR 3 of the Light Signaling pathway) found in Scaffold 00079 (query sequence starts at base 68175) |
| − | AT1G26790 (of the Light Signaling pathway) found in Scaffold 00079 (query sequence starts at base 69048) – MIKE N | + | <br/>AT1G26790 (of the Light Signaling pathway) found in Scaffold 00079 (query sequence starts at base 69048) – MIKE N |
1) | 1) | ||
For Primer GTTTGACATATCGAGCTTGCAC | For Primer GTTTGACATATCGAGCTTGCAC | ||
| − | Rev Primer TTGGTTGTAGAGGAGTGGGATT | + | - Rev Primer TTGGTTGTAGAGGAGTGGGATT |
| − | Repeats (aat) x6 PCR product = 292 bp start at base 69852 | + | - Repeats (aat) x6 - PCR product = 292 bp - start at base 69852 |
2) | 2) | ||
For Primer CTCGATCCAATCCATAATCCAT | For Primer CTCGATCCAATCCATAATCCAT | ||
| − | Rev Primer GATCAAAAGCGCAAGTAGGAGT | + | - Rev Primer GATCAAAAGCGCAAGTAGGAGT |
| − | Repeats (ag) x8 PCR product = 270 bp start at base 71505 | + | - Repeats (ag) x8 - PCR product = 270 bp - start at base 71505 |
3) | 3) | ||
For Primer TTTGGACTAAAGCGCTACCATT | For Primer TTTGGACTAAAGCGCTACCATT | ||
| − | Rev Primer TACCACCACCCTTTATTTGGAG | + | - Rev Primer TACCACCACCCTTTATTTGGAG |
| − | Repeats (tcc) x9 PCR product = 298 bp start at base 52487 | + | - Repeats (tcc) x9 - PCR product = 298 bp - start at base 52487 |
| − | AT1G22770 (FB, GI, GIGANTEA of the Light Signaling pathway) found in Scaffold 00100 (query sequence starts at base 198329) – MIKE N | + | <br/>AT1G22770 (FB, GI, GIGANTEA of the Light Signaling pathway) found in Scaffold 00100 (query sequence starts at base 198329) – MIKE N |
1) | 1) | ||
For Primer TTTTTGTTGACCCCAAGACTTC | For Primer TTTTTGTTGACCCCAAGACTTC | ||
| − | Rev Primer AGCAACTTCCTCATCACAGACA | + | - Rev Primer AGCAACTTCCTCATCACAGACA |
| − | Repeats (ct) x11 PCR product = 257 bp start at base 196803 | + | - Repeats (ct) x11 - PCR product = 257 bp - start at base 196803 |
2) | 2) | ||
For Primer TTTCGCTCAGTTATCTCTCTCTGA | For Primer TTTCGCTCAGTTATCTCTCTCTGA | ||
| − | Rev Primer CCATCTTTAACTGCACAAACCA | + | - Rev Primer CCATCTTTAACTGCACAAACCA |
| − | Repeats (ta) x12 PCR product = 225 bp start at base 207941 | + | - Repeats (ta) x12 - PCR product = 225 bp - start at base 207941 |
3) | 3) | ||
For Primer TTTCGCTCAGTTATCTCTCTCTGA | For Primer TTTCGCTCAGTTATCTCTCTCTGA | ||
| − | Rev Primer CCATCTTTAACTGCACAAACCA | + | - Rev Primer CCATCTTTAACTGCACAAACCA |
| − | Repeats (ga) x11 PCR product = 225 bp start at base 207965 | + | - Repeats (ga) x11 - PCR product = 225 bp - start at base 207965 |
| − | AT3G05120 (ATGID1A, GA INSENSITIVE DWARF1A, GID1A of the Gibberellin pathway) found in Scaffold 00101 (query sequence starts at base 398762) | + | <BR/>AT3G05120 (ATGID1A, GA INSENSITIVE DWARF1A, GID1A of the Gibberellin pathway) found in Scaffold 00101 (query sequence starts at base 398762) |
1) | 1) | ||
For Primer CATCAATCAACGTAACCACCAT | For Primer CATCAATCAACGTAACCACCAT | ||
| − | Rev Primer ATCTGCTGTGAAGTGGAAAGGT | + | - Rev Primer ATCTGCTGTGAAGTGGAAAGGT |
| − | Repeats (gaa) x15 PCR product = 293 bp start at base 400426 | + | - Repeats (gaa) x15 - PCR product = 293 bp - start at base 400426 |
2) | 2) | ||
For Primer CTGCTGTGCATATTACCGTTGT | For Primer CTGCTGTGCATATTACCGTTGT | ||
| − | Rev Primer TAATGGTGGAGAATGTGTAGCG | + | - Rev Primer TAATGGTGGAGAATGTGTAGCG |
| − | Repeats (ct) x11 PCR product = 219 bp start at base 389934 | + | - Repeats (ct) x11 - PCR product = 219 bp - start at base 389934 |
3) | 3) | ||
For Primer ATGGGTAGTTGCTCCTAATTGC | For Primer ATGGGTAGTTGCTCCTAATTGC | ||
| − | Rev Primer AACCTCACAACCGAAGAAACAT | + | - Rev Primer AACCTCACAACCGAAGAAACAT |
| − | Repeats (ct) x10 PCR product = 279 bp start at base 420279 | + | - Repeats (ct) x10 - PCR product = 279 bp - start at base 420279 |
| − | AT2G33835 (FES1, FRIGIDA-ESSENTIAL 1 of the Vernalization pathway) found in Scaffold 00102 (query sequence starts at base 88264) | + | <BR/>AT2G33835 (FES1, FRIGIDA-ESSENTIAL 1 of the Vernalization pathway) found in Scaffold 00102 (query sequence starts at base 88264) |
1) | 1) | ||
For Primer CACCCCTCCATCCATTAGTAAA | For Primer CACCCCTCCATCCATTAGTAAA | ||
| − | Rev Primer ATGGAAAGGACTGGTGGTAAGA | + | - Rev Primer ATGGAAAGGACTGGTGGTAAGA |
| − | Repeats (tc) x10 PCR product = 163 bp start at base 113504 | + | - Repeats (tc) x10 - PCR product = 163 bp - start at base 113504 |
2) | 2) | ||
For Primer TCTACAGCATCTCTCCCACTCA | For Primer TCTACAGCATCTCTCCCACTCA | ||
| − | Rev Primer CCTCCAAATGATGAACACAAGA | + | - Rev Primer CCTCCAAATGATGAACACAAGA |
| − | Repeats (tc) x13 PCR product = 250 bp start at base 52555 | + | - Repeats (tc) x13 - PCR product = 250 bp - start at base 52555 |
3) | 3) | ||
For Primer TCTTTGATCCTTCTGGTTTGGT | For Primer TCTTTGATCCTTCTGGTTTGGT | ||
| − | Rev Primer CAGCTCTCACCTACCTCACTCA | + | - Rev Primer CAGCTCTCACCTACCTCACTCA |
| − | Repeats (ga) x20 PCR product = 286 bp start at base 132341 | + | - Repeats (ga) x20 - PCR product = 286 bp - start at base 132341 |
| − | AT4G16280 (FCA of the Ambient Temperature and Autonomous pathways) found in Scaffold 00104 (query sequence starts at base 120318) | + | <BR/>AT4G16280 (FCA of the Ambient Temperature and Autonomous pathways) found in Scaffold 00104 (query sequence starts at base 120318) |
1) | 1) | ||
For Primer CATTCGGATTTCTTATCCATCC | For Primer CATTCGGATTTCTTATCCATCC | ||
| − | Rev Primer CTCCCTTTCACTGCTCTCTGAT | + | - Rev Primer CTCCCTTTCACTGCTCTCTGAT |
| − | Repeats (ga) x8 PCR product = 219 bp start at base 137168 | + | - Repeats (ga) x8 - PCR product = 219 bp - start at base 137168 |
2) | 2) | ||
For Primer AACTCAAGCCCATTTACTCCAA | For Primer AACTCAAGCCCATTTACTCCAA | ||
| − | Rev Primer TGTTTGTGACTATGAACCTGGG | + | - Rev Primer TGTTTGTGACTATGAACCTGGG |
| − | Repeats (tc) x10 PCR product = 209 bp start at base 150456 | + | - Repeats (tc) x10 - PCR product = 209 bp - start at base 150456 |
3) | 3) | ||
For Primer ATAAAACCAACACTGACCACCC | For Primer ATAAAACCAACACTGACCACCC | ||
| − | Rev Primer TAACCAAAACTCGTCGGAATCT | + | - Rev Primer TAACCAAAACTCGTCGGAATCT |
| − | Repeats (ct) x8 PCR product = 257 bp start at base 106905 | + | - Repeats (ct) x8 - PCR product = 257 bp - start at base 106905 |
| − | AT3G15270 (SPL5, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5 of the Age pathway) found in Scaffold 00105 (query sequence starts at base 147284) | + | <BR/>AT3G15270 (SPL5, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5 of the Age pathway) found in Scaffold 00105 (query sequence starts at base 147284) |
1) | 1) | ||
For Primer TCCTCTTGCAAGGAATTGGTAT | For Primer TCCTCTTGCAAGGAATTGGTAT | ||
| − | Rev Primer CCTAGGGGGAGAATAGTGCTTT | + | - Rev Primer CCTAGGGGGAGAATAGTGCTTT |
| − | Repeats (ga) x8 PCR product = 118 bp start at base 142051 | + | - Repeats (ga) x8 - PCR product = 118 bp - start at base 142051 |
2) | 2) | ||
For Primer GAGCTTTCGTACCTCCGTAAAA | For Primer GAGCTTTCGTACCTCCGTAAAA | ||
| − | Rev Primer TGACGTCGTAGAGTTGGTAGGA | + | - Rev Primer TGACGTCGTAGAGTTGGTAGGA |
| − | Repeats (tc) x13 PCR product = 299 bp start at base 139430 | + | - Repeats (tc) x13 - PCR product = 299 bp - start at base 139430 |
3) | 3) | ||
For Primer TACTGTTATTCAGGGTGGCCTT | For Primer TACTGTTATTCAGGGTGGCCTT | ||
| − | Rev Primer AGCCTAGATCGTTTTGCTTCAA | + | - Rev Primer AGCCTAGATCGTTTTGCTTCAA |
| − | Repeats (ct) x12 PCR product = 268 bp start at base 123867 | + | - Repeats (ct) x12 - PCR product = 268 bp - start at base 123867 |
| − | AT1G68050 ("FLAVIN-BINDING, KELCH REPEAT, F BOX 1", ADO3, FKF1 of the Light Signaling pathway) found in Scaffold 00110 (query sequence starts at base 120279) | + | <br/>AT1G68050 ("FLAVIN-BINDING, KELCH REPEAT, F BOX 1", ADO3, FKF1 of the Light Signaling pathway) found in Scaffold 00110 (query sequence starts at base 120279) |
1) | 1) | ||
For Primer ATTCAGATGGCGGATAAAAGAG | For Primer ATTCAGATGGCGGATAAAAGAG | ||
| − | Rev Primer CCGCGTTTTCCAGTCTATATTC | + | - Rev Primer CCGCGTTTTCCAGTCTATATTC |
| − | Repeats (ag) x8 PCR product = 242 bp start at base 126867 | + | - Repeats (ag) x8 - PCR product = 242 bp - start at base 126867 |
2) | 2) | ||
For Primer GAGGTGAAGTGTAGATGAGGGG | For Primer GAGGTGAAGTGTAGATGAGGGG | ||
| − | Rev Primer GAGAGAGAGCGACAAGACGAAT | + | - Rev Primer GAGAGAGAGCGACAAGACGAAT |
| − | Repeats (ct) x14 PCR product = 274 bp start at base 136199 | + | - Repeats (ct) x14 - PCR product = 274 bp - start at base 136199 |
3) | 3) | ||
For Primer TTTGCGCTCTCTCTCTCTCTCT | For Primer TTTGCGCTCTCTCTCTCTCTCT | ||
| − | Rev Primer GAAACTCGAAATCTTGAAACCG | + | - Rev Primer GAAACTCGAAATCTTGAAACCG |
| − | Repeats (ct) x15 PCR product = 260 bp start at base 136377 | + | - Repeats (ct) x15 - PCR product = 260 bp - start at base 136377 |
| − | AT5G02810 (APRR7, PRR7, PSEUDO-RESPONSE REGULATOR 7 of the Light Signaling pathway) found in Scaffold 00125 (query sequence starts at base 276518) | + | <br/>AT5G02810 (APRR7, PRR7, PSEUDO-RESPONSE REGULATOR 7 of the Light Signaling pathway) found in Scaffold 00125 (query sequence starts at base 276518) |
1) | 1) | ||
For Primer TAAGCAAGCTCGAACCCTAATC | For Primer TAAGCAAGCTCGAACCCTAATC | ||
| − | Rev Primer CGATGCTGTTAGTTCATTCCAA | + | - Rev Primer CGATGCTGTTAGTTCATTCCAA |
| − | Repeats (tc) x11 PCR product = 263 bp start at base 278986 | + | - Repeats (tc) x11 - PCR product = 263 bp - start at base 278986 |
2) | 2) | ||
For Primer GTCATTAGAGCAACAGCAGCAG | For Primer GTCATTAGAGCAACAGCAGCAG | ||
| − | Rev Primer TCGTCGTCGTTATCATCATCTC | + | - Rev Primer TCGTCGTCGTTATCATCATCTC |
| − | Repeats (ct) x8 PCR product = 291 bp start at base 290380 | + | - Repeats (ct) x8 - PCR product = 291 bp - start at base 290380 |
3) | 3) | ||
For Primer CCTCAAAACTGGGGAAAATAGA | For Primer CCTCAAAACTGGGGAAAATAGA | ||
| − | Rev Primer GGGTATAAAAGGCAAGCAGATG | + | - Rev Primer GGGTATAAAAGGCAAGCAGATG |
| − | Repeats (ga) x10 PCR product = 138 bp start at base 226349 | + | - Repeats (ga) x10 - PCR product = 138 bp - start at base 226349 |
| − | AT1G27370 (SPL10, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 10 of the Age pathway) found in Scaffold 00127 (query sequence starts at base 165806) – CATHERINE D | + | <br/>AT1G27370 (SPL10, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 10 of the Age pathway) found in Scaffold 00127 (query sequence starts at base 165806) – CATHERINE D |
1) | 1) | ||
For Primer CCAGAAATAACCTCGAAACAGC | For Primer CCAGAAATAACCTCGAAACAGC | ||
| − | Rev Primer CCATGATTGATCAAAACAGCTC | + | - Rev Primer CCATGATTGATCAAAACAGCTC |
| − | Repeats (ga) x12 PCR product = 281 bp start at base 169541 | + | - Repeats (ga) x12 - PCR product = 281 bp - start at base 169541 |
2) | 2) | ||
For Primer AGTTAAGGGAGGCCTAGGGAC | For Primer AGTTAAGGGAGGCCTAGGGAC | ||
| − | Rev Primer GGTCGCCCTTAGATAAGGATTC | + | - Rev Primer GGTCGCCCTTAGATAAGGATTC |
| − | Repeats (at) x11 PCR product = 298 bp start at base 176760 | + | - Repeats (at) x11 - PCR product = 298 bp - start at base 176760 |
3) | 3) | ||
For Primer CAATTTTGTTCCCACCTCTCTC | For Primer CAATTTTGTTCCCACCTCTCTC | ||
| − | Rev Primer AATGAATGTAGCAAATCCCCAC | + | - Rev Primer AATGAATGTAGCAAATCCCCAC |
| − | Repeats (ac) x8 PCR product = 211 bp start at base 152171 | + | - Repeats (ac) x8 - PCR product = 211 bp - start at base 152171 |
| − | AT1G66350 (RGA-LIKE 1, RGL, RGL1 of the Gibberellin pathway) found in Scaffold 00134 (query sequence starts at base 174707) | + | <br/>AT1G66350 (RGA-LIKE 1, RGL, RGL1 of the Gibberellin pathway) found in Scaffold 00134 (query sequence starts at base 174707) |
| − | AT3G03450 (RGA-LIKE 2, RGL2 of the Gibberellin pathway) found in Scaffold 00134 (query sequence starts at base 174722) | + | <BR/>AT3G03450 (RGA-LIKE 2, RGL2 of the Gibberellin pathway) found in Scaffold 00134 (query sequence starts at base 174722) |
1) | 1) | ||
For Primer TGACAAGACGTGCGATATAAGG | For Primer TGACAAGACGTGCGATATAAGG | ||
| − | Rev Primer TCCTCGTCGAACATCTTTTTG | + | - Rev Primer TCCTCGTCGAACATCTTTTTG |
| − | Repeats (ttc) x5 PCR product = 250 bp start at base 174643 | + | - Repeats (ttc) x5 - PCR product = 250 bp - start at base 174643 |
2) | 2) | ||
For Primer TTCACACCAAATGGACTCTGAC | For Primer TTCACACCAAATGGACTCTGAC | ||
| − | Rev Primer GAGAATAATTTTGTCCCACCCA | + | - Rev Primer GAGAATAATTTTGTCCCACCCA |
| − | Repeats (tc) x9 PCR product = 237 bp start at base 135335 | + | - Repeats (tc) x9 - PCR product = 237 bp - start at base 135335 |
3) | 3) | ||
For Primer AGATCACAATGGGCTTCAAACT | For Primer AGATCACAATGGGCTTCAAACT | ||
| − | Rev Primer AGGAGGACGTTGGAGACTGTAA | + | - Rev Primer AGGAGGACGTTGGAGACTGTAA |
| − | Repeats (ca) x13 PCR product = 204 bp start at base 116959 | + | - Repeats (ca) x13 - PCR product = 204 bp - start at base 116959 |
| − | AT1G01060 (LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1 of the Light Signaling pathway) found in Scaffold 00140 (query sequence starts at base 234299) | + | <br/>AT1G01060 (LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1 of the Light Signaling pathway) found in Scaffold 00140 (query sequence starts at base 234299) |
| − | AT2G46830 (ATCCA1, CCA1, CIRCADIAN CLOCK ASSOCIATED 1 of the Light Signaling pathway) found in Scaffold 00140 (query sequence starts at base 234299) | + | <BR/>AT2G46830 (ATCCA1, CCA1, CIRCADIAN CLOCK ASSOCIATED 1 of the Light Signaling pathway) found in Scaffold 00140 (query sequence starts at base 234299) |
1) | 1) | ||
For Primer GAAATTACCCTCTCTGACGTGG | For Primer GAAATTACCCTCTCTGACGTGG | ||
| − | Rev Primer AGAAGATCCAGCTTTGAGTTGC | + | - Rev Primer AGAAGATCCAGCTTTGAGTTGC |
| − | Repeats (tc) x10 PCR product = 153 bp start at base 232252 | + | - Repeats (tc) x10 - PCR product = 153 bp - start at base 232252 |
2) | 2) | ||
For Primer TTTGTTCCACTTCCCAAGTTCT | For Primer TTTGTTCCACTTCCCAAGTTCT | ||
| − | Rev Primer GGGGACCATCTTCTTTGCTATT | + | - Rev Primer GGGGACCATCTTCTTTGCTATT |
| − | Repeats (ct) x8 PCR product = 230 bp start at base 262342 | + | - Repeats (ct) x8 - PCR product = 230 bp - start at base 262342 |
3) | 3) | ||
For Primer CTAGGCAAAGCCGCTAATTACA | For Primer CTAGGCAAAGCCGCTAATTACA | ||
| − | Rev Primer CCCATGAGATTTCCTTTTGA | + | - Rev Primer CCCATGAGATTTCCTTTTGA |
| − | Repeats (gaa) x10 PCR product = 203 bp start at base 264721 | + | - Repeats (gaa) x10 - PCR product = 203 bp - start at base 264721 |
| − | AT3G12810 (CHR13, PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, PIE1, SRCAP of the Vernalization pathway) found in Scaffold 00147 (query sequence starts at base 30164) | + | <BR/>AT3G12810 (CHR13, PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, PIE1, SRCAP of the Vernalization pathway) found in Scaffold 00147 (query sequence starts at base 30164) |
1) | 1) | ||
For Primer GGTTGGATGCTCTGTCACAATA | For Primer GGTTGGATGCTCTGTCACAATA | ||
| − | Rev Primer CCTGCTGTTGTCATTCTCTTTG | + | - Rev Primer CCTGCTGTTGTCATTCTCTTTG |
| − | Repeats (gt) x14 PCR product = 195 bp start at base 36897 | + | - Repeats (gt) x14 - PCR product = 195 bp - start at base 36897 |
2) | 2) | ||
For Primer GTGTGTGTGTGTGTGTGTGTGA | For Primer GTGTGTGTGTGTGTGTGTGTGA | ||
| − | Rev Primer AATCCTTCGAAAGTATGGCTCA | + | - Rev Primer AATCCTTCGAAAGTATGGCTCA |
| − | Repeats (ag) x11 PCR product = 179 bp start at base 26112 | + | - Repeats (ag) x11 - PCR product = 179 bp - start at base 26112 |
3) | 3) | ||
For Primer AGCCAACTACCGTACAAAGACC | For Primer AGCCAACTACCGTACAAAGACC | ||
| − | Rev Primer AATCCTTCGAAAGTATGGCTCA | + | - Rev Primer AATCCTTCGAAAGTATGGCTCA |
| − | Repeats (tg) x15 PCR product = 239 bp start at base 26082 | + | - Repeats (tg) x15 - PCR product = 239 bp - start at base 26082 |
| − | AT5G13480 (FY of the Autonomous pathway) found in Scaffold 00166 (query sequence starts at base 74796) | + | <br/>AT5G13480 (FY of the Autonomous pathway) found in Scaffold 00166 (query sequence starts at base 74796) |
1) | 1) | ||
For Primer CAGCTACAGCAACACCTTCAAT | For Primer CAGCTACAGCAACACCTTCAAT | ||
| − | Rev Primer AAGGGGGTAAAAGCTGTACCAT | + | - Rev Primer AAGGGGGTAAAAGCTGTACCAT |
| − | Repeats (caa) x7 PCR product = 245 bp start at base 69326 | + | - Repeats (caa) x7 - PCR product = 245 bp - start at base 69326 |
2) | 2) | ||
For Primer AAACCAATCTTCTCCTTCTCCC | For Primer AAACCAATCTTCTCCTTCTCCC | ||
| − | Rev Primer GGTGGTTGTTGTTGTTGTTGTT | + | - Rev Primer GGTGGTTGTTGTTGTTGTTGTT |
| − | Repeats (gca) x6 PCR product = 282 bp start at base 69223 | + | - Repeats (gca) x6 - PCR product = 282 bp - start at base 69223 |
3) | 3) | ||
For Primer GACATGGGAATCTTTGCCTTAG | For Primer GACATGGGAATCTTTGCCTTAG | ||
| − | Rev Primer CACTTCATCAAATAACCAGCCA | + | - Rev Primer CACTTCATCAAATAACCAGCCA |
| − | Repeats (ag) x19 PCR product = 266 bp start at base 119541 | + | - Repeats (ag) x19 - PCR product = 266 bp - start at base 119541 |
| − | AT5G03840 (TERMINAL FLOWER 1, TFL1 of the Ambient Temperature pathway) found in Scaffold 00181 (query sequence starts at base 12825) | + | <br/>AT5G03840 (TERMINAL FLOWER 1, TFL1 of the Ambient Temperature pathway) found in Scaffold 00181 (query sequence starts at base 12825) |
1) | 1) | ||
For Primer TCTAGTAGCTGGGGTGCTTCTC | For Primer TCTAGTAGCTGGGGTGCTTCTC | ||
| − | Rev Primer AGCAGAAGGAAATAGCTCATGC | + | - Rev Primer AGCAGAAGGAAATAGCTCATGC |
| − | Repeats (tc) x11 PCR product = 260 bp start at base 12778 | + | - Repeats (tc) x11 - PCR product = 260 bp - start at base 12778 |
2) | 2) | ||
For Primer AGAATCATGCCAACAGAGGTTT | For Primer AGAATCATGCCAACAGAGGTTT | ||
| − | Rev Primer TAGACGGATGGCCTATCAAGTT | + | - Rev Primer TAGACGGATGGCCTATCAAGTT |
| − | Repeats (ct) x9 PCR product = 111 bp start at base 13947 | + | - Repeats (ct) x9 - PCR product = 111 bp - start at base 13947 |
3) | 3) | ||
For Primer TACCAGTTCACGATCTCTCCCT | For Primer TACCAGTTCACGATCTCTCCCT | ||
| − | Rev Primer ACATCAACCCAACAACCTATCC | + | - Rev Primer ACATCAACCCAACAACCTATCC |
| − | Repeats (tc) x8 PCR product = 238 bp start at base 27256 | + | - Repeats (tc) x8 - PCR product = 238 bp - start at base 27256 |
| − | AT3G10390 (FLD, FLOWERING LOCUS D of the Ambient Temperature and Autonomous pathways) found in Scaffold 00232 (query sequence starts at base 139565) | + | <BR/>AT3G10390 (FLD, FLOWERING LOCUS D of the Ambient Temperature and Autonomous pathways) found in Scaffold 00232 (query sequence starts at base 139565) |
1) | 1) | ||
For Primer CATAAACGGTTTTAGCAAGGCT | For Primer CATAAACGGTTTTAGCAAGGCT | ||
| − | Rev Primer TCTCTGGGTGACCTTACCATCT | + | - Rev Primer TCTCTGGGTGACCTTACCATCT |
| − | Repeats (ct) x8 PCR product = 207 bp start at base 132421 | + | - Repeats (ct) x8 - PCR product = 207 bp - start at base 132421 |
2) | 2) | ||
For Primer CAGTCCATGGGTATGCTTGATA | For Primer CAGTCCATGGGTATGCTTGATA | ||
| − | Rev Primer TTGCAATGATAAGTACCGCAAG | + | - Rev Primer TTGCAATGATAAGTACCGCAAG |
| − | Repeats (at) x11 PCR product = 273 bp start at base 113550 | + | - Repeats (at) x11 - PCR product = 273 bp - start at base 113550 |
3) | 3) | ||
For Primer CTTCTTGCTTTGCAGGCTTTAT | For Primer CTTCTTGCTTTGCAGGCTTTAT | ||
| − | Rev Primer TTAGAATGGGGTGTGTGTGTGT | + | - Rev Primer TTAGAATGGGGTGTGTGTGTGT |
| − | Repeats (tc) x12 PCR product = 299 bp start at base 153951 | + | - Repeats (tc) x12 - PCR product = 299 bp - start at base 153951 |
| − | AT3G33520 (ACTIN-RELATED PROTEIN 6, ARP6, ATARP6, EARLY IN SHORT DAYS 1, ESD1, SUF3, SUPPRESSOR OF FRI 3 of the Ambient Temperature and Vernalization pathways) found in Scaffold 00246 (query sequence starts at base 268521) | + | <BR/>AT3G33520 (ACTIN-RELATED PROTEIN 6, ARP6, ATARP6, EARLY IN SHORT DAYS 1, ESD1, SUF3, SUPPRESSOR OF FRI 3 of the Ambient Temperature and Vernalization pathways) found in Scaffold 00246 (query sequence starts at base 268521) |
1) | 1) | ||
For Primer CGAGGTCTGGGTTTATGAGGTA | For Primer CGAGGTCTGGGTTTATGAGGTA | ||
| − | Rev Primer GGGAAACAGAAGTCCAGAGAGA | + | - Rev Primer GGGAAACAGAAGTCCAGAGAGA |
| − | Repeats (tc) x10 PCR product = 265 bp start at base 268979 | + | - Repeats (tc) x10 - PCR product = 265 bp - start at base 268979 |
2) | 2) | ||
For Primer TTCAACTGAGATGCGTTTAGGA | For Primer TTCAACTGAGATGCGTTTAGGA | ||
| − | Rev Primer AAGCAGGTAAATGAGCCCAATA | + | - Rev Primer AAGCAGGTAAATGAGCCCAATA |
| − | Repeats (tg) x11 PCR product = 258 bp start at base 255772 | + | - Repeats (tg) x11 - PCR product = 258 bp - start at base 255772 |
3) | 3) | ||
For Primer CACCTTAACAAATGTGGAGCAA | For Primer CACCTTAACAAATGTGGAGCAA | ||
| − | Rev Primer CCCTCATTGATGTGTGTGTTCT | + | - Rev Primer CCCTCATTGATGTGTGTGTTCT |
| − | Repeats (tc) x14 PCR product = 272 bp start at base 239356 | + | - Repeats (tc) x14 - PCR product = 272 bp - start at base 239356 |
| − | AT4G11880 (AGAMOUS-LIKE 14, AGL14 of the Vernalization pathway) found in Scaffold 00249 (query sequence starts at base 131012) | + | <BR/>AT4G11880 (AGAMOUS-LIKE 14, AGL14 of the Vernalization pathway) found in Scaffold 00249 (query sequence starts at base 131012) |
| − | AT4G22950 (AGAMOUS-LIKE 19, AGL19, GL19 of the Vernalization pathway) found in Scaffold 00249 (query sequence starts at base 131012) | + | <BR/>AT4G22950 (AGAMOUS-LIKE 19, AGL19, GL19 of the Vernalization pathway) found in Scaffold 00249 (query sequence starts at base 131012) |
1) | 1) | ||
For Primer ACACTGTTCAGTTTCAAGGGGT | For Primer ACACTGTTCAGTTTCAAGGGGT | ||
| − | Rev Primer ACGAAACACATCAAGCTAGCAA | + | - Rev Primer ACGAAACACATCAAGCTAGCAA |
| − | Repeats (at) x9 PCR product = 285 bp start at base 132095 | + | - Repeats (at) x9 - PCR product = 285 bp - start at base 132095 |
2) | 2) | ||
For Primer TCAAGAACCTGTGAATCTGGAA | For Primer TCAAGAACCTGTGAATCTGGAA | ||
| − | Rev Primer TAGGTTTTTCGGGTAACCTTGA | + | - Rev Primer TAGGTTTTTCGGGTAACCTTGA |
| − | Repeats (ag) x14 PCR product = 255 bp start at base 102031 | + | - Repeats (ag) x14 - PCR product = 255 bp - start at base 102031 |
3) | 3) | ||
For Primer ATTGAACAACAGTTGGAGCAGA | For Primer ATTGAACAACAGTTGGAGCAGA | ||
| − | Rev Primer TCAGTGTCGTGTCTATGTCGTG | + | - Rev Primer TCAGTGTCGTGTCTATGTCGTG |
| − | Repeats (ga) x15 PCR product = 258 bp start at base 144337 | + | - Repeats (ga) x15 - PCR product = 258 bp - start at base 144337 |
| − | AT5G11530 (EMBRYONIC FLOWER 1, EMF1 of the Polycomb pathway) found in Scaffold 00253 (query sequence starts at base 11069) | + | <br/>AT5G11530 (EMBRYONIC FLOWER 1, EMF1 of the Polycomb pathway) found in Scaffold 00253 (query sequence starts at base 11069) |
1) | 1) | ||
For Primer CTCTAACACATTCTGGTTGCCA | For Primer CTCTAACACATTCTGGTTGCCA | ||
| − | Rev Primer TGTATGAAGGTATCCATGCTGC | + | - Rev Primer TGTATGAAGGTATCCATGCTGC |
| − | Repeats (aga) x6 PCR product = 281 bp start at base 15630 | + | - Repeats (aga) x6 - PCR product = 281 bp - start at base 15630 |
2) | 2) | ||
For Primer AAGCTTCACTTGGATTCTCCAC | For Primer AAGCTTCACTTGGATTCTCCAC | ||
| − | Rev Primer GCCTTTTATTACAACAAAGCCG | + | - Rev Primer GCCTTTTATTACAACAAAGCCG |
| − | Repeats (ag) x9 PCR product = 271 bp start at base 18170 | + | - Repeats (ag) x9 - PCR product = 271 bp - start at base 18170 |
3) | 3) | ||
For Primer TTTTGATGATGTCAGCAGGTCT | For Primer TTTTGATGATGTCAGCAGGTCT | ||
| − | Rev Primer CCACTAGGCCTGATTTTCTCTG | + | - Rev Primer CCACTAGGCCTGATTTTCTCTG |
| − | Repeats (ga) x10 PCR product = 243 bp start at base 34859 | + | - Repeats (ga) x10 - PCR product = 243 bp - start at base 34859 |
| − | AT2G40080 (EARLY FLOWERING 4, ELF4 of the Light Signaling pathway) found in Scaffold 00254 (query sequence starts at base 228805) | + | <BR/>AT2G40080 (EARLY FLOWERING 4, ELF4 of the Light Signaling pathway) found in Scaffold 00254 (query sequence starts at base 228805) |
1) | 1) | ||
For Primer TGACCATCCCTTCTGAATTTCT | For Primer TGACCATCCCTTCTGAATTTCT | ||
| − | Rev Primer TTTCGACAATGCCAACAGATAC | + | - Rev Primer TTTCGACAATGCCAACAGATAC |
| − | Repeats (ct) x40 PCR product = 288 bp start at base 231757 | + | - Repeats (ct) x40 - PCR product = 288 bp - start at base 231757 |
2) | 2) | ||
For Primer TACACCTCTTCTCTCTCCTGCC | For Primer TACACCTCTTCTCTCTCCTGCC | ||
| − | Rev Primer GACTGTTACAACTCCGCTTCCT | + | - Rev Primer GACTGTTACAACTCCGCTTCCT |
| − | Repeats (ca) x12 PCR product = 216 bp start at base 233794 | + | - Repeats (ca) x12 - PCR product = 216 bp - start at base 233794 |
3) | 3) | ||
For Primer CCGTGTATCTATCTCCACTCCC | For Primer CCGTGTATCTATCTCCACTCCC | ||
| − | Rev Primer AGTTTCGAACAGTGCTTTCACA | + | - Rev Primer AGTTTCGAACAGTGCTTTCACA |
| − | Repeats (aga) x11 PCR product = 283 bp start at base 238558 | + | - Repeats (aga) x11 - PCR product = 283 bp - start at base 238558 |
| − | AT2G34140 (of the Light Signaling pathway) found in Scaffold 00270 (query sequence starts at base 215217) | + | <BR/>AT2G34140 (of the Light Signaling pathway) found in Scaffold 00270 (query sequence starts at base 215217) |
| − | AT1G29160 (of the Light Signaling pathway) found in Scaffold 00270 (query sequence starts at base 215229) | + | <br/>AT1G29160 (of the Light Signaling pathway) found in Scaffold 00270 (query sequence starts at base 215229) |
1) | 1) | ||
For Primer TGGGACCTGATCTTTTTCTTGT | For Primer TGGGACCTGATCTTTTTCTTGT | ||
| − | Rev Primer TGCCCGTTATTGTGTTTGTAAG | + | - Rev Primer TGCCCGTTATTGTGTTTGTAAG |
| − | Repeats (ga) x18 PCR product = 226 bp start at base 215694 | + | - Repeats (ga) x18 - PCR product = 226 bp - start at base 215694 |
2) | 2) | ||
For Primer CGGATCTTCTCTGTCTGCTTCT | For Primer CGGATCTTCTCTGTCTGCTTCT | ||
| − | Rev Primer CCCCCTCACCTACTCTTCTTCT | + | - Rev Primer CCCCCTCACCTACTCTTCTTCT |
| − | Repeats (ct) x8 PCR product = 252 bp start at base 235137 | + | - Repeats (ct) x8 - PCR product = 252 bp - start at base 235137 |
3) | 3) | ||
For Primer ATTTAACCCCCTCCAACATTCT | For Primer ATTTAACCCCCTCCAACATTCT | ||
| − | Rev Primer GAATTGGCTGGAAATGCATAGT | + | - Rev Primer GAATTGGCTGGAAATGCATAGT |
| − | Repeats (ac) x11 PCR product = 237 bp start at base 146669 | + | - Repeats (ac) x11 - PCR product = 237 bp - start at base 146669 |
| − | AT1G31814 (FRIGIDA LIKE 2, FRL2 of the Vernalization pathway) found in Scaffold 00289 (query sequence starts at base 150896) | + | <br/>AT1G31814 (FRIGIDA LIKE 2, FRL2 of the Vernalization pathway) found in Scaffold 00289 (query sequence starts at base 150896) |
1) | 1) | ||
For Primer TTAGCAATAATCCACACGATGC | For Primer TTAGCAATAATCCACACGATGC | ||
| − | Rev Primer TATGAAATCCCAAACAGGGAAC | + | - Rev Primer TATGAAATCCCAAACAGGGAAC |
| − | Repeats (at) x10 PCR product = 278 bp start at base 140291 | + | - Repeats (at) x10 - PCR product = 278 bp - start at base 140291 |
2) | 2) | ||
For Primer TACTATTGGGATAGTGGTGGGG | For Primer TACTATTGGGATAGTGGTGGGG | ||
| − | Rev Primer CTTCCTTCATTCTTAGCTTGTTCTG | + | - Rev Primer CTTCCTTCATTCTTAGCTTGTTCTG |
| − | Repeats (ct) x16 PCR product = 256 bp start at base 138109 | + | - Repeats (ct) x16 - PCR product = 256 bp - start at base 138109 |
3) | 3) | ||
For Primer TATGCATTTGCTAACGGATGTC | For Primer TATGCATTTGCTAACGGATGTC | ||
| − | Rev Primer GCCTTCTGCGAATAGAAAAGAA | + | - Rev Primer GCCTTCTGCGAATAGAAAAGAA |
| − | Repeats (gt) x10 PCR product = 131 bp start at base 162744 | + | - Repeats (gt) x10 - PCR product = 131 bp - start at base 162744 |
| − | AT4G08920 (ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, CRYPTOCHROME 1, ELONGATED HYPOCOTYL 4, HY4, OOP2, OUT OF PHASE 2 of the Light Signaling pathway) found in Scaffold 00331 (query sequence starts at base 124817) – MIKE N | + | <BR/>AT4G08920 (ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, CRYPTOCHROME 1, ELONGATED HYPOCOTYL 4, HY4, OOP2, OUT OF PHASE 2 of the Light Signaling pathway) found in Scaffold 00331 (query sequence starts at base 124817) – MIKE N |
1) | 1) | ||
For Primer GACATTCAATACGCACCTACCA | For Primer GACATTCAATACGCACCTACCA | ||
| − | Rev Primer AAGGTGCATCGCTTACTACCTC | + | - Rev Primer AAGGTGCATCGCTTACTACCTC |
| − | Repeats (tc) x9 PCR product = 197 bp start at base 114263 | + | - Repeats (tc) x9 - PCR product = 197 bp - start at base 114263 |
2) | 2) | ||
For Primer TTCTCGAACATTATTCCTCTGC | For Primer TTCTCGAACATTATTCCTCTGC | ||
| − | Rev Primer TAGAGAAACCGAGAGAGGATGG | + | - Rev Primer TAGAGAAACCGAGAGAGGATGG |
| − | Repeats (ga) x13 PCR product = 282 bp start at base 159723 | + | - Repeats (ga) x13 - PCR product = 282 bp - start at base 159723 |
3) | 3) | ||
For Primer CAGTCGCAAACAAACCTACTCC | For Primer CAGTCGCAAACAAACCTACTCC | ||
| − | Rev Primer TGCCCTAACTTCATTCTCCCTA | + | - Rev Primer TGCCCTAACTTCATTCTCCCTA |
| − | Repeats (tcc) x6 PCR product = 276 bp start at base 61835 | + | - Repeats (tcc) x6 - PCR product = 276 bp - start at base 61835 |
| − | AT2G06255 (ELF4-L3, ELF4-LIKE 3 of the Light Signaling pathway) found in Scaffold 00336 (query sequence starts at base 188137) | + | <BR/>AT2G06255 (ELF4-L3, ELF4-LIKE 3 of the Light Signaling pathway) found in Scaffold 00336 (query sequence starts at base 188137) |
1) | 1) | ||
For Primer AAGTTGGGGTATTCTGTTGTGG | For Primer AAGTTGGGGTATTCTGTTGTGG | ||
| − | Rev Primer ACTACAATCGTGTAGTGCGGTG | + | - Rev Primer ACTACAATCGTGTAGTGCGGTG |
| − | Repeats (ag) x13 PCR product = 185 bp start at base 167935 | + | - Repeats (ag) x13 - PCR product = 185 bp - start at base 167935 |
2) | 2) | ||
For Primer GAAAAACCAAACAAACCTCCAC | For Primer GAAAAACCAAACAAACCTCCAC | ||
| − | Rev Primer CCACAACAGAATACCCCAACTT | + | - Rev Primer CCACAACAGAATACCCCAACTT |
| − | Repeats (ga) x10 PCR product = 277 bp start at base 167792 | + | - Repeats (ga) x10 - PCR product = 277 bp - start at base 167792 |
3) | 3) | ||
For Primer AGGTGCAGGGTTCTTACTTGAG | For Primer AGGTGCAGGGTTCTTACTTGAG | ||
| − | Rev Primer ACAAGCCGAGGTACAAAGAAAA | + | - Rev Primer ACAAGCCGAGGTACAAAGAAAA |
| − | Repeats (ct) x10 PCR product = 106 bp start at base 201634 | + | - Repeats (ct) x10 - PCR product = 106 bp - start at base 201634 |
| − | AT1G30970 (SUF4, SUPPRESSOR OF FRIGIDA4 of the Vernalization pathway) found in Scaffold 00348 (query sequence starts at base 75279) | + | <br/>AT1G30970 (SUF4, SUPPRESSOR OF FRIGIDA4 of the Vernalization pathway) found in Scaffold 00348 (query sequence starts at base 75279) |
1) | 1) | ||
For Primer TTTACGGATATCATCACCCCTC | For Primer TTTACGGATATCATCACCCCTC | ||
| − | Rev Primer TGTTTTGCAAGTTCTCCTCTCA | + | - Rev Primer TGTTTTGCAAGTTCTCCTCTCA |
| − | Repeats (tg) x9 PCR product = 215 bp start at base 66541 | + | - Repeats (tg) x9 - PCR product = 215 bp - start at base 66541 |
2) | 2) | ||
For Primer GATGCAGACATGCTAGGGATAC | For Primer GATGCAGACATGCTAGGGATAC | ||
| − | Rev Primer CAATATGTTGTGGACACCCAAG | + | - Rev Primer CAATATGTTGTGGACACCCAAG |
| − | Repeats (ca) x10 PCR product = 297 bp start at base 65411 | + | - Repeats (ca) x10 - PCR product = 297 bp - start at base 65411 |
3) | 3) | ||
For Primer GGGTTTATGGTGTTTGTGAAGG | For Primer GGGTTTATGGTGTTTGTGAAGG | ||
| − | Rev Primer TTTAGAGTGTCTCGGAACACCA | + | - Rev Primer TTTAGAGTGTCTCGGAACACCA |
| − | Repeats (ta) x10 PCR product = 292 bp start at base 122301 | + | - Repeats (ta) x10 - PCR product = 292 bp - start at base 122301 |
| − | AT2G23380 (CLF, CURLY LEAF, ICU1, INCURVATA 1, SDG1, SET1, SETDOMAIN 1, SETDOMAIN GROUP 1 of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 00354 (query sequence starts at base 64799) | + | <BR/>AT2G23380 (CLF, CURLY LEAF, ICU1, INCURVATA 1, SDG1, SET1, SETDOMAIN 1, SETDOMAIN GROUP 1 of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 00354 (query sequence starts at base 64799) |
| − | AT4G02020 (EZA1, SDG10, SET DOMAIN-CONTAINING PROTEIN 10, SWINGER, SWN of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 00354 (query sequence starts at base 64799) | + | <BR/>AT4G02020 (EZA1, SDG10, SET DOMAIN-CONTAINING PROTEIN 10, SWINGER, SWN of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 00354 (query sequence starts at base 64799) |
| − | AT1G02580 (EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEA, MEDEA, SDG5, SET DOMAIN-CONTAINING PROTEIN 5 of the Polycomb pathway) found in Scaffold 00354 (query sequence starts at base 64805) | + | <br/>AT1G02580 (EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEA, MEDEA, SDG5, SET DOMAIN-CONTAINING PROTEIN 5 of the Polycomb pathway) found in Scaffold 00354 (query sequence starts at base 64805) |
1) | 1) | ||
For Primer TCAGGAACATTGACTATGCAGG | For Primer TCAGGAACATTGACTATGCAGG | ||
| − | Rev Primer GTTAAAGAAACGATCCGACTGC | + | - Rev Primer GTTAAAGAAACGATCCGACTGC |
| − | Repeats (tc) x8 PCR product = 285 bp start at base 53913 | + | - Repeats (tc) x8 - PCR product = 285 bp - start at base 53913 |
2) | 2) | ||
For Primer ATTTCAACTGATTTAGCTGGGC | For Primer ATTTCAACTGATTTAGCTGGGC | ||
| − | Rev Primer CTTGAGTTCAATCCCTCATCTACA | + | - Rev Primer CTTGAGTTCAATCCCTCATCTACA |
| − | Repeats (ct) x31 PCR product = 222 bp start at base 49463 | + | - Repeats (ct) x31 - PCR product = 222 bp - start at base 49463 |
3) | 3) | ||
For Primer GTTGCCAGCTGAATATCCTTTC | For Primer GTTGCCAGCTGAATATCCTTTC | ||
| − | Rev Primer GTGTGTGTGTGTGTGTGTGTGA | + | - Rev Primer GTGTGTGTGTGTGTGTGTGTGA |
| − | Repeats (tc) x14 PCR product = 163 bp start at base 81106 | + | - Repeats (tc) x14 - PCR product = 163 bp - start at base 81106 |
| − | AT1G65480 (FLOWERING LOCUS T, FT of the Ambient Temperature pathway) found in Scaffold 00357 (query sequence starts at base 58774) | + | <br/>AT1G65480 (FLOWERING LOCUS T, FT of the Ambient Temperature pathway) found in Scaffold 00357 (query sequence starts at base 58774) |
| − | AT4G20370 (TSF, TWIN SISTER OF FT of the Ambient Temperature pathway) found in Scaffold 00357 (query sequence starts at base 58807) – MIKE N | + | <BR/>AT4G20370 (TSF, TWIN SISTER OF FT of the Ambient Temperature pathway) found in Scaffold 00357 (query sequence starts at base 58807) – MIKE N |
1) | 1) | ||
For Primer GCCCACCCTTAGTTATGTTGAC | For Primer GCCCACCCTTAGTTATGTTGAC | ||
| − | Rev Primer GAGAGACAGAAGACAGAGAAGAGG | + | - Rev Primer GAGAGACAGAAGACAGAGAAGAGG |
| − | Repeats (ct) x11 PCR product = 225 bp start at base 76826 | + | - Repeats (ct) x11 - PCR product = 225 bp - start at base 76826 |
2) | 2) | ||
For Primer CGCCACGGAAATATATAGGAGA | For Primer CGCCACGGAAATATATAGGAGA | ||
| − | Rev Primer TGCACGTTTCAAAGTATTGACC | + | - Rev Primer TGCACGTTTCAAAGTATTGACC |
| − | Repeats (at) x10 PCR product = 221 bp start at base 29021 | + | - Repeats (at) x10 - PCR product = 221 bp - start at base 29021 |
3) | 3) | ||
For Primer GCAATTGCGTAGATGACTTCAG | For Primer GCAATTGCGTAGATGACTTCAG | ||
| − | Rev Primer CTCCAAAGATGTATGCCCTACC | + | - Rev Primer CTCCAAAGATGTATGCCCTACC |
| − | Repeats (tc) x13 PCR product = 197 bp start at base 83551 | + | - Repeats (tc) x13 - PCR product = 197 bp - start at base 83551 |
| − | AT2G17770 (ATBZIP27, BASIC REGION/LEUCINE ZIPPER MOTIF 27, BZIP27, FD PARALOG, FDP of the Ambient Temperature pathway) found in Scaffold 00367 (query sequence starts at base 113139) | + | <BR/>AT2G17770 (ATBZIP27, BASIC REGION/LEUCINE ZIPPER MOTIF 27, BZIP27, FD PARALOG, FDP of the Ambient Temperature pathway) found in Scaffold 00367 (query sequence starts at base 113139) |
| − | AT4G35900 (ATBZIP14, FD, FD-1 of the Ambient Temperature pathway) found in Scaffold 00367 (query sequence starts at base 113139) | + | <BR/>AT4G35900 (ATBZIP14, FD, FD-1 of the Ambient Temperature pathway) found in Scaffold 00367 (query sequence starts at base 113139) |
1) | 1) | ||
For Primer GTTTTTGTTGGAGAGGAAGTCG | For Primer GTTTTTGTTGGAGAGGAAGTCG | ||
| − | Rev Primer AGTACCAAATCCCCAAACACAC | + | - Rev Primer AGTACCAAATCCCCAAACACAC |
| − | Repeats (ag) x9 PCR product = 188 bp start at base 113601 | + | - Repeats (ag) x9 - PCR product = 188 bp - start at base 113601 |
2) | 2) | ||
For Primer GCTTTCTCAGAATGGAGCTGTT | For Primer GCTTTCTCAGAATGGAGCTGTT | ||
| − | Rev Primer TCAGACAGAGCAGTTGGGTAGA | + | - Rev Primer TCAGACAGAGCAGTTGGGTAGA |
| − | Repeats (ca) x10 PCR product = 278 bp start at base 110027 | + | - Repeats (ca) x10 - PCR product = 278 bp - start at base 110027 |
3) | 3) | ||
For Primer GATGAAGAGAAGTCTCGGGCTA | For Primer GATGAAGAGAAGTCTCGGGCTA | ||
| − | Rev Primer GCACCATGCAAGGATTATAACA | + | - Rev Primer GCACCATGCAAGGATTATAACA |
| − | Repeats (ct) x10 PCR product = 243 bp start at base 100134 | + | - Repeats (ct) x10 - PCR product = 243 bp - start at base 100134 |
| − | AT2G25930 (EARLY FLOWERING 3, ELF3, PYK20 of the Light Signaling pathway) found in Scaffold 00371 (query sequence starts at base 73111) | + | <BR/>AT2G25930 (EARLY FLOWERING 3, ELF3, PYK20 of the Light Signaling pathway) found in Scaffold 00371 (query sequence starts at base 73111) |
1) | 1) | ||
For Primer GTGTGCGTGAGAGAGAGAGAGA | For Primer GTGTGCGTGAGAGAGAGAGAGA | ||
| − | Rev Primer ATCTGAAAAGAAAGGCTTGTGG | + | - Rev Primer ATCTGAAAAGAAAGGCTTGTGG |
| − | Repeats (ag) x18 PCR product = 245 bp start at base 71081 | + | - Repeats (ag) x18 - PCR product = 245 bp - start at base 71081 |
2) | 2) | ||
For Primer ATCCAGTTGAAGGCATCTGATT | For Primer ATCCAGTTGAAGGCATCTGATT | ||
| − | Rev Primer GGCAATGCCTTTTCTGTAGTTT | + | - Rev Primer GGCAATGCCTTTTCTGTAGTTT |
| − | Repeats (ga) x17 PCR product = 283 bp start at base 71026 | + | - Repeats (ga) x17 - PCR product = 283 bp - start at base 71026 |
3) | 3) | ||
For Primer ATCCAGTTGAAGGCATCTGATT | For Primer ATCCAGTTGAAGGCATCTGATT | ||
| − | Rev Primer GGCAATGCCTTTTCTGTAGTTT | + | - Rev Primer GGCAATGCCTTTTCTGTAGTTT |
| − | Repeats (tg) x9 PCR product = 283 bp start at base 71005 | + | - Repeats (tg) x9 - PCR product = 283 bp - start at base 71005 |
| − | AT3G24440 (VERNALIZATION 5, VIL1, VIN3-LIKE 1, VRN5 of the Autonomous and Vernalization pathways) found in Scaffold 00396 (query sequence starts at base 73795) | + | <BR/>AT3G24440 (VERNALIZATION 5, VIL1, VIN3-LIKE 1, VRN5 of the Autonomous and Vernalization pathways) found in Scaffold 00396 (query sequence starts at base 73795) |
| − | AT2G18870 (VEL3, VERNALIZATION5/VIN3-LIKE 3, VIL4, VIN3-LIKE 4 of the Autonomous pathway) found in Scaffold 00396 (query sequence starts at base 73810) | + | <BR/>AT2G18870 (VEL3, VERNALIZATION5/VIN3-LIKE 3, VIL4, VIN3-LIKE 4 of the Autonomous pathway) found in Scaffold 00396 (query sequence starts at base 73810) |
1) | 1) | ||
For Primer CATCGGTCCATAGAGAACACAA | For Primer CATCGGTCCATAGAGAACACAA | ||
| − | Rev Primer GCAGAGTCGTGTCCTTTCTTTT | + | - Rev Primer GCAGAGTCGTGTCCTTTCTTTT |
| − | Repeats (ag) x9 PCR product = 232 bp start at base 82383 | + | - Repeats (ag) x9 - PCR product = 232 bp - start at base 82383 |
2) | 2) | ||
For Primer GGGGATGGTTACCTGTGAATAA | For Primer GGGGATGGTTACCTGTGAATAA | ||
| − | Rev Primer TGACTCATCAGTCCCTCTCTCA | + | - Rev Primer TGACTCATCAGTCCCTCTCTCA |
| − | Repeats (ct) x8 PCR product = 233 bp start at base 85845 | + | - Repeats (ct) x8 - PCR product = 233 bp - start at base 85845 |
3) | 3) | ||
For Primer ATTTTTAGAACTGTGCCAAGCC | For Primer ATTTTTAGAACTGTGCCAAGCC | ||
| − | Rev Primer CCTACTTGAACCGAACTGGTTT | + | - Rev Primer CCTACTTGAACCGAACTGGTTT |
| − | Repeats (tc) x9 PCR product = 298 bp start at base 50548 | + | - Repeats (tc) x9 - PCR product = 298 bp - start at base 50548 |
| − | AT3G21320 (of the Light Signaling pathway) found in Scaffold 00509 (query sequence starts at base 181887) | + | <BR/>AT3G21320 (of the Light Signaling pathway) found in Scaffold 00509 (query sequence starts at base 181887) |
1) | 1) | ||
For Primer TCACGTAGGCAGTCAAAACAAC | For Primer TCACGTAGGCAGTCAAAACAAC | ||
| − | Rev Primer GGCAACATATGTCGGGTAATTT | + | - Rev Primer GGCAACATATGTCGGGTAATTT |
| − | Repeats (ct) x26 PCR product = 259 bp start at base 189409 | + | - Repeats (ct) x26 - PCR product = 259 bp - start at base 189409 |
2) | 2) | ||
For Primer AGCTCCTCCCATTACAATCTCA | For Primer AGCTCCTCCCATTACAATCTCA | ||
| − | Rev Primer ATGAACTGCTTATGCAATGTGG | + | - Rev Primer ATGAACTGCTTATGCAATGTGG |
| − | Repeats (tg) x12 PCR product = 272 bp start at base 169832 | + | - Repeats (tg) x12 - PCR product = 272 bp - start at base 169832 |
3) | 3) | ||
For Primer GAAATCAATGGAACTACCTCGG | For Primer GAAATCAATGGAACTACCTCGG | ||
| − | Rev Primer AAATACTACATGGCGCTGTTGA | + | - Rev Primer AAATACTACATGGCGCTGTTGA |
| − | Repeats (at) x10 PCR product = 259 bp start at base 149049 | + | - Repeats (at) x10 - PCR product = 259 bp - start at base 149049 |
| − | AT1G47250 (20S PROTEASOME ALPHA SUBUNIT F2, PAF2 of the Vernalization pathway) found in Scaffold 00528 (query sequence starts at base 110933) | + | <br/>AT1G47250 (20S PROTEASOME ALPHA SUBUNIT F2, PAF2 of the Vernalization pathway) found in Scaffold 00528 (query sequence starts at base 110933) |
| − | AT5G42790 (ARS5, ARSENIC TOLERANCE 5, ATPSM30, PAF1, PROTEASOME ALPHA SUBUNIT F1 of the Vernalization pathway) found in Scaffold 00528 (query sequence starts at base 110933) | + | <br/>AT5G42790 (ARS5, ARSENIC TOLERANCE 5, ATPSM30, PAF1, PROTEASOME ALPHA SUBUNIT F1 of the Vernalization pathway) found in Scaffold 00528 (query sequence starts at base 110933) |
1) | 1) | ||
For Primer CACGAAAGTAGACGCTGTGAAA | For Primer CACGAAAGTAGACGCTGTGAAA | ||
| − | Rev Primer ATTTGAGCTGTCCAAAACACG | + | - Rev Primer ATTTGAGCTGTCCAAAACACG |
| − | Repeats (ata) x9 PCR product = 248 bp start at base 108589 | + | - Repeats (ata) x9 - PCR product = 248 bp - start at base 108589 |
2) | 2) | ||
For Primer ACTTCCCTTAGTGCTGCTTGTC | For Primer ACTTCCCTTAGTGCTGCTTGTC | ||
| − | Rev Primer GGACTAGGTTTTCTTCCCCACT | + | - Rev Primer GGACTAGGTTTTCTTCCCCACT |
| − | Repeats (tta) x7 PCR product = 165 bp start at base 112665 | + | - Repeats (tta) x7 - PCR product = 165 bp - start at base 112665 |
3) | 3) | ||
For Primer GAGAGAGACTGTGCATACACGC | For Primer GAGAGAGACTGTGCATACACGC | ||
| − | Rev Primer AAAGGAAAAGAAGAACAAGGGG | + | - Rev Primer AAAGGAAAAGAAGAACAAGGGG |
| − | Repeats (ga) x10 PCR product = 223 bp start at base 124597 | + | - Repeats (ga) x10 - PCR product = 223 bp - start at base 124597 |
| − | AT5G58230 (ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, ATMSI1, MATERNAL EFFECT EMBRYO ARREST 70, MEE70, MSI1, MULTICOPY SUPRESSOR OF IRA1 of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 00615 (query sequence starts at base 161081) | + | <br/>AT5G58230 (ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, ATMSI1, MATERNAL EFFECT EMBRYO ARREST 70, MEE70, MSI1, MULTICOPY SUPRESSOR OF IRA1 of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 00615 (query sequence starts at base 161081) |
1) | 1) | ||
For Primer GTGGGATCTTAGCAGGTTTGTC | For Primer GTGGGATCTTAGCAGGTTTGTC | ||
| − | Rev Primer TACAGTGGGAGGTGGAGTTTTT | + | - Rev Primer TACAGTGGGAGGTGGAGTTTTT |
| − | Repeats (ct) x10 PCR product = 128 bp start at base 163332 | + | - Repeats (ct) x10 - PCR product = 128 bp - start at base 163332 |
2) | 2) | ||
For Primer AGAACCATAGCATAACGGCCTA | For Primer AGAACCATAGCATAACGGCCTA | ||
| − | Rev Primer TATGGAGGGAAGAAATTTGGTG | + | - Rev Primer TATGGAGGGAAGAAATTTGGTG |
| − | Repeats (tc) x12 PCR product = 145 bp start at base 158582 | + | - Repeats (tc) x12 - PCR product = 145 bp - start at base 158582 |
3) | 3) | ||
For Primer TAGCACAGGCTCCCATTTTTAT | For Primer TAGCACAGGCTCCCATTTTTAT | ||
| − | Rev Primer GCTAGTCTGCAGAGCCAAAGAT | + | - Rev Primer GCTAGTCTGCAGAGCCAAAGAT |
| − | Repeats (ag) x8 PCR product = 219 bp start at base 120273 | + | - Repeats (ag) x8 - PCR product = 219 bp - start at base 120273 |
| − | AT1G04400 (AT-PHH1, ATCRY2, CRY2, CRYPTOCHROME 2, FHA, PHH1 of the Light Signaling pathway) found in Scaffold 00649 (query sequence starts at base 28296) – MIKE N | + | <br/>AT1G04400 (AT-PHH1, ATCRY2, CRY2, CRYPTOCHROME 2, FHA, PHH1 of the Light Signaling pathway) found in Scaffold 00649 (query sequence starts at base 28296) – MIKE N |
1) | 1) | ||
For Primer TGGTGGTGGTATATGGGTAACA | For Primer TGGTGGTGGTATATGGGTAACA | ||
| − | Rev Primer AATCAACAATCTCACTGCCGTT | + | - Rev Primer AATCAACAATCTCACTGCCGTT |
| − | Repeats (gtg) x8 PCR product = 192 bp start at base 22759 | + | - Repeats (gtg) x8 - PCR product = 192 bp - start at base 22759 |
2) | 2) | ||
For Primer GTAGTGTGATGGTTATGGCGTG | For Primer GTAGTGTGATGGTTATGGCGTG | ||
| − | Rev Primer TATACCACCACCACTATTGCCA | + | - Rev Primer TATACCACCACCACTATTGCCA |
| − | Repeats (tgg) x7 PCR product = 131 bp start at base 22555 | + | - Repeats (tgg) x7 - PCR product = 131 bp - start at base 22555 |
3) | 3) | ||
For Primer TTGTTTCGCCATTAGGAGAGAT | For Primer TTGTTTCGCCATTAGGAGAGAT | ||
| − | Rev Primer CCTAAACCCAACTACCACTCCA | + | - Rev Primer CCTAAACCCAACTACCACTCCA |
| − | Repeats (ga) x10 PCR product = 139 bp start at base 49549 | + | - Repeats (ga) x10 - PCR product = 139 bp - start at base 49549 |
| − | AT5G39660 (CDF2, CYCLING DOF FACTOR 2 of the Light Signaling pathway) found in Scaffold 00651 (query sequence starts at base 19066) – MIKE N | + | <br/>AT5G39660 (CDF2, CYCLING DOF FACTOR 2 of the Light Signaling pathway) found in Scaffold 00651 (query sequence starts at base 19066) – MIKE N |
1) | 1) | ||
For Primer AAGTTGGTTTTGTGGCCTTAGA | For Primer AAGTTGGTTTTGTGGCCTTAGA | ||
| − | Rev Primer TTTTTGGGCTAACGAAGAGTGT | + | - Rev Primer TTTTTGGGCTAACGAAGAGTGT |
| − | Repeats (ct) x7 PCR product = 295 bp start at base 22514 | + | - Repeats (ct) x7 - PCR product = 295 bp - start at base 22514 |
2) | 2) | ||
For Primer TCAAAAGCACACAGAATCAAGC | For Primer TCAAAAGCACACAGAATCAAGC | ||
| − | Rev Primer TGCAAGAGCCAATCTCTCATAA | + | - Rev Primer TGCAAGAGCCAATCTCTCATAA |
| − | Repeats (ga) x7 PCR product = 275 bp start at base 27722 | + | - Repeats (ga) x7 - PCR product = 275 bp - start at base 27722 |
3) | 3) | ||
For Primer CCAGTTAGATTGGTGACATTGC | For Primer CCAGTTAGATTGGTGACATTGC | ||
| − | Rev Primer GGACCCATCACTAGATCCTCTG | + | - Rev Primer GGACCCATCACTAGATCCTCTG |
| − | Repeats (ct) x12 PCR product = 192 bp start at base 37067 | + | - Repeats (ct) x12 - PCR product = 192 bp - start at base 37067 |
| − | AT5G23150 (ENHANCER OF AG-4 2, HUA2 of the Vernalization pathway) found in Scaffold 00686 (query sequence starts at base 102689) | + | <br/>AT5G23150 (ENHANCER OF AG-4 2, HUA2 of the Vernalization pathway) found in Scaffold 00686 (query sequence starts at base 102689) |
1) | 1) | ||
For Primer GATGAAGAGAAGGCATCAGGTC | For Primer GATGAAGAGAAGGCATCAGGTC | ||
| − | Rev Primer AATACCGATGTTTACCGGAGTG | + | - Rev Primer AATACCGATGTTTACCGGAGTG |
| − | Repeats (ct) x14 PCR product = 221 bp start at base 106315 | + | - Repeats (ct) x14 - PCR product = 221 bp - start at base 106315 |
2) | 2) | ||
For Primer GGATAATCAAAGATGCGAGAGG | For Primer GGATAATCAAAGATGCGAGAGG | ||
| − | Rev Primer ATACACCTTTGGATTCTGTGGG | + | - Rev Primer ATACACCTTTGGATTCTGTGGG |
| − | Repeats (tg) x11 PCR product = 290 bp start at base 90834 | + | - Repeats (tg) x11 - PCR product = 290 bp - start at base 90834 |
3) | 3) | ||
For Primer ACACAACCTGCAATACTCCTCC | For Primer ACACAACCTGCAATACTCCTCC | ||
| − | Rev Primer TACAAGGTGTGGTGAGTAACGG | + | - Rev Primer TACAAGGTGTGGTGAGTAACGG |
| − | Repeats (ta) x12 PCR product = 284 bp start at base 117010 | + | - Repeats (ta) x12 - PCR product = 284 bp - start at base 117010 |
| − | AT2G42200 (ATSPL9, SPL9, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9 of the Age pathway) found in Scaffold 00691 (query sequence starts at base 61795) – CATHERINE D | + | <BR/>AT2G42200 (ATSPL9, SPL9, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9 of the Age pathway) found in Scaffold 00691 (query sequence starts at base 61795) – CATHERINE D |
1) | 1) | ||
For Primer TGTGGACCAACCAACATTAGAG | For Primer TGTGGACCAACCAACATTAGAG | ||
| − | Rev Primer GAGACTTTTTGTGGTAGGCACC | + | - Rev Primer GAGACTTTTTGTGGTAGGCACC |
| − | Repeats (ta) x9 PCR product = 298 bp start at base 80542 | + | - Repeats (ta) x9 - PCR product = 298 bp - start at base 80542 |
2) | 2) | ||
For Primer CACCTTGAGATCTCTCTCTCTCTC | For Primer CACCTTGAGATCTCTCTCTCTCTC | ||
| − | Rev Primer CCCAATCCACATTGAACAGAAT | + | - Rev Primer CCCAATCCACATTGAACAGAAT |
| − | Repeats (tc) x16 PCR product = 300 bp start at base 36515 | + | - Repeats (tc) x16 - PCR product = 300 bp - start at base 36515 |
3) | 3) | ||
For Primer GCACCATTCTTAATAACATTGCACC | For Primer GCACCATTCTTAATAACATTGCACC | ||
| − | Rev Primer CACGAGAGAGAGAGAGAGAGAGAGA | + | - Rev Primer CACGAGAGAGAGAGAGAGAGAGAGA |
| − | Repeats (tc) x11 PCR product = 298 bp start at base 36283 | + | - Repeats (tc) x11 - PCR product = 298 bp - start at base 36283 |
| − | AT5G17690 (ATLHP1, LHP1, LIKE HETEROCHROMATIN PROTEIN 1, TERMINAL FLOWER 2, TFL2 of the Polycomb pathway) found in Scaffold 00696 (query sequence starts at base 128983) | + | <br/>AT5G17690 (ATLHP1, LHP1, LIKE HETEROCHROMATIN PROTEIN 1, TERMINAL FLOWER 2, TFL2 of the Polycomb pathway) found in Scaffold 00696 (query sequence starts at base 128983) |
1) | 1) | ||
For Primer CCACCTAATCCATTCAAAAAGG | For Primer CCACCTAATCCATTCAAAAAGG | ||
| − | Rev Primer TACCAAATCCCTCAATCCAAAG | + | - Rev Primer TACCAAATCCCTCAATCCAAAG |
| − | Repeats (ag) x9 PCR product = 293 bp start at base 127286 | + | - Repeats (ag) x9 - PCR product = 293 bp - start at base 127286 |
2) | 2) | ||
For Primer GAGAGATGGGGCAACAAAAATA | For Primer GAGAGATGGGGCAACAAAAATA | ||
| − | Rev Primer GCAGGCCTTAATATGCAAGAAC | + | - Rev Primer GCAGGCCTTAATATGCAAGAAC |
| − | Repeats (ga) x8 PCR product = 143 bp start at base 81894 | + | - Repeats (ga) x8 - PCR product = 143 bp - start at base 81894 |
3) | 3) | ||
For Primer GCTACAAACCAAAAAGAATCGG | For Primer GCTACAAACCAAAAAGAATCGG | ||
| − | Rev Primer AAAAATCCTCCTTGACTGGGTT | + | - Rev Primer AAAAATCCTCCTTGACTGGGTT |
| − | Repeats (ac) x8 PCR product = 298 bp start at base 45233 | + | - Repeats (ac) x8 - PCR product = 298 bp - start at base 45233 |
| − | AT2G19520 (ACG1, ATMSI4, FVE, MSI4, MULTICOPY SUPPRESSOR OF IRA1 4, NFC04, NFC4 of the Ambient Temperature and Autonomous pathways) found in Scaffold 00728 (query sequence starts at base 8716) | + | <BR/>AT2G19520 (ACG1, ATMSI4, FVE, MSI4, MULTICOPY SUPPRESSOR OF IRA1 4, NFC04, NFC4 of the Ambient Temperature and Autonomous pathways) found in Scaffold 00728 (query sequence starts at base 8716) |
1) | 1) | ||
For Primer GCAGAAGGAAAACCAAAATCAC | For Primer GCAGAAGGAAAACCAAAATCAC | ||
| − | Rev Primer GAGAGGGAGAGAGAGAAGGGAC | + | - Rev Primer GAGAGGGAGAGAGAGAAGGGAC |
| − | Repeats (ga) x11 PCR product = 263 bp start at base 2899 | + | - Repeats (ga) x11 - PCR product = 263 bp - start at base 2899 |
2) | 2) | ||
For Primer TAACCGGTTTTACCGTTTTCC | For Primer TAACCGGTTTTACCGTTTTCC | ||
| − | Rev Primer AGAACCAAGAATTCTGCATTGG | + | - Rev Primer AGAACCAAGAATTCTGCATTGG |
| − | Repeats (tc) x10 PCR product = 298 bp start at base 111 | + | - Repeats (tc) x10 - PCR product = 298 bp - start at base 111 |
3) | 3) | ||
For Primer CTTTATCATCTGCCTGCCTCTT | For Primer CTTTATCATCTGCCTGCCTCTT | ||
| − | Rev Primer CGTAATAAAGAAGGTGGTTCGG | + | - Rev Primer CGTAATAAAGAAGGTGGTTCGG |
| − | Repeats (tc) x16 PCR product = 162 bp start at base 36059 | + | - Repeats (tc) x16 - PCR product = 162 bp - start at base 36059 |
| − | AT2G32950 (ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, ATCOP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, COP1, DEETIOLATED MUTANT 340, DET340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1 of the Light Signaling pathway) found in Scaffold 00734 (query sequence starts at base 142779) | + | <BR/>AT2G32950 (ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, ATCOP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, COP1, DEETIOLATED MUTANT 340, DET340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1 of the Light Signaling pathway) found in Scaffold 00734 (query sequence starts at base 142779) |
| − | AT2G46340 (SPA1, SUPPRESSOR OF PHYA-105 1 of the Light Signaling pathway) found in Scaffold 00734 (query sequence starts at base 142779) | + | <BR/>AT2G46340 (SPA1, SUPPRESSOR OF PHYA-105 1 of the Light Signaling pathway) found in Scaffold 00734 (query sequence starts at base 142779) |
| − | AT1G53090 (SPA1-RELATED 4, SPA4 of the Light Signaling pathway) found in Scaffold 00734 (query sequence starts at base 143450) | + | <br/>AT1G53090 (SPA1-RELATED 4, SPA4 of the Light Signaling pathway) found in Scaffold 00734 (query sequence starts at base 143450) |
| − | AT3G15354 (SPA1-RELATED 3, SPA3 of the Light Signaling pathway) found in Scaffold 00734 (query sequence starts at base 143450) | + | <BR/>AT3G15354 (SPA1-RELATED 3, SPA3 of the Light Signaling pathway) found in Scaffold 00734 (query sequence starts at base 143450) |
1) | 1) | ||
For Primer GGAGGGGAAACAAGGATAGAAC | For Primer GGAGGGGAAACAAGGATAGAAC | ||
| − | Rev Primer ATATTGAGGCTGTGGTCGTCTT | + | - Rev Primer ATATTGAGGCTGTGGTCGTCTT |
| − | Repeats (aag) x8 PCR product = 186 bp start at base 148205 | + | - Repeats (aag) x8 - PCR product = 186 bp - start at base 148205 |
2) | 2) | ||
For Primer TTACCCCCTCTCTCTCTCATACC | For Primer TTACCCCCTCTCTCTCTCATACC | ||
| − | Rev Primer AAACATCTTCAATCATGCTCCC | + | - Rev Primer AAACATCTTCAATCATGCTCCC |
| − | Repeats (tc) x15 PCR product = 298 bp start at base 136748 | + | - Repeats (tc) x15 - PCR product = 298 bp - start at base 136748 |
3) | 3) | ||
For Primer CCACAAAACAGCAGTAACCAAA | For Primer CCACAAAACAGCAGTAACCAAA | ||
| − | Rev Primer TACGGTATGAGAGAGAGAGGGG | + | - Rev Primer TACGGTATGAGAGAGAGAGGGG |
| − | Repeats (ga) x10 PCR product = 122 bp start at base 136457 | + | - Repeats (ga) x10 - PCR product = 122 bp - start at base 136457 |
| − | AT2G18790 (HY3, OOP1, OUT OF PHASE 1, PHYB, PHYTOCHROME B of the Light Signaling pathway) found in Scaffold 00751 (query sequence starts at base 83698) | + | <BR/>AT2G18790 (HY3, OOP1, OUT OF PHASE 1, PHYB, PHYTOCHROME B of the Light Signaling pathway) found in Scaffold 00751 (query sequence starts at base 83698) |
| − | AT4G16250 (PHYD, PHYTOCHROME D of the Light Signaling pathway) found in Scaffold 00751 (query sequence starts at base 83707) | + | <BR/>AT4G16250 (PHYD, PHYTOCHROME D of the Light Signaling pathway) found in Scaffold 00751 (query sequence starts at base 83707) |
| − | AT4G18130 (PHYE, PHYTOCHROME E of the Light Signaling pathway) found in Scaffold 00751 (query sequence starts at base 83749) – MIKE N | + | <BR/>AT4G18130 (PHYE, PHYTOCHROME E of the Light Signaling pathway) found in Scaffold 00751 (query sequence starts at base 83749) – MIKE N |
1) | 1) | ||
For Primer CCCGAAAATACCCTTTCTCTCT | For Primer CCCGAAAATACCCTTTCTCTCT | ||
| − | Rev Primer GGCAATTACCAATTACGTGTCA | + | - Rev Primer GGCAATTACCAATTACGTGTCA |
| − | Repeats (aga) x8 PCR product = 265 bp start at base 81899 | + | - Repeats (aga) x8 - PCR product = 265 bp - start at base 81899 |
2) | 2) | ||
For Primer AAGAGGGGTAGACCAAAATTGA | For Primer AAGAGGGGTAGACCAAAATTGA | ||
| − | Rev Primer AATTTCACTCCAACCAAGAAGG | + | - Rev Primer AATTTCACTCCAACCAAGAAGG |
| − | Repeats (ag) x10 PCR product = 262 bp start at base 92356 | + | - Repeats (ag) x10 - PCR product = 262 bp - start at base 92356 |
3) | 3) | ||
For Primer TCTCTCATGCATGGATGGTTAT | For Primer TCTCTCATGCATGGATGGTTAT | ||
| − | Rev Primer CATTGAACATCTACCTGTGGGA | + | - Rev Primer CATTGAACATCTACCTGTGGGA |
| − | Repeats (ct) x10 PCR product = 298 bp start at base 73385 | + | - Repeats (ct) x10 - PCR product = 298 bp - start at base 73385 |
| − | AT5G61380 (APRR1, ATTOC1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, TOC1 of the Light Signaling pathway) found in Scaffold 00753 (query sequence starts at base 70468) | + | <br/>AT5G61380 (APRR1, ATTOC1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, TOC1 of the Light Signaling pathway) found in Scaffold 00753 (query sequence starts at base 70468) |
1) | 1) | ||
For Primer CACTACATCCAAACAAAACCCA | For Primer CACTACATCCAAACAAAACCCA | ||
| − | Rev Primer TGCGTGCGATAATGGAGTATTA | + | - Rev Primer TGCGTGCGATAATGGAGTATTA |
| − | Repeats (gt) x11 PCR product = 284 bp start at base 98714 | + | - Repeats (gt) x11 - PCR product = 284 bp - start at base 98714 |
2) | 2) | ||
For Primer CCTCGTGCACATACGAAAATTA | For Primer CCTCGTGCACATACGAAAATTA | ||
| − | Rev Primer TACGTTGCACATTTTTCTCCAC | + | - Rev Primer TACGTTGCACATTTTTCTCCAC |
| − | Repeats (ta) x8 PCR product = 266 bp start at base 52292 | + | - Repeats (ta) x8 - PCR product = 266 bp - start at base 52292 |
3) | 3) | ||
For Primer ATTTCTACCCTGTCCACCAAGA | For Primer ATTTCTACCCTGTCCACCAAGA | ||
| − | Rev Primer GAGACAGAAGTGGCATCTGTGA | + | - Rev Primer GAGACAGAAGTGGCATCTGTGA |
| − | Repeats (ga) x17 PCR product = 168 bp start at base 102220 | + | - Repeats (ga) x17 - PCR product = 168 bp - start at base 102220 |
| − | AT3G18990 (REDUCED VERNALIZATION RESPONSE 1, REM39, REPRODUCTIVE MERISTEM 39, VRN1 of the Vernalization pathway) found in Scaffold 00811 (query sequence starts at base 96661) | + | <BR/>AT3G18990 (REDUCED VERNALIZATION RESPONSE 1, REM39, REPRODUCTIVE MERISTEM 39, VRN1 of the Vernalization pathway) found in Scaffold 00811 (query sequence starts at base 96661) |
1) | 1) | ||
For Primer ACAGACCCTCCTGCCTTCAC | For Primer ACAGACCCTCCTGCCTTCAC | ||
| − | Rev Primer TCTGAACTGCTCATACCCTGAA | + | - Rev Primer TCTGAACTGCTCATACCCTGAA |
| − | Repeats (ag) x21 PCR product = 251 bp start at base 89371 | + | - Repeats (ag) x21 - PCR product = 251 bp - start at base 89371 |
2) | 2) | ||
For Primer TAAGGAGTGGGCACGGTATATT | For Primer TAAGGAGTGGGCACGGTATATT | ||
| − | Rev Primer AATGTTTTGAGGTCTCTGGGAA | + | - Rev Primer AATGTTTTGAGGTCTCTGGGAA |
| − | Repeats (tc) x8 PCR product = 260 bp start at base 100084 | + | - Repeats (tc) x8 - PCR product = 260 bp - start at base 100084 |
3) | 3) | ||
For Primer GACTTAACAGCAGCCTGGTACA | For Primer GACTTAACAGCAGCCTGGTACA | ||
| − | Rev Primer AGTACCAATAAGTACCGCGTCG | + | - Rev Primer AGTACCAATAAGTACCGCGTCG |
| − | Repeats (ag) x8 PCR product = 112 bp start at base 100915 | + | - Repeats (ag) x8 - PCR product = 112 bp - start at base 100915 |
| − | AT3G07650 (B-BOX DOMAIN PROTEIN 7, BBX7, COL9, CONSTANS-LIKE 9 of the Light Signaling pathway) found in Scaffold 00832 (query sequence starts at base 89599) | + | <BR/>AT3G07650 (B-BOX DOMAIN PROTEIN 7, BBX7, COL9, CONSTANS-LIKE 9 of the Light Signaling pathway) found in Scaffold 00832 (query sequence starts at base 89599) |
1) | 1) | ||
For Primer TTATATGGTCGCTGATCCCTTT | For Primer TTATATGGTCGCTGATCCCTTT | ||
| − | Rev Primer TGAAGGGGAGAAATAGCACCTA | + | - Rev Primer TGAAGGGGAGAAATAGCACCTA |
| − | Repeats (tc) x7 PCR product = 233 bp start at base 58681 | + | - Repeats (tc) x7 - PCR product = 233 bp - start at base 58681 |
2) | 2) | ||
For Primer GACCCTGTTCAAATTTTGCTTC | For Primer GACCCTGTTCAAATTTTGCTTC | ||
| − | Rev Primer TCAAAGGAGCGGAGAAGAATAG | + | - Rev Primer TCAAAGGAGCGGAGAAGAATAG |
| − | Repeats (ga) x9 PCR product = 212 bp start at base 21272 | + | - Repeats (ga) x9 - PCR product = 212 bp - start at base 21272 |
3) | 3) | ||
For Primer GACCCTGTTCAAATTTTGCTTC | For Primer GACCCTGTTCAAATTTTGCTTC | ||
| − | Rev Primer TCAAAGGAGCGGAGAAGAATAG | + | - Rev Primer TCAAAGGAGCGGAGAAGAATAG |
| − | Repeats (ca) x8 PCR product = 212 bp start at base 21256 | + | - Repeats (ca) x8 - PCR product = 212 bp - start at base 21256 |
| − | AT5G51230 (ATEMF2, CYR1, CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, EMF2, VEF2 of the Polycomb pathway) found in Scaffold 00857 (query sequence starts at base 44887) | + | <br/>AT5G51230 (ATEMF2, CYR1, CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, EMF2, VEF2 of the Polycomb pathway) found in Scaffold 00857 (query sequence starts at base 44887) |
| − | AT4G16845 (REDUCED VERNALIZATION RESPONSE 2, VRN2 of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 00857 (query sequence starts at base 55203) | + | <BR/>AT4G16845 (REDUCED VERNALIZATION RESPONSE 2, VRN2 of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 00857 (query sequence starts at base 55203) |
| − | AT2G35670 (FERTILIZATION INDEPENDENT SEED 2, FERTILIZATION-INDEPENDENT ENDOSPERM 2, FIE2, FIS2 of the Polycomb pathway) found in Scaffold 00857 (query sequence starts at base 55565) | + | <BR/>AT2G35670 (FERTILIZATION INDEPENDENT SEED 2, FERTILIZATION-INDEPENDENT ENDOSPERM 2, FIE2, FIS2 of the Polycomb pathway) found in Scaffold 00857 (query sequence starts at base 55565) |
1) | 1) | ||
For Primer CATGTGTGTGTGATCAAAGGTG | For Primer CATGTGTGTGTGATCAAAGGTG | ||
| − | Rev Primer ACGTATGACAGACGCAAAACAC | + | - Rev Primer ACGTATGACAGACGCAAAACAC |
| − | Repeats (tc) x9 PCR product = 274 bp start at base 67373 | + | - Repeats (tc) x9 - PCR product = 274 bp - start at base 67373 |
2) | 2) | ||
For Primer CCAAAGCCTTAAAAACGACACT | For Primer CCAAAGCCTTAAAAACGACACT | ||
| − | Rev Primer ATGATTGGAAAGAAGGGAGTGA | + | - Rev Primer ATGATTGGAAAGAAGGGAGTGA |
| − | Repeats (ct) x11 PCR product = 204 bp start at base 113486 | + | - Repeats (ct) x11 - PCR product = 204 bp - start at base 113486 |
3) | 3) | ||
For Primer CCCCCTCTATATATCCACCACA | For Primer CCCCCTCTATATATCCACCACA | ||
| − | Rev Primer GAGGGTACTGGTGATGAAGGAG | + | - Rev Primer GAGGGTACTGGTGATGAAGGAG |
| − | Repeats (cac) x8 PCR product = 214 bp start at base 125050 | + | - Repeats (cac) x8 - PCR product = 214 bp - start at base 125050 |
| − | AT1G77300 (ASH1 HOMOLOG 2, ASHH2, CAROTENOID CHLOROPLAST REGULATORY1, CCR1, EARLY FLOWERING IN SHORT DAYS, EFS, LAZ2, LAZARUS 2, SDG8, SET DOMAIN GROUP 8 of the Vernalization pathway) found in Scaffold 00894 (query sequence starts at base 89213) | + | <br/>AT1G77300 (ASH1 HOMOLOG 2, ASHH2, CAROTENOID CHLOROPLAST REGULATORY1, CCR1, EARLY FLOWERING IN SHORT DAYS, EFS, LAZ2, LAZARUS 2, SDG8, SET DOMAIN GROUP 8 of the Vernalization pathway) found in Scaffold 00894 (query sequence starts at base 89213) |
1) | 1) | ||
For Primer GTAAAAGCGTTCGTATTTGCCT | For Primer GTAAAAGCGTTCGTATTTGCCT | ||
| − | Rev Primer TTAAGGGTGGCTCTGATACCAT | + | - Rev Primer TTAAGGGTGGCTCTGATACCAT |
| − | Repeats (ct) x10 PCR product = 295 bp start at base 77010 | + | - Repeats (ct) x10 - PCR product = 295 bp - start at base 77010 |
2) | 2) | ||
For Primer AAACTGCTTACTTTCCGTTTGC | For Primer AAACTGCTTACTTTCCGTTTGC | ||
| − | Rev Primer TCATGTGCTGACCTACAAATCC | + | - Rev Primer TCATGTGCTGACCTACAAATCC |
| − | Repeats (tag) x10 PCR product = 254 bp start at base 71796 | + | - Repeats (tag) x10 - PCR product = 254 bp - start at base 71796 |
3) | 3) | ||
For Primer AAAGAAGCACCGAACTGGATAG | For Primer AAAGAAGCACCGAACTGGATAG | ||
| − | Rev Primer CGGTTCCGGGTACATATAAAAA | + | - Rev Primer CGGTTCCGGGTACATATAAAAA |
| − | Repeats (ga) x10 PCR product = 293 bp start at base 92614 | + | - Repeats (ga) x10 - PCR product = 293 bp - start at base 92614 |
| − | AT5G37055 (ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING of the Vernalization pathway) found in Scaffold 00925 (query sequence starts at base 38143) | + | <br/>AT5G37055 (ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING of the Vernalization pathway) found in Scaffold 00925 (query sequence starts at base 38143) |
1) | 1) | ||
For Primer GCCTGATAGAAGGGACGTACAC | For Primer GCCTGATAGAAGGGACGTACAC | ||
| − | Rev Primer TGCTGGATGTATCCTTCATTTG | + | - Rev Primer TGCTGGATGTATCCTTCATTTG |
| − | Repeats (ctt) x8 PCR product = 286 bp start at base 45585 | + | - Repeats (ctt) x8 - PCR product = 286 bp - start at base 45585 |
2) | 2) | ||
For Primer GAATGGCGACATTGTTAGATCA | For Primer GAATGGCGACATTGTTAGATCA | ||
| − | Rev Primer TAGAAATCCCACGATACGAAGG | + | - Rev Primer TAGAAATCCCACGATACGAAGG |
| − | Repeats (tg) x11 PCR product = 173 bp start at base 17776 | + | - Repeats (tg) x11 - PCR product = 173 bp - start at base 17776 |
3) | 3) | ||
For Primer CTTTCAGGATTCATTTTCCAGC | For Primer CTTTCAGGATTCATTTTCCAGC | ||
| − | Rev Primer TGTTGGCTTCACTCCATGTATC | + | - Rev Primer TGTTGGCTTCACTCCATGTATC |
| − | Repeats (ag) x8 PCR product = 204 bp start at base 5444 | + | - Repeats (ag) x8 - PCR product = 204 bp - start at base 5444 |
| − | AT3G25730 (EDF3, ETHYLENE RESPONSE DNA BINDING FACTOR 3 of the Light Signaling pathway) found in Scaffold 00930 (query sequence starts at base 63060) | + | <BR/>AT3G25730 (EDF3, ETHYLENE RESPONSE DNA BINDING FACTOR 3 of the Light Signaling pathway) found in Scaffold 00930 (query sequence starts at base 63060) |
| − | AT1G13260 (EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, RELATED TO ABI3/VP1 1 of the Light Signaling pathway) found in Scaffold 00930 (query sequence starts at base 63069) | + | <br/>AT1G13260 (EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, RELATED TO ABI3/VP1 1 of the Light Signaling pathway) found in Scaffold 00930 (query sequence starts at base 63069) |
| − | AT1G25560 (EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 of the Light Signaling pathway) found in Scaffold 00930 (query sequence starts at base 63096) | + | <br/>AT1G25560 (EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 of the Light Signaling pathway) found in Scaffold 00930 (query sequence starts at base 63096) |
| − | AT1G68840 (ATRAV2, EDF2, ETHYLENE RESPONSE DNA BINDING FACTOR 2, RAP2.8, RAV2, RELATED TO ABI3/VP1 2, RELATED TO AP2 8, TEM2, TEMPRANILLO 2 of the Light Signaling pathway) found in Scaffold 00930 (query sequence starts at base 63096) | + | <br/>AT1G68840 (ATRAV2, EDF2, ETHYLENE RESPONSE DNA BINDING FACTOR 2, RAP2.8, RAV2, RELATED TO ABI3/VP1 2, RELATED TO AP2 8, TEM2, TEMPRANILLO 2 of the Light Signaling pathway) found in Scaffold 00930 (query sequence starts at base 63096) |
1) | 1) | ||
For Primer ATTATGTGGAAAGCAAACCGAC | For Primer ATTATGTGGAAAGCAAACCGAC | ||
| − | Rev Primer TAGTTTGTGGCAAATGAGGATG | + | - Rev Primer TAGTTTGTGGCAAATGAGGATG |
| − | Repeats (ct) x11 PCR product = 189 bp start at base 62365 | + | - Repeats (ct) x11 - PCR product = 189 bp - start at base 62365 |
2) | 2) | ||
For Primer CCATGTGAAAAGGGATAAGCAT | For Primer CCATGTGAAAAGGGATAAGCAT | ||
| − | Rev Primer TTGTTTGGTGCTCCTCTACTCA | + | - Rev Primer TTGTTTGGTGCTCCTCTACTCA |
| − | Repeats (gat) x9 PCR product = 158 bp start at base 57313 | + | - Repeats (gat) x9 - PCR product = 158 bp - start at base 57313 |
3) | 3) | ||
For Primer NGTTGCATGCTAATCTCTTTGG | For Primer NGTTGCATGCTAATCTCTTTGG | ||
| − | Rev Primer ATGAAATGTGGGACTCTGTTCC | + | - Rev Primer ATGAAATGTGGGACTCTGTTCC |
| − | Repeats (ta) x11 PCR product = 214 bp start at base 54197 | + | - Repeats (ta) x11 - PCR product = 214 bp - start at base 54197 |
| − | AT5G08330 (CCA1 HIKING EXPEDITION, CHE, TRANSCRIPTION FACTOR TCP21, TCP21 of the Light Signaling pathway) found in Scaffold 00993 (query sequence starts at base 294) | + | <br/>AT5G08330 (CCA1 HIKING EXPEDITION, CHE, TRANSCRIPTION FACTOR TCP21, TCP21 of the Light Signaling pathway) found in Scaffold 00993 (query sequence starts at base 294) |
1) | 1) | ||
For Primer ATCCACTCGATTGAAGCAAGAT | For Primer ATCCACTCGATTGAAGCAAGAT | ||
| − | Rev Primer GGTTTCTTCACAGTTAGGGCTC | + | - Rev Primer GGTTTCTTCACAGTTAGGGCTC |
| − | Repeats (aac) x7 PCR product = 190 bp start at base 261 | + | - Repeats (aac) x7 - PCR product = 190 bp - start at base 261 |
2) | 2) | ||
For Primer CCTCTTGCTGGTAAGCACTCTT | For Primer CCTCTTGCTGGTAAGCACTCTT | ||
| − | Rev Primer ATGGTCTAGAACCAAACATGGG | + | - Rev Primer ATGGTCTAGAACCAAACATGGG |
| − | Repeats (gt) x11 PCR product = 208 bp start at base 13096 | + | - Repeats (gt) x11 - PCR product = 208 bp - start at base 13096 |
3) | 3) | ||
For Primer ACATGTTCCAAACAAACCCTTC | For Primer ACATGTTCCAAACAAACCCTTC | ||
| − | Rev Primer GCGTCTCCTCTCTCTCTCTCTC | + | - Rev Primer GCGTCTCCTCTCTCTCTCTCTC |
| − | Repeats (ag) x12 PCR product = 292 bp start at base 18424 | + | - Repeats (ag) x12 - PCR product = 292 bp - start at base 18424 |
| − | AT4G11110 (SPA1-RELATED 2, SPA2 of the Light Signaling pathway) found in Scaffold 01034 (query sequence starts at base 19205) | + | <BR/>AT4G11110 (SPA1-RELATED 2, SPA2 of the Light Signaling pathway) found in Scaffold 01034 (query sequence starts at base 19205) |
1) | 1) | ||
For Primer CGGCCTAAAACACTTATCGAAC | For Primer CGGCCTAAAACACTTATCGAAC | ||
| − | Rev Primer AACGGGCTTCCTCTACATACAA | + | - Rev Primer AACGGGCTTCCTCTACATACAA |
| − | Repeats (ag) x9 PCR product = 222 bp start at base 14166 | + | - Repeats (ag) x9 - PCR product = 222 bp - start at base 14166 |
2) | 2) | ||
For Primer CACGCCTCTCTCTCTCTCTCTC | For Primer CACGCCTCTCTCTCTCTCTCTC | ||
| − | Rev Primer CTACAAAAGTCTCCAAACCCCA | + | - Rev Primer CTACAAAAGTCTCCAAACCCCA |
| − | Repeats (ct) x20 PCR product = 180 bp start at base 3833 | + | - Repeats (ct) x20 - PCR product = 180 bp - start at base 3833 |
3) | 3) | ||
For Primer ACTTCTTGTTTTGAGGGGGAAT | For Primer ACTTCTTGTTTTGAGGGGGAAT | ||
| − | Rev Primer TAGGTAACTCATGCTCTGGGGT | + | - Rev Primer TAGGTAACTCATGCTCTGGGGT |
| − | Repeats (ct) x11 PCR product = 157 bp start at base 34735 | + | - Repeats (ct) x11 - PCR product = 157 bp - start at base 34735 |
| − | AT2G47700 (RED AND FAR-RED INSENSITIVE 2, RFI2 of the Light Signaling pathway) found in Scaffold 01059 (query sequence starts at base 96557) | + | <BR/>AT2G47700 (RED AND FAR-RED INSENSITIVE 2, RFI2 of the Light Signaling pathway) found in Scaffold 01059 (query sequence starts at base 96557) |
1) | 1) | ||
For Primer TAACAGGAGCACAATGATCCAA | For Primer TAACAGGAGCACAATGATCCAA | ||
| − | Rev Primer TCTCTCTCCCTCTCTCGCTCTA | + | - Rev Primer TCTCTCTCCCTCTCTCGCTCTA |
| − | Repeats (ga) x8 PCR product = 247 bp start at base 73538 | + | - Repeats (ga) x8 - PCR product = 247 bp - start at base 73538 |
2) | 2) | ||
For Primer ACACATGGCTTGATCTACTTCG | For Primer ACACATGGCTTGATCTACTTCG | ||
| − | Rev Primer GCGAGGTAAGAGAGAAGGACAA | + | - Rev Primer GCGAGGTAAGAGAGAAGGACAA |
| − | Repeats (tc) x28 PCR product = 300 bp start at base 62959 | + | - Repeats (tc) x28 - PCR product = 300 bp - start at base 62959 |
3) | 3) | ||
For Primer CCTCTCCAGTATTACTCACCCG | For Primer CCTCTCCAGTATTACTCACCCG | ||
| − | Rev Primer TAAGAAAGGAACGAACCTTGGA | + | - Rev Primer TAAGAAAGGAACGAACCTTGGA |
| − | Repeats (tc) x8 PCR product = 294 bp start at base 54451 | + | - Repeats (tc) x8 - PCR product = 294 bp - start at base 54451 |
| − | AT5G35840 (PHYC, PHYTOCHROME C of the Light Signaling pathway) found in Scaffold 01070 (query sequence starts at base 75395) | + | <br/>AT5G35840 (PHYC, PHYTOCHROME C of the Light Signaling pathway) found in Scaffold 01070 (query sequence starts at base 75395) |
1) | 1) | ||
For Primer TGAACGGGTCCAGTCTATTCTT | For Primer TGAACGGGTCCAGTCTATTCTT | ||
| − | Rev Primer TTTGGTGTCTCTTCTGGGTTTT | + | - Rev Primer TTTGGTGTCTCTTCTGGGTTTT |
| − | Repeats (ag) x14 PCR product = 182 bp start at base 56787 | + | - Repeats (ag) x14 - PCR product = 182 bp - start at base 56787 |
2) | 2) | ||
For Primer AATCCCATGTCGACACCTATTC | For Primer AATCCCATGTCGACACCTATTC | ||
| − | Rev Primer TGCCTTCAAATCAGACTAAGCA | + | - Rev Primer TGCCTTCAAATCAGACTAAGCA |
| − | Repeats (gca) x6 PCR product = 186 bp start at base 97674 | + | - Repeats (gca) x6 - PCR product = 186 bp - start at base 97674 |
3) | 3) | ||
For Primer GGGAGGAAATCCACTAAAAAGG | For Primer GGGAGGAAATCCACTAAAAAGG | ||
| − | Rev Primer CCTGTTGGTGGTCTTGCATATT | + | - Rev Primer CCTGTTGGTGGTCTTGCATATT |
| − | Repeats (tg) x17 PCR product = 298 bp start at base 16459 | + | - Repeats (tg) x17 - PCR product = 298 bp - start at base 16459 |
| − | AT5G62430 (CDF1, CYCLING DOF FACTOR 1 of the Light Signaling pathway) found in Scaffold 01102 (query sequence starts at base 51435) – MIKE N | + | <br/>AT5G62430 (CDF1, CYCLING DOF FACTOR 1 of the Light Signaling pathway) found in Scaffold 01102 (query sequence starts at base 51435) – MIKE N |
1) | 1) | ||
For Primer AGGATGAGTGAAAGAGCGTACC | For Primer AGGATGAGTGAAAGAGCGTACC | ||
| − | Rev Primer CCAGATTTTTCAGAGAATTGGC | + | - Rev Primer CCAGATTTTTCAGAGAATTGGC |
| − | Repeats (ag) x12 PCR product = 253 bp start at base 45392 | + | - Repeats (ag) x12 - PCR product = 253 bp - start at base 45392 |
2) | 2) | ||
For Primer TTCTCCATCTTTAACGTCAGCA | For Primer TTCTCCATCTTTAACGTCAGCA | ||
| − | Rev Primer GATTGCACGTACTTCACCAAGA | + | - Rev Primer GATTGCACGTACTTCACCAAGA |
| − | Repeats (ga) x32 PCR product = 260 bp start at base 78317 | + | - Repeats (ga) x32 - PCR product = 260 bp - start at base 78317 |
3) | 3) | ||
For Primer GTGTGTAATGGGACAAGCCTTT | For Primer GTGTGTAATGGGACAAGCCTTT | ||
| − | Rev Primer GCTAAAATAGGCCCAGTAGGCT | + | - Rev Primer GCTAAAATAGGCCCAGTAGGCT |
| − | Repeats (ac) x11 PCR product = 289 bp start at base 81642 | + | - Repeats (ac) x11 - PCR product = 289 bp - start at base 81642 |
| − | AT3G46640 (LUX, LUX ARRHYTHMO, PCL1, PHYTOCLOCK 1 of the Light Signaling pathway) found in Scaffold 01150 (query sequence starts at base 80272) | + | <BR/>AT3G46640 (LUX, LUX ARRHYTHMO, PCL1, PHYTOCLOCK 1 of the Light Signaling pathway) found in Scaffold 01150 (query sequence starts at base 80272) |
1) | 1) | ||
For Primer CCTTGTCTGCACACTTAGCATC | For Primer CCTTGTCTGCACACTTAGCATC | ||
| − | Rev Primer AAATTGAGTGAGATAAGCCCCA | + | - Rev Primer AAATTGAGTGAGATAAGCCCCA |
| − | Repeats (gaa) x8 PCR product = 197 bp start at base 72111 | + | - Repeats (gaa) x8 - PCR product = 197 bp - start at base 72111 |
2) | 2) | ||
For Primer ACATATGGTTTCTATGTGCCCC | For Primer ACATATGGTTTCTATGTGCCCC | ||
| − | Rev Primer TTGTTCGATTACAGGAGCAGAA | + | - Rev Primer TTGTTCGATTACAGGAGCAGAA |
| − | Repeats (ga) x9 PCR product = 277 bp start at base 64622 | + | - Repeats (ga) x9 - PCR product = 277 bp - start at base 64622 |
3) | 3) | ||
For Primer CTTTCAGCAACTTCTCCTTCGT | For Primer CTTTCAGCAACTTCTCCTTCGT | ||
| − | Rev Primer TGAGATCCCAACCACAATGTTA | + | - Rev Primer TGAGATCCCAACCACAATGTTA |
| − | Repeats (tc) x18 PCR product = 242 bp start at base 30081 | + | - Repeats (tc) x18 - PCR product = 242 bp - start at base 30081 |
| − | AT2G22540 (AGAMOUS-LIKE 22, AGL22, SHORT VEGETATIVE PHASE, SVP of the Ambient Temperature and Vernalization pathways) found in Scaffold 01187 (query sequence starts at base 47701) | + | <BR/>AT2G22540 (AGAMOUS-LIKE 22, AGL22, SHORT VEGETATIVE PHASE, SVP of the Ambient Temperature and Vernalization pathways) found in Scaffold 01187 (query sequence starts at base 47701) |
| − | AT4G24540 (AGAMOUS-LIKE 24, AGL24 of the Vernalization pathway) found in Scaffold 01187 (query sequence starts at base 47701) | + | <BR/>AT4G24540 (AGAMOUS-LIKE 24, AGL24 of the Vernalization pathway) found in Scaffold 01187 (query sequence starts at base 47701) |
1) | 1) | ||
For Primer CAAATGGTGATAGCAAACATGG | For Primer CAAATGGTGATAGCAAACATGG | ||
| − | Rev Primer CTCAAAGAAAATTCCCAAGACG | + | - Rev Primer CTCAAAGAAAATTCCCAAGACG |
| − | Repeats (tta) x7 PCR product = 274 bp start at base 57880 | + | - Repeats (tta) x7 - PCR product = 274 bp - start at base 57880 |
2) | 2) | ||
For Primer GCTACTGTTCTCGTCTCCTCGT | For Primer GCTACTGTTCTCGTCTCCTCGT | ||
| − | Rev Primer TCAATAGAACCTTCCACCGACT | + | - Rev Primer TCAATAGAACCTTCCACCGACT |
| − | Repeats (ct) x13 PCR product = 116 bp start at base 78977 | + | - Repeats (ct) x13 - PCR product = 116 bp - start at base 78977 |
3) | 3) | ||
For Primer AATGTTTTGTGTCTCCCAATCC | For Primer AATGTTTTGTGTCTCCCAATCC | ||
| − | Rev Primer GGCACAACGCTAGTTGATAAAG | + | - Rev Primer GGCACAACGCTAGTTGATAAAG |
| − | Repeats (ga) x12 PCR product = 275 bp start at base 95120 | + | - Repeats (ga) x12 - PCR product = 275 bp - start at base 95120 |
| − | AT4G34530 (CIB1, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1 of the Light Signaling pathway) found in Scaffold 01322 (query sequence starts at base 82955) | + | <BR/>AT4G34530 (CIB1, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1 of the Light Signaling pathway) found in Scaffold 01322 (query sequence starts at base 82955) |
1) | 1) | ||
For Primer ACCTTTTCCCGGAACTATGATT | For Primer ACCTTTTCCCGGAACTATGATT | ||
| − | Rev Primer GGTTAAAACCGTAAACGACAGC | + | - Rev Primer GGTTAAAACCGTAAACGACAGC |
| − | Repeats (gt) x20 PCR product = 243 bp start at base 88042 | + | - Repeats (gt) x20 - PCR product = 243 bp - start at base 88042 |
2) | 2) | ||
For Primer AAGATGGAGATAAGCAGGTCCC | For Primer AAGATGGAGATAAGCAGGTCCC | ||
| − | Rev Primer TTCTAGTCTTAGCGTGGATGGC | + | - Rev Primer TTCTAGTCTTAGCGTGGATGGC |
| − | Repeats (ag) x11 PCR product = 290 bp start at base 75518 | + | - Repeats (ag) x11 - PCR product = 290 bp - start at base 75518 |
3) | 3) | ||
For Primer TCAAAGAGCTTGTTCTGCTGTG | For Primer TCAAAGAGCTTGTTCTGCTGTG | ||
| − | Rev Primer CCCTCAACCCTCTTCTTCTTTT | + | - Rev Primer CCCTCAACCCTCTTCTTCTTTT |
| − | Repeats (ga) x9 PCR product = 143 bp start at base 61574 | + | - Repeats (ga) x9 - PCR product = 143 bp - start at base 61574 |
| − | AT1G14920 (GAI, GIBBERELLIC ACID INSENSITIVE, RESTORATION ON GROWTH ON AMMONIA 2, RGA2 of the Gibberellin pathway) found in Scaffold 01360 (query sequence starts at base 51382) | + | <br/>AT1G14920 (GAI, GIBBERELLIC ACID INSENSITIVE, RESTORATION ON GROWTH ON AMMONIA 2, RGA2 of the Gibberellin pathway) found in Scaffold 01360 (query sequence starts at base 51382) |
| − | AT2G01570 (REPRESSOR OF GA, REPRESSOR OF GA1-3 1, RGA, RGA1 of the Gibberellin pathway) found in Scaffold 01360 (query sequence starts at base 51382) | + | <BR/>AT2G01570 (REPRESSOR OF GA, REPRESSOR OF GA1-3 1, RGA, RGA1 of the Gibberellin pathway) found in Scaffold 01360 (query sequence starts at base 51382) |
1) | 1) | ||
For Primer CCCTCTCCCTCATTCTAACCTT | For Primer CCCTCTCCCTCATTCTAACCTT | ||
| − | Rev Primer GTGCCTTAGGGTACCAAATCAA | + | - Rev Primer GTGCCTTAGGGTACCAAATCAA |
| − | Repeats (tc) x11 PCR product = 252 bp start at base 68499 | + | - Repeats (tc) x11 - PCR product = 252 bp - start at base 68499 |
2) | 2) | ||
For Primer ACCCACTTTCAGAGAAATTCCA | For Primer ACCCACTTTCAGAGAAATTCCA | ||
| − | Rev Primer ACGGAGTCTTTATCGGTTGAAA | + | - Rev Primer ACGGAGTCTTTATCGGTTGAAA |
| − | Repeats (ct) x18 PCR product = 267 bp start at base 39593 | + | - Repeats (ct) x18 - PCR product = 267 bp - start at base 39593 |
3) | 3) | ||
For Primer TTCTAGTACCGCGCTTTTTCTC | For Primer TTCTAGTACCGCGCTTTTTCTC | ||
| − | Rev Primer ATCAACAAAGGGTTTCAGGCTA | + | - Rev Primer ATCAACAAAGGGTTTCAGGCTA |
| − | Repeats (tc) x17 PCR product = 286 bp start at base 75242 | + | - Repeats (tc) x17 - PCR product = 286 bp - start at base 75242 |
| − | AT3G04610 (FLK, FLOWERING LOCUS KH DOMAIN of the Autonomous pathway) found in Scaffold 01384 (query sequence starts at base 28309) | + | <BR/>AT3G04610 (FLK, FLOWERING LOCUS KH DOMAIN of the Autonomous pathway) found in Scaffold 01384 (query sequence starts at base 28309) |
1) | 1) | ||
For Primer GCAAAAATGGGTAGGTCTTCTG | For Primer GCAAAAATGGGTAGGTCTTCTG | ||
| − | Rev Primer CCACGTGTTACATTTGTCTTGG | + | - Rev Primer CCACGTGTTACATTTGTCTTGG |
| − | Repeats (ag) x9 PCR product = 226 bp start at base 27550 | + | - Repeats (ag) x9 - PCR product = 226 bp - start at base 27550 |
2) | 2) | ||
For Primer GGAATTGGGATGAAATGAGAAG | For Primer GGAATTGGGATGAAATGAGAAG | ||
| − | Rev Primer CGGAACAATTATCTTCCTCGTC | + | - Rev Primer CGGAACAATTATCTTCCTCGTC |
| − | Repeats (ta) x10 PCR product = 258 bp start at base 46362 | + | - Repeats (ta) x10 - PCR product = 258 bp - start at base 46362 |
3) | 3) | ||
For Primer CGAGTAATATTTCCGAAGCACA | For Primer CGAGTAATATTTCCGAAGCACA | ||
| − | Rev Primer ATTAAAAGCGTGAGAGGCAGAG | + | - Rev Primer ATTAAAAGCGTGAGAGGCAGAG |
| − | Repeats (aat) x10 PCR product = 266 bp start at base 49252 | + | - Repeats (aat) x10 - PCR product = 266 bp - start at base 49252 |
| − | AT3G20740 (FERTILIZATION-INDEPENDENT ENDOSPERM, FERTILIZATION-INDEPENDENT ENDOSPERM 1, FIE, FIE1, FIS3 of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 01670 (query sequence starts at base 9836) | + | <BR/>AT3G20740 (FERTILIZATION-INDEPENDENT ENDOSPERM, FERTILIZATION-INDEPENDENT ENDOSPERM 1, FIE, FIE1, FIS3 of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 01670 (query sequence starts at base 9836) |
1) | 1) | ||
For Primer CCTCTCCCTCAATTCTCTCTCA | For Primer CCTCTCCCTCAATTCTCTCTCA | ||
| − | Rev Primer CTTGTTCTCGTTGTCGAGTTTG | + | - Rev Primer CTTGTTCTCGTTGTCGAGTTTG |
| − | Repeats (cgg) x5 PCR product = 287 bp start at base 4993 | + | - Repeats (cgg) x5 - PCR product = 287 bp - start at base 4993 |
2) | 2) | ||
For Primer GCGATGCAGAAGTTGTTGATAG | For Primer GCGATGCAGAAGTTGTTGATAG | ||
| − | Rev Primer ACACCTTACCGATTCAAGTGCT | + | - Rev Primer ACACCTTACCGATTCAAGTGCT |
| − | Repeats (ta) x6 PCR product = 223 bp start at base 31113 | + | - Repeats (ta) x6 - PCR product = 223 bp - start at base 31113 |
3) | 3) | ||
For Primer GCAATTTCATCTTCGCTCTCTT | For Primer GCAATTTCATCTTCGCTCTCTT | ||
| − | Rev Primer GAGCGTTTGTATGGAGTGAATG | + | - Rev Primer GAGCGTTTGTATGGAGTGAATG |
| − | Repeats (ct) x5 PCR product = 298 bp start at base 59874 | + | - Repeats (ct) x5 - PCR product = 298 bp - start at base 59874 |
| − | AT2G43410 (FPA of the Autonomous pathway) found in Scaffold 01689 (query sequence starts at base 47663) | + | <BR/>AT2G43410 (FPA of the Autonomous pathway) found in Scaffold 01689 (query sequence starts at base 47663) |
1) | 1) | ||
For Primer AGAATTTAAGGGGGTTTGGTGT | For Primer AGAATTTAAGGGGGTTTGGTGT | ||
| − | Rev Primer CGTGTAAACTGTAAAGTAGTTGGG | + | - Rev Primer CGTGTAAACTGTAAAGTAGTTGGG |
| − | Repeats (ac) x10 PCR product = 111 bp start at base 45530 | + | - Repeats (ac) x10 - PCR product = 111 bp - start at base 45530 |
2) | 2) | ||
For Primer TACGGCGAAGACCAGATTTATT | For Primer TACGGCGAAGACCAGATTTATT | ||
| − | Rev Primer AAAAACTTGGGGTCTGTAGGGT | + | - Rev Primer AAAAACTTGGGGTCTGTAGGGT |
| − | Repeats (ct) x9 PCR product = 135 bp start at base 25148 | + | - Repeats (ct) x9 - PCR product = 135 bp - start at base 25148 |
3) | 3) | ||
For Primer TATGGGCCAGCGTTTACTTACT | For Primer TATGGGCCAGCGTTTACTTACT | ||
| − | Rev Primer CAGTTCCTGCTTGTCAAGTGTC | + | - Rev Primer CAGTTCCTGCTTGTCAAGTGTC |
| − | Repeats (gt) x14 PCR product = 255 bp start at base 10708 | + | - Repeats (gt) x14 - PCR product = 255 bp - start at base 10708 |
| − | AT3G02380 (ATCOL2, B-BOX DOMAIN PROTEIN 3, BBX3, COL2, CONSTANS-LIKE 2 of the Light Signaling pathway) found in Scaffold 01843 (query sequence starts at base 40767) | + | <BR/>AT3G02380 (ATCOL2, B-BOX DOMAIN PROTEIN 3, BBX3, COL2, CONSTANS-LIKE 2 of the Light Signaling pathway) found in Scaffold 01843 (query sequence starts at base 40767) |
| − | AT5G15840 (B-BOX DOMAIN PROTEIN 1, BBX1, CO, CONSTANS, FG of the Light Signaling pathway) found in Scaffold 01843 (query sequence starts at base 40767) | + | <br/>AT5G15840 (B-BOX DOMAIN PROTEIN 1, BBX1, CO, CONSTANS, FG of the Light Signaling pathway) found in Scaffold 01843 (query sequence starts at base 40767) |
| − | AT5G15850 (ATCOL1, B-BOX DOMAIN PROTEIN 2, BBX2, COL1, CONSTANS-LIKE 1 of the Light Signaling pathway) found in Scaffold 01843 (query sequence starts at base 40767) – MIKE N | + | <br/>AT5G15850 (ATCOL1, B-BOX DOMAIN PROTEIN 2, BBX2, COL1, CONSTANS-LIKE 1 of the Light Signaling pathway) found in Scaffold 01843 (query sequence starts at base 40767) – MIKE N |
1) | 1) | ||
For Primer GAAACAGATGGCATGGTGAGTA | For Primer GAAACAGATGGCATGGTGAGTA | ||
| − | Rev Primer CTCCAAAACCCTATGAAAGTGC | + | - Rev Primer CTCCAAAACCCTATGAAAGTGC |
| − | Repeats (tc) x11 PCR product = 275 bp start at base 48319 | + | - Repeats (tc) x11 - PCR product = 275 bp - start at base 48319 |
2) | 2) | ||
For Primer GTCATCCTCGAAGAAAGACACC | For Primer GTCATCCTCGAAGAAAGACACC | ||
| − | Rev Primer TCGACTGGAATTGTCTCCCTAT | + | - Rev Primer TCGACTGGAATTGTCTCCCTAT |
| − | Repeats (ct) x7 PCR product = 287 bp start at base 48872 | + | - Repeats (ct) x7 - PCR product = 287 bp - start at base 48872 |
3) | 3) | ||
For Primer AGGGAAGTAGCAGCAAAGACAT | For Primer AGGGAAGTAGCAGCAAAGACAT | ||
| − | Rev Primer AGAACCCTGATGAGTTGAGGAA | + | - Rev Primer AGAACCCTGATGAGTTGAGGAA |
| − | Repeats (ca) x11 PCR product = 133 bp start at base 18196 | + | - Repeats (ca) x11 - PCR product = 133 bp - start at base 18196 |
| − | AT5G60100 (APRR3, PRR3, PSEUDO-RESPONSE REGULATOR 3 of the Light Signaling pathway) found in Scaffold 02075 (query sequence starts at base 14139) | + | <br/>AT5G60100 (APRR3, PRR3, PSEUDO-RESPONSE REGULATOR 3 of the Light Signaling pathway) found in Scaffold 02075 (query sequence starts at base 14139) |
1) | 1) | ||
For Primer GCATGTTAAAAGGTGCTGTTGA | For Primer GCATGTTAAAAGGTGCTGTTGA | ||
| − | Rev Primer ACTTCGACTTTCTCTTGTTCCG | + | - Rev Primer ACTTCGACTTTCTCTTGTTCCG |
| − | Repeats (ct) x7 PCR product = 238 bp start at base 14277 | + | - Repeats (ct) x7 - PCR product = 238 bp - start at base 14277 |
2) | 2) | ||
For Primer GATCACCATTTCACAAGCTGAG | For Primer GATCACCATTTCACAAGCTGAG | ||
| − | Rev Primer ATACATTTCAGATATGCGCGTG | + | - Rev Primer ATACATTTCAGATATGCGCGTG |
| − | Repeats (ga) x7 PCR product = 263 bp start at base 14887 | + | - Repeats (ga) x7 - PCR product = 263 bp - start at base 14887 |
3) | 3) | ||
For Primer CCTTTCTCTTATTCTCTCGCCA | For Primer CCTTTCTCTTATTCTCTCGCCA | ||
| − | Rev Primer AGCCATAGAGTGAGGACGGTTA | + | - Rev Primer AGCCATAGAGTGAGGACGGTTA |
| − | Repeats (ct) x8 PCR product = 293 bp start at base 20948 | + | - Repeats (ct) x8 - PCR product = 293 bp - start at base 20948 |
| − | AT1G20330 (COTYLEDON VASCULAR PATTERN 1, CVP1, FRILL1, FRL1, SMT2, STEROL METHYLTRANSFERASE 2 of the Vernalization pathway) found in Scaffold 02142 (query sequence starts at base 24743) | + | <br/>AT1G20330 (COTYLEDON VASCULAR PATTERN 1, CVP1, FRILL1, FRL1, SMT2, STEROL METHYLTRANSFERASE 2 of the Vernalization pathway) found in Scaffold 02142 (query sequence starts at base 24743) |
1) | 1) | ||
For Primer TATCAGAAGACGTCCCAGAGGT | For Primer TATCAGAAGACGTCCCAGAGGT | ||
| − | Rev Primer GGTCGAGATGCACAATTAGACA | + | - Rev Primer GGTCGAGATGCACAATTAGACA |
| − | Repeats (ct) x10 PCR product = 182 bp start at base 35782 | + | - Repeats (ct) x10 - PCR product = 182 bp - start at base 35782 |
2) | 2) | ||
For Primer CGTTTTGGGTGAGTACAAGTGA | For Primer CGTTTTGGGTGAGTACAAGTGA | ||
| − | Rev Primer CCACATTCCCGATCTTATTGTT | + | - Rev Primer CCACATTCCCGATCTTATTGTT |
| − | Repeats (tc) x6 PCR product = 235 bp start at base 23016 | + | - Repeats (tc) x6 - PCR product = 235 bp - start at base 23016 |
3) | 3) | ||
For Primer CGAATCTTGTTGTCGTATTGGA | For Primer CGAATCTTGTTGTCGTATTGGA | ||
| − | Rev Primer ATCAGCACATTCTCAGAAAGCA | + | - Rev Primer ATCAGCACATTCTCAGAAAGCA |
| − | Repeats (ct) x5 PCR product = 252 bp start at base 22648 | + | - Repeats (ct) x5 - PCR product = 252 bp - start at base 22648 |
| − | AT1G09570 (ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A of the Light Signaling pathway) found in Scaffold 03861 (query sequence starts at base 3771) – MIKE N | + | <br/>AT1G09570 (ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A of the Light Signaling pathway) found in Scaffold 03861 (query sequence starts at base 3771) – MIKE N |
No adequate SSRs could be found | No adequate SSRs could be found | ||
| − | AT5G65060 (AGAMOUS-LIKE 70, AGL70, FCL3, MADS AFFECTING FLOWERING 3, MAF3 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 639) | + | <br/>AT5G65060 (AGAMOUS-LIKE 70, AGL70, FCL3, MADS AFFECTING FLOWERING 3, MAF3 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 639) |
| − | AT5G65080 (AGAMOUS-LIKE 68, AGL68, MADS AFFECTING FLOWERING 5, MAF5 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 699) | + | <br/>AT5G65080 (AGAMOUS-LIKE 68, AGL68, MADS AFFECTING FLOWERING 5, MAF5 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 699) |
| − | AT5G10140 (AGAMOUS-LIKE 25, AGL25, FLC, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 708) | + | <br/>AT5G10140 (AGAMOUS-LIKE 25, AGL25, FLC, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 708) |
| − | AT5G65050 (AGAMOUS-LIKE 31, AGL31, MADS AFFECTING FLOWERING 2, MAF2 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 723) | + | <br/>AT5G65050 (AGAMOUS-LIKE 31, AGL31, MADS AFFECTING FLOWERING 2, MAF2 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 723) |
| − | AT5G65070 (AGAMOUS-LIKE 69, AGL69, FCL4, MADS AFFECTING FLOWERING 4, MAF4 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 723) | + | <br/>AT5G65070 (AGAMOUS-LIKE 69, AGL69, FCL4, MADS AFFECTING FLOWERING 4, MAF4 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 723) |
| − | AT1G77080 (AGAMOUS-LIKE 27, AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 744) | + | <br/>AT1G77080 (AGAMOUS-LIKE 27, AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 744) |
No adequate SSRs could be found | No adequate SSRs could be found | ||
| − | AT5G24930 (ATCOL4, B-BOX DOMAIN PROTEIN 5, BBX5, COL4, CONSTANS-LIKE 4 of the Light Signaling pathway) found in Scaffold 11225 (query sequence starts at base 2816) | + | <br/>AT5G24930 (ATCOL4, B-BOX DOMAIN PROTEIN 5, BBX5, COL4, CONSTANS-LIKE 4 of the Light Signaling pathway) found in Scaffold 11225 (query sequence starts at base 2816) |
| − | AT5G57660 (ATCOL5, B-BOX DOMAIN PROTEIN 6, BBX6, COL5, CONSTANS-LIKE 5 of the Light Signaling pathway) found in Scaffold 11225 (query sequence starts at base 2816) | + | <br/>AT5G57660 (ATCOL5, B-BOX DOMAIN PROTEIN 6, BBX6, COL5, CONSTANS-LIKE 5 of the Light Signaling pathway) found in Scaffold 11225 (query sequence starts at base 2816) |
1) | 1) | ||
For Primer CTCCGTTCCAAAATAAGTGTCC | For Primer CTCCGTTCCAAAATAAGTGTCC | ||
| − | Rev Primer ACGTACTACTCCCTCCATTCCA | + | - Rev Primer ACGTACTACTCCCTCCATTCCA |
| − | Repeats (ag) x5 PCR product = 240 bp start at base 442 | + | - Repeats (ag) x5 - PCR product = 240 bp - start at base 442 |
Only one adequate SSR could be found | Only one adequate SSR could be found | ||
Latest revision as of 01:50, 11 April 2013
All SSR results from the Time of bloom experimentation are below.
AT5G24470 (APRR5, PRR5, PSEUDO-RESPONSE REGULATOR 5 of the Light Signaling pathway) found in Scaffold 00001 (query sequence starts at base 322798)
AT2G46790 (APRR9, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9, PRR9, PSEUDO-RESPONSE REGULATOR 9, TL1, TOC1-LIKE PROTEIN 1 of the Light Signaling pathway) found in Scaffold 00001 (query sequence starts at base 322801)
1) For Primer GTCTTCTTGGCTTTCTCTTCCA - Rev Primer CTTCCACCGCCACTAATATCTC - Repeats (tc) x11 - PCR product = 157 bp - start at base 324273
2) For Primer CGCCTTTTAATTCCTAGTGGTG - Rev Primer TGTTGCCTTATTGTGAGCCTAA - Repeats (tc) x15 - PCR product = 153 bp - start at base 324766
3) For Primer AGCCAATAACCTTTCCTGTTGA - Rev Primer GTGCCTATCAGCCACTCTTTTT - Repeats (tc) x9 - PCR product = 238 bp - start at base 314842
AT4G02560 (LD, LUMINIDEPENDENS of the Autonomous pathway) found in Scaffold 00002 (query sequence starts at base 158601)
1) For Primer ACTGGATCAGTCTCCGACTCTC - Rev Primer GAGTTACGGCTAGGGTTAGGGT - Repeats (tc) x11 - PCR product = 204 bp - start at base 155393
2) For Primer TTTCACTTTTAGCCACCACCTT - Rev Primer CGAATCCATCAGCTAAAAGGAC - Repeats (tc) x11 - PCR product = 190 bp - start at base 166784
3) For Primer GTATGCTGCTGCAAACAATGAT - Rev Primer CTTGGAGAAGTGACAGAAAGCA - Repeats (tc) x44 - PCR product = 236 bp - start at base 341579
AT4G26000 (PEP, PEPPER of the Vernalization pathway) found in Scaffold 00021 (query sequence starts at base 157278)
1) For Primer CACAAGGATGCTCAAACCATAA - Rev Primer AAATGGTTGGATACGAGCTGTT - Repeats (at) x8 - PCR product = 280 bp - start at base 148634
2) For Primer ACGAGGAGTGAGAGAGAAGTGG - Rev Primer CAGACACAAATTGGAGAGCAAG - Repeats (tc) x12 - PCR product = 297 bp - start at base 145700
3) For Primer CTGGGACCAGATAATTCGAAAG - Rev Primer TGACACATGTTGATTGGTCTGA - Repeats (ga) x10 - PCR product = 219 bp - start at base 116906
AT2G18880 (VEL2, VERNALIZATION5/VIN3-LIKE 2, VIL3, VIN3-LIKE 3 of the Autonomous pathway) found in Scaffold 00026 (query sequence starts at base 369396)
AT5G57380 (VERNALIZATION INSENSITIVE 3, VIN3 of the Autonomous and Vernalization pathways) found in Scaffold 00026 (query sequence starts at base 369405)
AT4G30200 (VEL1, VERNALIZATION5/VIN3-LIKE 1, VIL2, VIN3-LIKE 2 of the Autonomous and Vernalization pathways) found in Scaffold 00026 (query sequence starts at base 369417)
1) For Primer CGAGTCACCTATCACCAGATCA - Rev Primer TCCTCCAAACCTTACAAAAGGA - Repeats (ta) x10 - PCR product = 244 bp - start at base 362422
2) For Primer AAAAAGGAAGAGGAAGAATCGG - Rev Primer AGCCGACGACGACTCTATCTAA - Repeats (ag) x19 - PCR product = 260 bp - start at base 362158
3) For Primer CTGCTACTGTCACCATCAGAGG - Rev Primer TCTTCCTCTCGTCTCATATGCC - Repeats (ga) x11 - PCR product = 297 bp - start at base 344594
AT2G18915 (ADAGIO 2, ADO2, LKP2, LOV KELCH PROTEIN 2 of the Light Signaling pathway) found in Scaffold 00026 (query sequence starts at base 445582)
AT5G57360 (ADAGIO 1, ADO1, FKF1-LIKE PROTEIN 2, FKL2, LKP1, LOV KELCH PROTEIN 1, ZEITLUPE, ZTL of the Light Signaling pathway) found in Scaffold 00026 (query sequence starts at base 445597)
1) For Primer CAGAGTAAATGGTGTGGACCAA - Rev Primer AAACCGGAACATATCCTCTTCA - Repeats (ga) x10 - PCR product = 200 bp - start at base 441957
2) For Primer GTAGATCAGGGAGAGGAGGGAT - Rev Primer GGTTTATGTGGACCGGAAATAA - Repeats (ag) x11 - PCR product = 250 bp - start at base 429600
3) For Primer TCGCTAAATTGTCTGGGAAAGT - Rev Primer CCTACTTCGGGTAGGTACCTTTA - Repeats (tc) x11 - PCR product = 235 bp - start at base 417206
AT4G00650 (FLA, FLOWERING LOCUS A, FRI, FRIGIDA of the Vernalization pathway) found in Scaffold 00039 (query sequence starts at base 216632)
1) For Primer GGCTCCTTATTTCCCACTCTTT - Rev Primer CAGCATTTCTCATAAGGGAAGG - Repeats (ag) x13 - PCR product = 229 bp - start at base 202952
2) For Primer GGGATTTTGAAGAGTGAAGACG - Rev Primer TCTTCCTCCTCCTATTCCTTCC - Repeats (tc) x10 - PCR product = 297 bp - start at base 235833
3) For Primer CCGTCCAGACAAACTTCTCTTC - Rev Primer GGATTTTAGTATGAGTTCGGCG - Repeats (ctt) x11 - PCR product = 299 bp - start at base 257937
AT1G53160 (FLORAL TRANSITION AT THE MERISTEM6, FTM6, SPL4, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4 of the Age pathway) found in Scaffold 00062 (query sequence starts at base 412489)
AT2G33810 (SPL3, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3 of the Age pathway) found in Scaffold 00062 (query sequence starts at base 412489) – CATHERINE D
1) For Primer CCAAACTCCAAGAATGAACTCC - Rev Primer GATCTACGCATTGGAAACATCA - Repeats (ga) x16 - PCR product = 288 bp - start at base 402970
2) For Primer TTTTCTGCTGAAGTGAAGTGGA - Rev Primer TCTTTGTCTGGACATTGTTTGG - Repeats (ga) x10 - PCR product = 180 bp - start at base 392786
3) For Primer AGCGGAAATTATAGGAGGGAAG - Rev Primer GGAGAGAGGAGAGAGAGACGAG - Repeats (tc) x28 - PCR product = 205 bp - start at base 423921
AT3G47500 (CDF3, CYCLING DOF FACTOR 3 of the Light Signaling pathway) found in Scaffold 00079 (query sequence starts at base 68175)
AT1G26790 (of the Light Signaling pathway) found in Scaffold 00079 (query sequence starts at base 69048) – MIKE N
1) For Primer GTTTGACATATCGAGCTTGCAC - Rev Primer TTGGTTGTAGAGGAGTGGGATT - Repeats (aat) x6 - PCR product = 292 bp - start at base 69852
2) For Primer CTCGATCCAATCCATAATCCAT - Rev Primer GATCAAAAGCGCAAGTAGGAGT - Repeats (ag) x8 - PCR product = 270 bp - start at base 71505
3) For Primer TTTGGACTAAAGCGCTACCATT - Rev Primer TACCACCACCCTTTATTTGGAG - Repeats (tcc) x9 - PCR product = 298 bp - start at base 52487
AT1G22770 (FB, GI, GIGANTEA of the Light Signaling pathway) found in Scaffold 00100 (query sequence starts at base 198329) – MIKE N
1) For Primer TTTTTGTTGACCCCAAGACTTC - Rev Primer AGCAACTTCCTCATCACAGACA - Repeats (ct) x11 - PCR product = 257 bp - start at base 196803
2) For Primer TTTCGCTCAGTTATCTCTCTCTGA - Rev Primer CCATCTTTAACTGCACAAACCA - Repeats (ta) x12 - PCR product = 225 bp - start at base 207941
3) For Primer TTTCGCTCAGTTATCTCTCTCTGA - Rev Primer CCATCTTTAACTGCACAAACCA - Repeats (ga) x11 - PCR product = 225 bp - start at base 207965
AT3G05120 (ATGID1A, GA INSENSITIVE DWARF1A, GID1A of the Gibberellin pathway) found in Scaffold 00101 (query sequence starts at base 398762)
1) For Primer CATCAATCAACGTAACCACCAT - Rev Primer ATCTGCTGTGAAGTGGAAAGGT - Repeats (gaa) x15 - PCR product = 293 bp - start at base 400426
2) For Primer CTGCTGTGCATATTACCGTTGT - Rev Primer TAATGGTGGAGAATGTGTAGCG - Repeats (ct) x11 - PCR product = 219 bp - start at base 389934
3) For Primer ATGGGTAGTTGCTCCTAATTGC - Rev Primer AACCTCACAACCGAAGAAACAT - Repeats (ct) x10 - PCR product = 279 bp - start at base 420279
AT2G33835 (FES1, FRIGIDA-ESSENTIAL 1 of the Vernalization pathway) found in Scaffold 00102 (query sequence starts at base 88264)
1) For Primer CACCCCTCCATCCATTAGTAAA - Rev Primer ATGGAAAGGACTGGTGGTAAGA - Repeats (tc) x10 - PCR product = 163 bp - start at base 113504
2) For Primer TCTACAGCATCTCTCCCACTCA - Rev Primer CCTCCAAATGATGAACACAAGA - Repeats (tc) x13 - PCR product = 250 bp - start at base 52555
3) For Primer TCTTTGATCCTTCTGGTTTGGT - Rev Primer CAGCTCTCACCTACCTCACTCA - Repeats (ga) x20 - PCR product = 286 bp - start at base 132341
AT4G16280 (FCA of the Ambient Temperature and Autonomous pathways) found in Scaffold 00104 (query sequence starts at base 120318)
1) For Primer CATTCGGATTTCTTATCCATCC - Rev Primer CTCCCTTTCACTGCTCTCTGAT - Repeats (ga) x8 - PCR product = 219 bp - start at base 137168
2) For Primer AACTCAAGCCCATTTACTCCAA - Rev Primer TGTTTGTGACTATGAACCTGGG - Repeats (tc) x10 - PCR product = 209 bp - start at base 150456
3) For Primer ATAAAACCAACACTGACCACCC - Rev Primer TAACCAAAACTCGTCGGAATCT - Repeats (ct) x8 - PCR product = 257 bp - start at base 106905
AT3G15270 (SPL5, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5 of the Age pathway) found in Scaffold 00105 (query sequence starts at base 147284)
1) For Primer TCCTCTTGCAAGGAATTGGTAT - Rev Primer CCTAGGGGGAGAATAGTGCTTT - Repeats (ga) x8 - PCR product = 118 bp - start at base 142051
2) For Primer GAGCTTTCGTACCTCCGTAAAA - Rev Primer TGACGTCGTAGAGTTGGTAGGA - Repeats (tc) x13 - PCR product = 299 bp - start at base 139430
3) For Primer TACTGTTATTCAGGGTGGCCTT - Rev Primer AGCCTAGATCGTTTTGCTTCAA - Repeats (ct) x12 - PCR product = 268 bp - start at base 123867
AT1G68050 ("FLAVIN-BINDING, KELCH REPEAT, F BOX 1", ADO3, FKF1 of the Light Signaling pathway) found in Scaffold 00110 (query sequence starts at base 120279)
1) For Primer ATTCAGATGGCGGATAAAAGAG - Rev Primer CCGCGTTTTCCAGTCTATATTC - Repeats (ag) x8 - PCR product = 242 bp - start at base 126867
2) For Primer GAGGTGAAGTGTAGATGAGGGG - Rev Primer GAGAGAGAGCGACAAGACGAAT - Repeats (ct) x14 - PCR product = 274 bp - start at base 136199
3) For Primer TTTGCGCTCTCTCTCTCTCTCT - Rev Primer GAAACTCGAAATCTTGAAACCG - Repeats (ct) x15 - PCR product = 260 bp - start at base 136377
AT5G02810 (APRR7, PRR7, PSEUDO-RESPONSE REGULATOR 7 of the Light Signaling pathway) found in Scaffold 00125 (query sequence starts at base 276518)
1) For Primer TAAGCAAGCTCGAACCCTAATC - Rev Primer CGATGCTGTTAGTTCATTCCAA - Repeats (tc) x11 - PCR product = 263 bp - start at base 278986
2) For Primer GTCATTAGAGCAACAGCAGCAG - Rev Primer TCGTCGTCGTTATCATCATCTC - Repeats (ct) x8 - PCR product = 291 bp - start at base 290380
3) For Primer CCTCAAAACTGGGGAAAATAGA - Rev Primer GGGTATAAAAGGCAAGCAGATG - Repeats (ga) x10 - PCR product = 138 bp - start at base 226349
AT1G27370 (SPL10, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 10 of the Age pathway) found in Scaffold 00127 (query sequence starts at base 165806) – CATHERINE D
1) For Primer CCAGAAATAACCTCGAAACAGC - Rev Primer CCATGATTGATCAAAACAGCTC - Repeats (ga) x12 - PCR product = 281 bp - start at base 169541
2) For Primer AGTTAAGGGAGGCCTAGGGAC - Rev Primer GGTCGCCCTTAGATAAGGATTC - Repeats (at) x11 - PCR product = 298 bp - start at base 176760
3) For Primer CAATTTTGTTCCCACCTCTCTC - Rev Primer AATGAATGTAGCAAATCCCCAC - Repeats (ac) x8 - PCR product = 211 bp - start at base 152171
AT1G66350 (RGA-LIKE 1, RGL, RGL1 of the Gibberellin pathway) found in Scaffold 00134 (query sequence starts at base 174707)
AT3G03450 (RGA-LIKE 2, RGL2 of the Gibberellin pathway) found in Scaffold 00134 (query sequence starts at base 174722)
1) For Primer TGACAAGACGTGCGATATAAGG - Rev Primer TCCTCGTCGAACATCTTTTTG - Repeats (ttc) x5 - PCR product = 250 bp - start at base 174643
2) For Primer TTCACACCAAATGGACTCTGAC - Rev Primer GAGAATAATTTTGTCCCACCCA - Repeats (tc) x9 - PCR product = 237 bp - start at base 135335
3) For Primer AGATCACAATGGGCTTCAAACT - Rev Primer AGGAGGACGTTGGAGACTGTAA - Repeats (ca) x13 - PCR product = 204 bp - start at base 116959
AT1G01060 (LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1 of the Light Signaling pathway) found in Scaffold 00140 (query sequence starts at base 234299)
AT2G46830 (ATCCA1, CCA1, CIRCADIAN CLOCK ASSOCIATED 1 of the Light Signaling pathway) found in Scaffold 00140 (query sequence starts at base 234299)
1) For Primer GAAATTACCCTCTCTGACGTGG - Rev Primer AGAAGATCCAGCTTTGAGTTGC - Repeats (tc) x10 - PCR product = 153 bp - start at base 232252
2) For Primer TTTGTTCCACTTCCCAAGTTCT - Rev Primer GGGGACCATCTTCTTTGCTATT - Repeats (ct) x8 - PCR product = 230 bp - start at base 262342
3) For Primer CTAGGCAAAGCCGCTAATTACA - Rev Primer CCCATGAGATTTCCTTTTGA - Repeats (gaa) x10 - PCR product = 203 bp - start at base 264721
AT3G12810 (CHR13, PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, PIE1, SRCAP of the Vernalization pathway) found in Scaffold 00147 (query sequence starts at base 30164)
1) For Primer GGTTGGATGCTCTGTCACAATA - Rev Primer CCTGCTGTTGTCATTCTCTTTG - Repeats (gt) x14 - PCR product = 195 bp - start at base 36897
2) For Primer GTGTGTGTGTGTGTGTGTGTGA - Rev Primer AATCCTTCGAAAGTATGGCTCA - Repeats (ag) x11 - PCR product = 179 bp - start at base 26112
3) For Primer AGCCAACTACCGTACAAAGACC - Rev Primer AATCCTTCGAAAGTATGGCTCA - Repeats (tg) x15 - PCR product = 239 bp - start at base 26082
AT5G13480 (FY of the Autonomous pathway) found in Scaffold 00166 (query sequence starts at base 74796)
1) For Primer CAGCTACAGCAACACCTTCAAT - Rev Primer AAGGGGGTAAAAGCTGTACCAT - Repeats (caa) x7 - PCR product = 245 bp - start at base 69326
2) For Primer AAACCAATCTTCTCCTTCTCCC - Rev Primer GGTGGTTGTTGTTGTTGTTGTT - Repeats (gca) x6 - PCR product = 282 bp - start at base 69223
3) For Primer GACATGGGAATCTTTGCCTTAG - Rev Primer CACTTCATCAAATAACCAGCCA - Repeats (ag) x19 - PCR product = 266 bp - start at base 119541
AT5G03840 (TERMINAL FLOWER 1, TFL1 of the Ambient Temperature pathway) found in Scaffold 00181 (query sequence starts at base 12825)
1) For Primer TCTAGTAGCTGGGGTGCTTCTC - Rev Primer AGCAGAAGGAAATAGCTCATGC - Repeats (tc) x11 - PCR product = 260 bp - start at base 12778
2) For Primer AGAATCATGCCAACAGAGGTTT - Rev Primer TAGACGGATGGCCTATCAAGTT - Repeats (ct) x9 - PCR product = 111 bp - start at base 13947
3) For Primer TACCAGTTCACGATCTCTCCCT - Rev Primer ACATCAACCCAACAACCTATCC - Repeats (tc) x8 - PCR product = 238 bp - start at base 27256
AT3G10390 (FLD, FLOWERING LOCUS D of the Ambient Temperature and Autonomous pathways) found in Scaffold 00232 (query sequence starts at base 139565)
1) For Primer CATAAACGGTTTTAGCAAGGCT - Rev Primer TCTCTGGGTGACCTTACCATCT - Repeats (ct) x8 - PCR product = 207 bp - start at base 132421
2) For Primer CAGTCCATGGGTATGCTTGATA - Rev Primer TTGCAATGATAAGTACCGCAAG - Repeats (at) x11 - PCR product = 273 bp - start at base 113550
3) For Primer CTTCTTGCTTTGCAGGCTTTAT - Rev Primer TTAGAATGGGGTGTGTGTGTGT - Repeats (tc) x12 - PCR product = 299 bp - start at base 153951
AT3G33520 (ACTIN-RELATED PROTEIN 6, ARP6, ATARP6, EARLY IN SHORT DAYS 1, ESD1, SUF3, SUPPRESSOR OF FRI 3 of the Ambient Temperature and Vernalization pathways) found in Scaffold 00246 (query sequence starts at base 268521)
1) For Primer CGAGGTCTGGGTTTATGAGGTA - Rev Primer GGGAAACAGAAGTCCAGAGAGA - Repeats (tc) x10 - PCR product = 265 bp - start at base 268979
2) For Primer TTCAACTGAGATGCGTTTAGGA - Rev Primer AAGCAGGTAAATGAGCCCAATA - Repeats (tg) x11 - PCR product = 258 bp - start at base 255772
3) For Primer CACCTTAACAAATGTGGAGCAA - Rev Primer CCCTCATTGATGTGTGTGTTCT - Repeats (tc) x14 - PCR product = 272 bp - start at base 239356
AT4G11880 (AGAMOUS-LIKE 14, AGL14 of the Vernalization pathway) found in Scaffold 00249 (query sequence starts at base 131012)
AT4G22950 (AGAMOUS-LIKE 19, AGL19, GL19 of the Vernalization pathway) found in Scaffold 00249 (query sequence starts at base 131012)
1) For Primer ACACTGTTCAGTTTCAAGGGGT - Rev Primer ACGAAACACATCAAGCTAGCAA - Repeats (at) x9 - PCR product = 285 bp - start at base 132095
2) For Primer TCAAGAACCTGTGAATCTGGAA - Rev Primer TAGGTTTTTCGGGTAACCTTGA - Repeats (ag) x14 - PCR product = 255 bp - start at base 102031
3) For Primer ATTGAACAACAGTTGGAGCAGA - Rev Primer TCAGTGTCGTGTCTATGTCGTG - Repeats (ga) x15 - PCR product = 258 bp - start at base 144337
AT5G11530 (EMBRYONIC FLOWER 1, EMF1 of the Polycomb pathway) found in Scaffold 00253 (query sequence starts at base 11069)
1) For Primer CTCTAACACATTCTGGTTGCCA - Rev Primer TGTATGAAGGTATCCATGCTGC - Repeats (aga) x6 - PCR product = 281 bp - start at base 15630
2) For Primer AAGCTTCACTTGGATTCTCCAC - Rev Primer GCCTTTTATTACAACAAAGCCG - Repeats (ag) x9 - PCR product = 271 bp - start at base 18170
3) For Primer TTTTGATGATGTCAGCAGGTCT - Rev Primer CCACTAGGCCTGATTTTCTCTG - Repeats (ga) x10 - PCR product = 243 bp - start at base 34859
AT2G40080 (EARLY FLOWERING 4, ELF4 of the Light Signaling pathway) found in Scaffold 00254 (query sequence starts at base 228805)
1) For Primer TGACCATCCCTTCTGAATTTCT - Rev Primer TTTCGACAATGCCAACAGATAC - Repeats (ct) x40 - PCR product = 288 bp - start at base 231757
2) For Primer TACACCTCTTCTCTCTCCTGCC - Rev Primer GACTGTTACAACTCCGCTTCCT - Repeats (ca) x12 - PCR product = 216 bp - start at base 233794
3) For Primer CCGTGTATCTATCTCCACTCCC - Rev Primer AGTTTCGAACAGTGCTTTCACA - Repeats (aga) x11 - PCR product = 283 bp - start at base 238558
AT2G34140 (of the Light Signaling pathway) found in Scaffold 00270 (query sequence starts at base 215217)
AT1G29160 (of the Light Signaling pathway) found in Scaffold 00270 (query sequence starts at base 215229)
1) For Primer TGGGACCTGATCTTTTTCTTGT - Rev Primer TGCCCGTTATTGTGTTTGTAAG - Repeats (ga) x18 - PCR product = 226 bp - start at base 215694
2) For Primer CGGATCTTCTCTGTCTGCTTCT - Rev Primer CCCCCTCACCTACTCTTCTTCT - Repeats (ct) x8 - PCR product = 252 bp - start at base 235137
3) For Primer ATTTAACCCCCTCCAACATTCT - Rev Primer GAATTGGCTGGAAATGCATAGT - Repeats (ac) x11 - PCR product = 237 bp - start at base 146669
AT1G31814 (FRIGIDA LIKE 2, FRL2 of the Vernalization pathway) found in Scaffold 00289 (query sequence starts at base 150896)
1) For Primer TTAGCAATAATCCACACGATGC - Rev Primer TATGAAATCCCAAACAGGGAAC - Repeats (at) x10 - PCR product = 278 bp - start at base 140291
2) For Primer TACTATTGGGATAGTGGTGGGG - Rev Primer CTTCCTTCATTCTTAGCTTGTTCTG - Repeats (ct) x16 - PCR product = 256 bp - start at base 138109
3) For Primer TATGCATTTGCTAACGGATGTC - Rev Primer GCCTTCTGCGAATAGAAAAGAA - Repeats (gt) x10 - PCR product = 131 bp - start at base 162744
AT4G08920 (ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, CRYPTOCHROME 1, ELONGATED HYPOCOTYL 4, HY4, OOP2, OUT OF PHASE 2 of the Light Signaling pathway) found in Scaffold 00331 (query sequence starts at base 124817) – MIKE N
1) For Primer GACATTCAATACGCACCTACCA - Rev Primer AAGGTGCATCGCTTACTACCTC - Repeats (tc) x9 - PCR product = 197 bp - start at base 114263
2) For Primer TTCTCGAACATTATTCCTCTGC - Rev Primer TAGAGAAACCGAGAGAGGATGG - Repeats (ga) x13 - PCR product = 282 bp - start at base 159723
3) For Primer CAGTCGCAAACAAACCTACTCC - Rev Primer TGCCCTAACTTCATTCTCCCTA - Repeats (tcc) x6 - PCR product = 276 bp - start at base 61835
AT2G06255 (ELF4-L3, ELF4-LIKE 3 of the Light Signaling pathway) found in Scaffold 00336 (query sequence starts at base 188137)
1) For Primer AAGTTGGGGTATTCTGTTGTGG - Rev Primer ACTACAATCGTGTAGTGCGGTG - Repeats (ag) x13 - PCR product = 185 bp - start at base 167935
2) For Primer GAAAAACCAAACAAACCTCCAC - Rev Primer CCACAACAGAATACCCCAACTT - Repeats (ga) x10 - PCR product = 277 bp - start at base 167792
3) For Primer AGGTGCAGGGTTCTTACTTGAG - Rev Primer ACAAGCCGAGGTACAAAGAAAA - Repeats (ct) x10 - PCR product = 106 bp - start at base 201634
AT1G30970 (SUF4, SUPPRESSOR OF FRIGIDA4 of the Vernalization pathway) found in Scaffold 00348 (query sequence starts at base 75279)
1) For Primer TTTACGGATATCATCACCCCTC - Rev Primer TGTTTTGCAAGTTCTCCTCTCA - Repeats (tg) x9 - PCR product = 215 bp - start at base 66541
2) For Primer GATGCAGACATGCTAGGGATAC - Rev Primer CAATATGTTGTGGACACCCAAG - Repeats (ca) x10 - PCR product = 297 bp - start at base 65411
3) For Primer GGGTTTATGGTGTTTGTGAAGG - Rev Primer TTTAGAGTGTCTCGGAACACCA - Repeats (ta) x10 - PCR product = 292 bp - start at base 122301
AT2G23380 (CLF, CURLY LEAF, ICU1, INCURVATA 1, SDG1, SET1, SETDOMAIN 1, SETDOMAIN GROUP 1 of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 00354 (query sequence starts at base 64799)
AT4G02020 (EZA1, SDG10, SET DOMAIN-CONTAINING PROTEIN 10, SWINGER, SWN of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 00354 (query sequence starts at base 64799)
AT1G02580 (EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEA, MEDEA, SDG5, SET DOMAIN-CONTAINING PROTEIN 5 of the Polycomb pathway) found in Scaffold 00354 (query sequence starts at base 64805)
1) For Primer TCAGGAACATTGACTATGCAGG - Rev Primer GTTAAAGAAACGATCCGACTGC - Repeats (tc) x8 - PCR product = 285 bp - start at base 53913
2) For Primer ATTTCAACTGATTTAGCTGGGC - Rev Primer CTTGAGTTCAATCCCTCATCTACA - Repeats (ct) x31 - PCR product = 222 bp - start at base 49463
3) For Primer GTTGCCAGCTGAATATCCTTTC - Rev Primer GTGTGTGTGTGTGTGTGTGTGA - Repeats (tc) x14 - PCR product = 163 bp - start at base 81106
AT1G65480 (FLOWERING LOCUS T, FT of the Ambient Temperature pathway) found in Scaffold 00357 (query sequence starts at base 58774)
AT4G20370 (TSF, TWIN SISTER OF FT of the Ambient Temperature pathway) found in Scaffold 00357 (query sequence starts at base 58807) – MIKE N
1) For Primer GCCCACCCTTAGTTATGTTGAC - Rev Primer GAGAGACAGAAGACAGAGAAGAGG - Repeats (ct) x11 - PCR product = 225 bp - start at base 76826
2) For Primer CGCCACGGAAATATATAGGAGA - Rev Primer TGCACGTTTCAAAGTATTGACC - Repeats (at) x10 - PCR product = 221 bp - start at base 29021
3) For Primer GCAATTGCGTAGATGACTTCAG - Rev Primer CTCCAAAGATGTATGCCCTACC - Repeats (tc) x13 - PCR product = 197 bp - start at base 83551
AT2G17770 (ATBZIP27, BASIC REGION/LEUCINE ZIPPER MOTIF 27, BZIP27, FD PARALOG, FDP of the Ambient Temperature pathway) found in Scaffold 00367 (query sequence starts at base 113139)
AT4G35900 (ATBZIP14, FD, FD-1 of the Ambient Temperature pathway) found in Scaffold 00367 (query sequence starts at base 113139)
1) For Primer GTTTTTGTTGGAGAGGAAGTCG - Rev Primer AGTACCAAATCCCCAAACACAC - Repeats (ag) x9 - PCR product = 188 bp - start at base 113601
2) For Primer GCTTTCTCAGAATGGAGCTGTT - Rev Primer TCAGACAGAGCAGTTGGGTAGA - Repeats (ca) x10 - PCR product = 278 bp - start at base 110027
3) For Primer GATGAAGAGAAGTCTCGGGCTA - Rev Primer GCACCATGCAAGGATTATAACA - Repeats (ct) x10 - PCR product = 243 bp - start at base 100134
AT2G25930 (EARLY FLOWERING 3, ELF3, PYK20 of the Light Signaling pathway) found in Scaffold 00371 (query sequence starts at base 73111)
1) For Primer GTGTGCGTGAGAGAGAGAGAGA - Rev Primer ATCTGAAAAGAAAGGCTTGTGG - Repeats (ag) x18 - PCR product = 245 bp - start at base 71081
2) For Primer ATCCAGTTGAAGGCATCTGATT - Rev Primer GGCAATGCCTTTTCTGTAGTTT - Repeats (ga) x17 - PCR product = 283 bp - start at base 71026
3) For Primer ATCCAGTTGAAGGCATCTGATT - Rev Primer GGCAATGCCTTTTCTGTAGTTT - Repeats (tg) x9 - PCR product = 283 bp - start at base 71005
AT3G24440 (VERNALIZATION 5, VIL1, VIN3-LIKE 1, VRN5 of the Autonomous and Vernalization pathways) found in Scaffold 00396 (query sequence starts at base 73795)
AT2G18870 (VEL3, VERNALIZATION5/VIN3-LIKE 3, VIL4, VIN3-LIKE 4 of the Autonomous pathway) found in Scaffold 00396 (query sequence starts at base 73810)
1) For Primer CATCGGTCCATAGAGAACACAA - Rev Primer GCAGAGTCGTGTCCTTTCTTTT - Repeats (ag) x9 - PCR product = 232 bp - start at base 82383
2) For Primer GGGGATGGTTACCTGTGAATAA - Rev Primer TGACTCATCAGTCCCTCTCTCA - Repeats (ct) x8 - PCR product = 233 bp - start at base 85845
3) For Primer ATTTTTAGAACTGTGCCAAGCC - Rev Primer CCTACTTGAACCGAACTGGTTT - Repeats (tc) x9 - PCR product = 298 bp - start at base 50548
AT3G21320 (of the Light Signaling pathway) found in Scaffold 00509 (query sequence starts at base 181887)
1) For Primer TCACGTAGGCAGTCAAAACAAC - Rev Primer GGCAACATATGTCGGGTAATTT - Repeats (ct) x26 - PCR product = 259 bp - start at base 189409
2) For Primer AGCTCCTCCCATTACAATCTCA - Rev Primer ATGAACTGCTTATGCAATGTGG - Repeats (tg) x12 - PCR product = 272 bp - start at base 169832
3) For Primer GAAATCAATGGAACTACCTCGG - Rev Primer AAATACTACATGGCGCTGTTGA - Repeats (at) x10 - PCR product = 259 bp - start at base 149049
AT1G47250 (20S PROTEASOME ALPHA SUBUNIT F2, PAF2 of the Vernalization pathway) found in Scaffold 00528 (query sequence starts at base 110933)
AT5G42790 (ARS5, ARSENIC TOLERANCE 5, ATPSM30, PAF1, PROTEASOME ALPHA SUBUNIT F1 of the Vernalization pathway) found in Scaffold 00528 (query sequence starts at base 110933)
1) For Primer CACGAAAGTAGACGCTGTGAAA - Rev Primer ATTTGAGCTGTCCAAAACACG - Repeats (ata) x9 - PCR product = 248 bp - start at base 108589
2) For Primer ACTTCCCTTAGTGCTGCTTGTC - Rev Primer GGACTAGGTTTTCTTCCCCACT - Repeats (tta) x7 - PCR product = 165 bp - start at base 112665
3) For Primer GAGAGAGACTGTGCATACACGC - Rev Primer AAAGGAAAAGAAGAACAAGGGG - Repeats (ga) x10 - PCR product = 223 bp - start at base 124597
AT5G58230 (ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, ATMSI1, MATERNAL EFFECT EMBRYO ARREST 70, MEE70, MSI1, MULTICOPY SUPRESSOR OF IRA1 of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 00615 (query sequence starts at base 161081)
1) For Primer GTGGGATCTTAGCAGGTTTGTC - Rev Primer TACAGTGGGAGGTGGAGTTTTT - Repeats (ct) x10 - PCR product = 128 bp - start at base 163332
2) For Primer AGAACCATAGCATAACGGCCTA - Rev Primer TATGGAGGGAAGAAATTTGGTG - Repeats (tc) x12 - PCR product = 145 bp - start at base 158582
3) For Primer TAGCACAGGCTCCCATTTTTAT - Rev Primer GCTAGTCTGCAGAGCCAAAGAT - Repeats (ag) x8 - PCR product = 219 bp - start at base 120273
AT1G04400 (AT-PHH1, ATCRY2, CRY2, CRYPTOCHROME 2, FHA, PHH1 of the Light Signaling pathway) found in Scaffold 00649 (query sequence starts at base 28296) – MIKE N
1) For Primer TGGTGGTGGTATATGGGTAACA - Rev Primer AATCAACAATCTCACTGCCGTT - Repeats (gtg) x8 - PCR product = 192 bp - start at base 22759
2) For Primer GTAGTGTGATGGTTATGGCGTG - Rev Primer TATACCACCACCACTATTGCCA - Repeats (tgg) x7 - PCR product = 131 bp - start at base 22555
3) For Primer TTGTTTCGCCATTAGGAGAGAT - Rev Primer CCTAAACCCAACTACCACTCCA - Repeats (ga) x10 - PCR product = 139 bp - start at base 49549
AT5G39660 (CDF2, CYCLING DOF FACTOR 2 of the Light Signaling pathway) found in Scaffold 00651 (query sequence starts at base 19066) – MIKE N
1) For Primer AAGTTGGTTTTGTGGCCTTAGA - Rev Primer TTTTTGGGCTAACGAAGAGTGT - Repeats (ct) x7 - PCR product = 295 bp - start at base 22514
2) For Primer TCAAAAGCACACAGAATCAAGC - Rev Primer TGCAAGAGCCAATCTCTCATAA - Repeats (ga) x7 - PCR product = 275 bp - start at base 27722
3) For Primer CCAGTTAGATTGGTGACATTGC - Rev Primer GGACCCATCACTAGATCCTCTG - Repeats (ct) x12 - PCR product = 192 bp - start at base 37067
AT5G23150 (ENHANCER OF AG-4 2, HUA2 of the Vernalization pathway) found in Scaffold 00686 (query sequence starts at base 102689)
1) For Primer GATGAAGAGAAGGCATCAGGTC - Rev Primer AATACCGATGTTTACCGGAGTG - Repeats (ct) x14 - PCR product = 221 bp - start at base 106315
2) For Primer GGATAATCAAAGATGCGAGAGG - Rev Primer ATACACCTTTGGATTCTGTGGG - Repeats (tg) x11 - PCR product = 290 bp - start at base 90834
3) For Primer ACACAACCTGCAATACTCCTCC - Rev Primer TACAAGGTGTGGTGAGTAACGG - Repeats (ta) x12 - PCR product = 284 bp - start at base 117010
AT2G42200 (ATSPL9, SPL9, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9 of the Age pathway) found in Scaffold 00691 (query sequence starts at base 61795) – CATHERINE D
1) For Primer TGTGGACCAACCAACATTAGAG - Rev Primer GAGACTTTTTGTGGTAGGCACC - Repeats (ta) x9 - PCR product = 298 bp - start at base 80542
2) For Primer CACCTTGAGATCTCTCTCTCTCTC - Rev Primer CCCAATCCACATTGAACAGAAT - Repeats (tc) x16 - PCR product = 300 bp - start at base 36515
3) For Primer GCACCATTCTTAATAACATTGCACC - Rev Primer CACGAGAGAGAGAGAGAGAGAGAGA - Repeats (tc) x11 - PCR product = 298 bp - start at base 36283
AT5G17690 (ATLHP1, LHP1, LIKE HETEROCHROMATIN PROTEIN 1, TERMINAL FLOWER 2, TFL2 of the Polycomb pathway) found in Scaffold 00696 (query sequence starts at base 128983)
1) For Primer CCACCTAATCCATTCAAAAAGG - Rev Primer TACCAAATCCCTCAATCCAAAG - Repeats (ag) x9 - PCR product = 293 bp - start at base 127286
2) For Primer GAGAGATGGGGCAACAAAAATA - Rev Primer GCAGGCCTTAATATGCAAGAAC - Repeats (ga) x8 - PCR product = 143 bp - start at base 81894
3) For Primer GCTACAAACCAAAAAGAATCGG - Rev Primer AAAAATCCTCCTTGACTGGGTT - Repeats (ac) x8 - PCR product = 298 bp - start at base 45233
AT2G19520 (ACG1, ATMSI4, FVE, MSI4, MULTICOPY SUPPRESSOR OF IRA1 4, NFC04, NFC4 of the Ambient Temperature and Autonomous pathways) found in Scaffold 00728 (query sequence starts at base 8716)
1) For Primer GCAGAAGGAAAACCAAAATCAC - Rev Primer GAGAGGGAGAGAGAGAAGGGAC - Repeats (ga) x11 - PCR product = 263 bp - start at base 2899
2) For Primer TAACCGGTTTTACCGTTTTCC - Rev Primer AGAACCAAGAATTCTGCATTGG - Repeats (tc) x10 - PCR product = 298 bp - start at base 111
3) For Primer CTTTATCATCTGCCTGCCTCTT - Rev Primer CGTAATAAAGAAGGTGGTTCGG - Repeats (tc) x16 - PCR product = 162 bp - start at base 36059
AT2G32950 (ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, ATCOP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, COP1, DEETIOLATED MUTANT 340, DET340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1 of the Light Signaling pathway) found in Scaffold 00734 (query sequence starts at base 142779)
AT2G46340 (SPA1, SUPPRESSOR OF PHYA-105 1 of the Light Signaling pathway) found in Scaffold 00734 (query sequence starts at base 142779)
AT1G53090 (SPA1-RELATED 4, SPA4 of the Light Signaling pathway) found in Scaffold 00734 (query sequence starts at base 143450)
AT3G15354 (SPA1-RELATED 3, SPA3 of the Light Signaling pathway) found in Scaffold 00734 (query sequence starts at base 143450)
1) For Primer GGAGGGGAAACAAGGATAGAAC - Rev Primer ATATTGAGGCTGTGGTCGTCTT - Repeats (aag) x8 - PCR product = 186 bp - start at base 148205
2) For Primer TTACCCCCTCTCTCTCTCATACC - Rev Primer AAACATCTTCAATCATGCTCCC - Repeats (tc) x15 - PCR product = 298 bp - start at base 136748
3) For Primer CCACAAAACAGCAGTAACCAAA - Rev Primer TACGGTATGAGAGAGAGAGGGG - Repeats (ga) x10 - PCR product = 122 bp - start at base 136457
AT2G18790 (HY3, OOP1, OUT OF PHASE 1, PHYB, PHYTOCHROME B of the Light Signaling pathway) found in Scaffold 00751 (query sequence starts at base 83698)
AT4G16250 (PHYD, PHYTOCHROME D of the Light Signaling pathway) found in Scaffold 00751 (query sequence starts at base 83707)
AT4G18130 (PHYE, PHYTOCHROME E of the Light Signaling pathway) found in Scaffold 00751 (query sequence starts at base 83749) – MIKE N
1) For Primer CCCGAAAATACCCTTTCTCTCT - Rev Primer GGCAATTACCAATTACGTGTCA - Repeats (aga) x8 - PCR product = 265 bp - start at base 81899
2) For Primer AAGAGGGGTAGACCAAAATTGA - Rev Primer AATTTCACTCCAACCAAGAAGG - Repeats (ag) x10 - PCR product = 262 bp - start at base 92356
3) For Primer TCTCTCATGCATGGATGGTTAT - Rev Primer CATTGAACATCTACCTGTGGGA - Repeats (ct) x10 - PCR product = 298 bp - start at base 73385
AT5G61380 (APRR1, ATTOC1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, TOC1 of the Light Signaling pathway) found in Scaffold 00753 (query sequence starts at base 70468)
1) For Primer CACTACATCCAAACAAAACCCA - Rev Primer TGCGTGCGATAATGGAGTATTA - Repeats (gt) x11 - PCR product = 284 bp - start at base 98714
2) For Primer CCTCGTGCACATACGAAAATTA - Rev Primer TACGTTGCACATTTTTCTCCAC - Repeats (ta) x8 - PCR product = 266 bp - start at base 52292
3) For Primer ATTTCTACCCTGTCCACCAAGA - Rev Primer GAGACAGAAGTGGCATCTGTGA - Repeats (ga) x17 - PCR product = 168 bp - start at base 102220
AT3G18990 (REDUCED VERNALIZATION RESPONSE 1, REM39, REPRODUCTIVE MERISTEM 39, VRN1 of the Vernalization pathway) found in Scaffold 00811 (query sequence starts at base 96661)
1) For Primer ACAGACCCTCCTGCCTTCAC - Rev Primer TCTGAACTGCTCATACCCTGAA - Repeats (ag) x21 - PCR product = 251 bp - start at base 89371
2) For Primer TAAGGAGTGGGCACGGTATATT - Rev Primer AATGTTTTGAGGTCTCTGGGAA - Repeats (tc) x8 - PCR product = 260 bp - start at base 100084
3) For Primer GACTTAACAGCAGCCTGGTACA - Rev Primer AGTACCAATAAGTACCGCGTCG - Repeats (ag) x8 - PCR product = 112 bp - start at base 100915
AT3G07650 (B-BOX DOMAIN PROTEIN 7, BBX7, COL9, CONSTANS-LIKE 9 of the Light Signaling pathway) found in Scaffold 00832 (query sequence starts at base 89599)
1) For Primer TTATATGGTCGCTGATCCCTTT - Rev Primer TGAAGGGGAGAAATAGCACCTA - Repeats (tc) x7 - PCR product = 233 bp - start at base 58681
2) For Primer GACCCTGTTCAAATTTTGCTTC - Rev Primer TCAAAGGAGCGGAGAAGAATAG - Repeats (ga) x9 - PCR product = 212 bp - start at base 21272
3) For Primer GACCCTGTTCAAATTTTGCTTC - Rev Primer TCAAAGGAGCGGAGAAGAATAG - Repeats (ca) x8 - PCR product = 212 bp - start at base 21256
AT5G51230 (ATEMF2, CYR1, CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, EMF2, VEF2 of the Polycomb pathway) found in Scaffold 00857 (query sequence starts at base 44887)
AT4G16845 (REDUCED VERNALIZATION RESPONSE 2, VRN2 of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 00857 (query sequence starts at base 55203)
AT2G35670 (FERTILIZATION INDEPENDENT SEED 2, FERTILIZATION-INDEPENDENT ENDOSPERM 2, FIE2, FIS2 of the Polycomb pathway) found in Scaffold 00857 (query sequence starts at base 55565)
1) For Primer CATGTGTGTGTGATCAAAGGTG - Rev Primer ACGTATGACAGACGCAAAACAC - Repeats (tc) x9 - PCR product = 274 bp - start at base 67373
2) For Primer CCAAAGCCTTAAAAACGACACT - Rev Primer ATGATTGGAAAGAAGGGAGTGA - Repeats (ct) x11 - PCR product = 204 bp - start at base 113486
3) For Primer CCCCCTCTATATATCCACCACA - Rev Primer GAGGGTACTGGTGATGAAGGAG - Repeats (cac) x8 - PCR product = 214 bp - start at base 125050
AT1G77300 (ASH1 HOMOLOG 2, ASHH2, CAROTENOID CHLOROPLAST REGULATORY1, CCR1, EARLY FLOWERING IN SHORT DAYS, EFS, LAZ2, LAZARUS 2, SDG8, SET DOMAIN GROUP 8 of the Vernalization pathway) found in Scaffold 00894 (query sequence starts at base 89213)
1) For Primer GTAAAAGCGTTCGTATTTGCCT - Rev Primer TTAAGGGTGGCTCTGATACCAT - Repeats (ct) x10 - PCR product = 295 bp - start at base 77010
2) For Primer AAACTGCTTACTTTCCGTTTGC - Rev Primer TCATGTGCTGACCTACAAATCC - Repeats (tag) x10 - PCR product = 254 bp - start at base 71796
3) For Primer AAAGAAGCACCGAACTGGATAG - Rev Primer CGGTTCCGGGTACATATAAAAA - Repeats (ga) x10 - PCR product = 293 bp - start at base 92614
AT5G37055 (ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING of the Vernalization pathway) found in Scaffold 00925 (query sequence starts at base 38143)
1) For Primer GCCTGATAGAAGGGACGTACAC - Rev Primer TGCTGGATGTATCCTTCATTTG - Repeats (ctt) x8 - PCR product = 286 bp - start at base 45585
2) For Primer GAATGGCGACATTGTTAGATCA - Rev Primer TAGAAATCCCACGATACGAAGG - Repeats (tg) x11 - PCR product = 173 bp - start at base 17776
3) For Primer CTTTCAGGATTCATTTTCCAGC - Rev Primer TGTTGGCTTCACTCCATGTATC - Repeats (ag) x8 - PCR product = 204 bp - start at base 5444
AT3G25730 (EDF3, ETHYLENE RESPONSE DNA BINDING FACTOR 3 of the Light Signaling pathway) found in Scaffold 00930 (query sequence starts at base 63060)
AT1G13260 (EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, RELATED TO ABI3/VP1 1 of the Light Signaling pathway) found in Scaffold 00930 (query sequence starts at base 63069)
AT1G25560 (EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 of the Light Signaling pathway) found in Scaffold 00930 (query sequence starts at base 63096)
AT1G68840 (ATRAV2, EDF2, ETHYLENE RESPONSE DNA BINDING FACTOR 2, RAP2.8, RAV2, RELATED TO ABI3/VP1 2, RELATED TO AP2 8, TEM2, TEMPRANILLO 2 of the Light Signaling pathway) found in Scaffold 00930 (query sequence starts at base 63096)
1) For Primer ATTATGTGGAAAGCAAACCGAC - Rev Primer TAGTTTGTGGCAAATGAGGATG - Repeats (ct) x11 - PCR product = 189 bp - start at base 62365
2) For Primer CCATGTGAAAAGGGATAAGCAT - Rev Primer TTGTTTGGTGCTCCTCTACTCA - Repeats (gat) x9 - PCR product = 158 bp - start at base 57313
3) For Primer NGTTGCATGCTAATCTCTTTGG - Rev Primer ATGAAATGTGGGACTCTGTTCC - Repeats (ta) x11 - PCR product = 214 bp - start at base 54197
AT5G08330 (CCA1 HIKING EXPEDITION, CHE, TRANSCRIPTION FACTOR TCP21, TCP21 of the Light Signaling pathway) found in Scaffold 00993 (query sequence starts at base 294)
1) For Primer ATCCACTCGATTGAAGCAAGAT - Rev Primer GGTTTCTTCACAGTTAGGGCTC - Repeats (aac) x7 - PCR product = 190 bp - start at base 261
2) For Primer CCTCTTGCTGGTAAGCACTCTT - Rev Primer ATGGTCTAGAACCAAACATGGG - Repeats (gt) x11 - PCR product = 208 bp - start at base 13096
3) For Primer ACATGTTCCAAACAAACCCTTC - Rev Primer GCGTCTCCTCTCTCTCTCTCTC - Repeats (ag) x12 - PCR product = 292 bp - start at base 18424
AT4G11110 (SPA1-RELATED 2, SPA2 of the Light Signaling pathway) found in Scaffold 01034 (query sequence starts at base 19205)
1) For Primer CGGCCTAAAACACTTATCGAAC - Rev Primer AACGGGCTTCCTCTACATACAA - Repeats (ag) x9 - PCR product = 222 bp - start at base 14166
2) For Primer CACGCCTCTCTCTCTCTCTCTC - Rev Primer CTACAAAAGTCTCCAAACCCCA - Repeats (ct) x20 - PCR product = 180 bp - start at base 3833
3) For Primer ACTTCTTGTTTTGAGGGGGAAT - Rev Primer TAGGTAACTCATGCTCTGGGGT - Repeats (ct) x11 - PCR product = 157 bp - start at base 34735
AT2G47700 (RED AND FAR-RED INSENSITIVE 2, RFI2 of the Light Signaling pathway) found in Scaffold 01059 (query sequence starts at base 96557)
1) For Primer TAACAGGAGCACAATGATCCAA - Rev Primer TCTCTCTCCCTCTCTCGCTCTA - Repeats (ga) x8 - PCR product = 247 bp - start at base 73538
2) For Primer ACACATGGCTTGATCTACTTCG - Rev Primer GCGAGGTAAGAGAGAAGGACAA - Repeats (tc) x28 - PCR product = 300 bp - start at base 62959
3) For Primer CCTCTCCAGTATTACTCACCCG - Rev Primer TAAGAAAGGAACGAACCTTGGA - Repeats (tc) x8 - PCR product = 294 bp - start at base 54451
AT5G35840 (PHYC, PHYTOCHROME C of the Light Signaling pathway) found in Scaffold 01070 (query sequence starts at base 75395)
1) For Primer TGAACGGGTCCAGTCTATTCTT - Rev Primer TTTGGTGTCTCTTCTGGGTTTT - Repeats (ag) x14 - PCR product = 182 bp - start at base 56787
2) For Primer AATCCCATGTCGACACCTATTC - Rev Primer TGCCTTCAAATCAGACTAAGCA - Repeats (gca) x6 - PCR product = 186 bp - start at base 97674
3) For Primer GGGAGGAAATCCACTAAAAAGG - Rev Primer CCTGTTGGTGGTCTTGCATATT - Repeats (tg) x17 - PCR product = 298 bp - start at base 16459
AT5G62430 (CDF1, CYCLING DOF FACTOR 1 of the Light Signaling pathway) found in Scaffold 01102 (query sequence starts at base 51435) – MIKE N
1) For Primer AGGATGAGTGAAAGAGCGTACC - Rev Primer CCAGATTTTTCAGAGAATTGGC - Repeats (ag) x12 - PCR product = 253 bp - start at base 45392
2) For Primer TTCTCCATCTTTAACGTCAGCA - Rev Primer GATTGCACGTACTTCACCAAGA - Repeats (ga) x32 - PCR product = 260 bp - start at base 78317
3) For Primer GTGTGTAATGGGACAAGCCTTT - Rev Primer GCTAAAATAGGCCCAGTAGGCT - Repeats (ac) x11 - PCR product = 289 bp - start at base 81642
AT3G46640 (LUX, LUX ARRHYTHMO, PCL1, PHYTOCLOCK 1 of the Light Signaling pathway) found in Scaffold 01150 (query sequence starts at base 80272)
1) For Primer CCTTGTCTGCACACTTAGCATC - Rev Primer AAATTGAGTGAGATAAGCCCCA - Repeats (gaa) x8 - PCR product = 197 bp - start at base 72111
2) For Primer ACATATGGTTTCTATGTGCCCC - Rev Primer TTGTTCGATTACAGGAGCAGAA - Repeats (ga) x9 - PCR product = 277 bp - start at base 64622
3) For Primer CTTTCAGCAACTTCTCCTTCGT - Rev Primer TGAGATCCCAACCACAATGTTA - Repeats (tc) x18 - PCR product = 242 bp - start at base 30081
AT2G22540 (AGAMOUS-LIKE 22, AGL22, SHORT VEGETATIVE PHASE, SVP of the Ambient Temperature and Vernalization pathways) found in Scaffold 01187 (query sequence starts at base 47701)
AT4G24540 (AGAMOUS-LIKE 24, AGL24 of the Vernalization pathway) found in Scaffold 01187 (query sequence starts at base 47701)
1) For Primer CAAATGGTGATAGCAAACATGG - Rev Primer CTCAAAGAAAATTCCCAAGACG - Repeats (tta) x7 - PCR product = 274 bp - start at base 57880
2) For Primer GCTACTGTTCTCGTCTCCTCGT - Rev Primer TCAATAGAACCTTCCACCGACT - Repeats (ct) x13 - PCR product = 116 bp - start at base 78977
3) For Primer AATGTTTTGTGTCTCCCAATCC - Rev Primer GGCACAACGCTAGTTGATAAAG - Repeats (ga) x12 - PCR product = 275 bp - start at base 95120
AT4G34530 (CIB1, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1 of the Light Signaling pathway) found in Scaffold 01322 (query sequence starts at base 82955)
1) For Primer ACCTTTTCCCGGAACTATGATT - Rev Primer GGTTAAAACCGTAAACGACAGC - Repeats (gt) x20 - PCR product = 243 bp - start at base 88042
2) For Primer AAGATGGAGATAAGCAGGTCCC - Rev Primer TTCTAGTCTTAGCGTGGATGGC - Repeats (ag) x11 - PCR product = 290 bp - start at base 75518
3) For Primer TCAAAGAGCTTGTTCTGCTGTG - Rev Primer CCCTCAACCCTCTTCTTCTTTT - Repeats (ga) x9 - PCR product = 143 bp - start at base 61574
AT1G14920 (GAI, GIBBERELLIC ACID INSENSITIVE, RESTORATION ON GROWTH ON AMMONIA 2, RGA2 of the Gibberellin pathway) found in Scaffold 01360 (query sequence starts at base 51382)
AT2G01570 (REPRESSOR OF GA, REPRESSOR OF GA1-3 1, RGA, RGA1 of the Gibberellin pathway) found in Scaffold 01360 (query sequence starts at base 51382)
1) For Primer CCCTCTCCCTCATTCTAACCTT - Rev Primer GTGCCTTAGGGTACCAAATCAA - Repeats (tc) x11 - PCR product = 252 bp - start at base 68499
2) For Primer ACCCACTTTCAGAGAAATTCCA - Rev Primer ACGGAGTCTTTATCGGTTGAAA - Repeats (ct) x18 - PCR product = 267 bp - start at base 39593
3) For Primer TTCTAGTACCGCGCTTTTTCTC - Rev Primer ATCAACAAAGGGTTTCAGGCTA - Repeats (tc) x17 - PCR product = 286 bp - start at base 75242
AT3G04610 (FLK, FLOWERING LOCUS KH DOMAIN of the Autonomous pathway) found in Scaffold 01384 (query sequence starts at base 28309)
1) For Primer GCAAAAATGGGTAGGTCTTCTG - Rev Primer CCACGTGTTACATTTGTCTTGG - Repeats (ag) x9 - PCR product = 226 bp - start at base 27550
2) For Primer GGAATTGGGATGAAATGAGAAG - Rev Primer CGGAACAATTATCTTCCTCGTC - Repeats (ta) x10 - PCR product = 258 bp - start at base 46362
3) For Primer CGAGTAATATTTCCGAAGCACA - Rev Primer ATTAAAAGCGTGAGAGGCAGAG - Repeats (aat) x10 - PCR product = 266 bp - start at base 49252
AT3G20740 (FERTILIZATION-INDEPENDENT ENDOSPERM, FERTILIZATION-INDEPENDENT ENDOSPERM 1, FIE, FIE1, FIS3 of the Autonomous, Polycomb, and Vernalization pathways) found in Scaffold 01670 (query sequence starts at base 9836)
1) For Primer CCTCTCCCTCAATTCTCTCTCA - Rev Primer CTTGTTCTCGTTGTCGAGTTTG - Repeats (cgg) x5 - PCR product = 287 bp - start at base 4993
2) For Primer GCGATGCAGAAGTTGTTGATAG - Rev Primer ACACCTTACCGATTCAAGTGCT - Repeats (ta) x6 - PCR product = 223 bp - start at base 31113
3) For Primer GCAATTTCATCTTCGCTCTCTT - Rev Primer GAGCGTTTGTATGGAGTGAATG - Repeats (ct) x5 - PCR product = 298 bp - start at base 59874
AT2G43410 (FPA of the Autonomous pathway) found in Scaffold 01689 (query sequence starts at base 47663)
1) For Primer AGAATTTAAGGGGGTTTGGTGT - Rev Primer CGTGTAAACTGTAAAGTAGTTGGG - Repeats (ac) x10 - PCR product = 111 bp - start at base 45530
2) For Primer TACGGCGAAGACCAGATTTATT - Rev Primer AAAAACTTGGGGTCTGTAGGGT - Repeats (ct) x9 - PCR product = 135 bp - start at base 25148
3) For Primer TATGGGCCAGCGTTTACTTACT - Rev Primer CAGTTCCTGCTTGTCAAGTGTC - Repeats (gt) x14 - PCR product = 255 bp - start at base 10708
AT3G02380 (ATCOL2, B-BOX DOMAIN PROTEIN 3, BBX3, COL2, CONSTANS-LIKE 2 of the Light Signaling pathway) found in Scaffold 01843 (query sequence starts at base 40767)
AT5G15840 (B-BOX DOMAIN PROTEIN 1, BBX1, CO, CONSTANS, FG of the Light Signaling pathway) found in Scaffold 01843 (query sequence starts at base 40767)
AT5G15850 (ATCOL1, B-BOX DOMAIN PROTEIN 2, BBX2, COL1, CONSTANS-LIKE 1 of the Light Signaling pathway) found in Scaffold 01843 (query sequence starts at base 40767) – MIKE N
1) For Primer GAAACAGATGGCATGGTGAGTA - Rev Primer CTCCAAAACCCTATGAAAGTGC - Repeats (tc) x11 - PCR product = 275 bp - start at base 48319
2) For Primer GTCATCCTCGAAGAAAGACACC - Rev Primer TCGACTGGAATTGTCTCCCTAT - Repeats (ct) x7 - PCR product = 287 bp - start at base 48872
3) For Primer AGGGAAGTAGCAGCAAAGACAT - Rev Primer AGAACCCTGATGAGTTGAGGAA - Repeats (ca) x11 - PCR product = 133 bp - start at base 18196
AT5G60100 (APRR3, PRR3, PSEUDO-RESPONSE REGULATOR 3 of the Light Signaling pathway) found in Scaffold 02075 (query sequence starts at base 14139)
1) For Primer GCATGTTAAAAGGTGCTGTTGA - Rev Primer ACTTCGACTTTCTCTTGTTCCG - Repeats (ct) x7 - PCR product = 238 bp - start at base 14277
2) For Primer GATCACCATTTCACAAGCTGAG - Rev Primer ATACATTTCAGATATGCGCGTG - Repeats (ga) x7 - PCR product = 263 bp - start at base 14887
3) For Primer CCTTTCTCTTATTCTCTCGCCA - Rev Primer AGCCATAGAGTGAGGACGGTTA - Repeats (ct) x8 - PCR product = 293 bp - start at base 20948
AT1G20330 (COTYLEDON VASCULAR PATTERN 1, CVP1, FRILL1, FRL1, SMT2, STEROL METHYLTRANSFERASE 2 of the Vernalization pathway) found in Scaffold 02142 (query sequence starts at base 24743)
1) For Primer TATCAGAAGACGTCCCAGAGGT - Rev Primer GGTCGAGATGCACAATTAGACA - Repeats (ct) x10 - PCR product = 182 bp - start at base 35782
2) For Primer CGTTTTGGGTGAGTACAAGTGA - Rev Primer CCACATTCCCGATCTTATTGTT - Repeats (tc) x6 - PCR product = 235 bp - start at base 23016
3) For Primer CGAATCTTGTTGTCGTATTGGA - Rev Primer ATCAGCACATTCTCAGAAAGCA - Repeats (ct) x5 - PCR product = 252 bp - start at base 22648
AT1G09570 (ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A of the Light Signaling pathway) found in Scaffold 03861 (query sequence starts at base 3771) – MIKE N
No adequate SSRs could be found
AT5G65060 (AGAMOUS-LIKE 70, AGL70, FCL3, MADS AFFECTING FLOWERING 3, MAF3 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 639)
AT5G65080 (AGAMOUS-LIKE 68, AGL68, MADS AFFECTING FLOWERING 5, MAF5 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 699)
AT5G10140 (AGAMOUS-LIKE 25, AGL25, FLC, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 708)
AT5G65050 (AGAMOUS-LIKE 31, AGL31, MADS AFFECTING FLOWERING 2, MAF2 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 723)
AT5G65070 (AGAMOUS-LIKE 69, AGL69, FCL4, MADS AFFECTING FLOWERING 4, MAF4 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 723)
AT1G77080 (AGAMOUS-LIKE 27, AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1 of the Ambient Temperature and Vernalization pathways) found in Scaffold 10765 (query sequence starts at base 744)
No adequate SSRs could be found
AT5G24930 (ATCOL4, B-BOX DOMAIN PROTEIN 5, BBX5, COL4, CONSTANS-LIKE 4 of the Light Signaling pathway) found in Scaffold 11225 (query sequence starts at base 2816)
AT5G57660 (ATCOL5, B-BOX DOMAIN PROTEIN 6, BBX6, COL5, CONSTANS-LIKE 5 of the Light Signaling pathway) found in Scaffold 11225 (query sequence starts at base 2816)
1) For Primer CTCCGTTCCAAAATAAGTGTCC - Rev Primer ACGTACTACTCCCTCCATTCCA - Repeats (ag) x5 - PCR product = 240 bp - start at base 442
Only one adequate SSR could be found
