Difference between revisions of "JP Feb 16 16"
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[[Julia Preziosi]] | [[Julia Preziosi]] | ||
| − | Wrote a python | + | Wrote a [[Media:Renamer.txt]] python document to rename the raw fastq files. |
| + | |||
| + | Go to Terminal. | ||
| + | Go into your destination file. | ||
| + | cp -r ../campbell/fastQCintestine/trim_#i.fastq #destination_file_name | ||
| + | |||
| + | |||
Ran Blast2Go using NCBI database and the following parameters (default): | Ran Blast2Go using NCBI database and the following parameters (default): | ||
| + | |||
[[File:default1.png]] | [[File:default1.png]] | ||
[[File:default2.png]] | [[File:default2.png]] | ||
| + | |||
| + | |||
| + | Blast2GO on the first 20 genes from small intestine trimmed 1: | ||
| + | The blast search took 3 minutes for 20 sequences on 20-results output. | ||
| + | |||
| + | [[File:blast2go20.png]] | ||
| + | |||
| + | Press "mapping" | ||
| + | Press "annotate" | ||
| + | |||
| + | We then ran 250 | ||
Latest revision as of 19:57, 16 February 2016
Wrote a Media:Renamer.txt python document to rename the raw fastq files.
Go to Terminal. Go into your destination file. cp -r ../campbell/fastQCintestine/trim_#i.fastq #destination_file_name
Ran Blast2Go using NCBI database and the following parameters (default):
Blast2GO on the first 20 genes from small intestine trimmed 1:
The blast search took 3 minutes for 20 sequences on 20-results output.
Press "mapping" Press "annotate"
We then ran 250
