Difference between revisions of "DNA Sequences of Relevant Parts"
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| + | '''RegulonDB links to relevant regulatory elements''' | ||
| + | |||
| + | [http://regulondb.ccg.unam.mx/RegulonListControllerServlet?tf_fact_id=ECK120015681 LsrR] | ||
| + | |||
'''Hybrid promoter parts: | '''Hybrid promoter parts: | ||
''' | ''' | ||
| − | luxR/C1: | + | '''luxR/C1:''' |
| − | BBa_R0062(55 bp)luxR | + | BBa_R0062(55 bp) luxR |
acctgtaggatcgtacaggtttacgcaagaaaatggtttgttatagtcgaataaa | acctgtaggatcgtacaggtttacgcaagaaaatggtttgttatagtcgaataaa | ||
| − | BBa_R0051(49 bp)C1 | + | BBa_R0051(49 bp) C1 |
taacaccgtgcgtgttgactattttacctctggcggtgataatggttgc | taacaccgtgcgtgttgactattttacctctggcggtgataatggttgc | ||
| − | lac/mnt: | + | '''lac/mnt:''' |
BBa_I14032(37 bp) lac Iq | BBa_I14032(37 bp) lac Iq | ||
| Line 20: | Line 24: | ||
| − | BBa_C0072(288 bp)Mnt | + | BBa_C0072(288 bp) Mnt |
| + | |||
| + | atggcccgggatgatcctcacttcaattttcgtatgccaatggaagtaagagagaaattgaaatttagagcagaggcaaacggacggagcatgaactctg | ||
| + | agcttttgcaaatcgtacaagatgccctaagcaaaccgtcaccagtcactgggtaccgcaatgatgcggaacgactcgccgatgagcagagcgagttagt | ||
| + | gaagaagatggtcttcgatacactgaaggatctttataaaaaaaccaccgctgcaaacgacgaaaactacgctttagtagcttaataa | ||
| + | |||
| + | |||
| + | '''lsrR/C1:''' | ||
| + | |||
| + | lsrR promoter (assumed) | ||
| + | |||
| + | ACTTTGAA CATATTTAAA TCTTTAATGC AATTGTTCAG TTCTTGCTCA | ||
| + | TTTATATCTG TGATGGCAAC CACAGTTTGA CTCTACGAGC ATGAACAAAC GC | ||
| + | |||
| + | |||
| + | BBa_R0051(49 bp)C1 | ||
| + | |||
| + | taacaccgtgcgtgttgactattttacctctggcggtgataatggttgc | ||
| + | |||
| + | |||
| + | '''tetR/Mnt:''' | ||
| + | |||
| + | BBa_R0040(54 bp)tetR | ||
| + | |||
| + | tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcac | ||
| + | |||
| + | |||
| + | BBa_C0072(288 bp) Mnt | ||
| + | |||
| + | atggcccgggatgatcctcacttcaattttcgtatgccaatggaagtaagagagaaattgaaatttagagcagaggcaaacggacggagcatgaactctg | ||
| + | agcttttgcaaatcgtacaagatgccctaagcaaaccgtcaccagtcactgggtaccgcaatgatgcggaacgactcgccgatgagcagagcgagttagt | ||
| + | gaagaagatggtcttcgatacactgaaggatctttataaaaaaaccaccgctgcaaacgacgaaaactacgctttagtagcttaataa | ||
| + | |||
| + | |||
| + | |||
| + | '''Protein Coding Sequences:''' | ||
| + | |||
| + | BBa_C0061(618 bp) luxI gene | ||
| + | |||
| + | atgactataatgataaaaaaatcggattttttggcaattccatcggaggagtataaaggtattctaagtcttcgttatcaagtgtttaagcaaagacttg | ||
| + | agtgggacttagttgtagaaaataaccttgaatcagatgagtatgataactcaaatgcagaatatatttatgcttgtgatgatactgaaaatgtaagtgg | ||
| + | atgctggcgtttattacctacaacaggtgattatatgctgaaaagtgtttttcctgaattgcttggtcaacagagtgctcccaaagatcctaatatagtc | ||
| + | gaattaagtcgttttgctgtaggtaaaaatagctcaaagataaataactctgctagtgaaattacaatgaaactatttgaagctatatataaacacgctg | ||
| + | ttagtcaaggtattacagaatatgtaacagtaacatcaacagcaatagagcgatttttaaagcgtattaaagttccttgtcatcgtattggagacaaaga | ||
| + | aattcatgtattaggtgatactaaatcggttgtattgtctatgcctattaatgaacagtttaaaaaagcagtcttaaatgctgcaaacgacgaaaactac | ||
| + | gctttagtagcttaataa | ||
| + | |||
| + | BBa_C0072(288 bp) Mnt | ||
atggcccgggatgatcctcacttcaattttcgtatgccaatggaagtaagagagaaattgaaatttagagcagaggcaaacggacggagcatgaactctg | atggcccgggatgatcctcacttcaattttcgtatgccaatggaagtaagagagaaattgaaatttagagcagaggcaaacggacggagcatgaactctg | ||
agcttttgcaaatcgtacaagatgccctaagcaaaccgtcaccagtcactgggtaccgcaatgatgcggaacgactcgccgatgagcagagcgagttagt | agcttttgcaaatcgtacaagatgccctaagcaaaccgtcaccagtcactgggtaccgcaatgatgcggaacgactcgccgatgagcagagcgagttagt | ||
gaagaagatggtcttcgatacactgaaggatctttataaaaaaaccaccgctgcaaacgacgaaaactacgctttagtagcttaataa | gaagaagatggtcttcgatacactgaaggatctttataaaaaaaccaccgctgcaaacgacgaaaactacgctttagtagcttaataa | ||
| + | |||
| + | |||
| + | |||
| + | luxS gene | ||
| + | |||
| + | atgCCGTTGT TAGATAGCTT CACAGTCGAT CATACCCGGA TGGAAGCGCC TGCAGTTCGG | ||
| + | GTGGCGAAAA CAATGAACAC CCCGCATGGC GACGCAATCA CCGTGTTCGA TCTGCGCTTC | ||
| + | TGCGTGCCGA ACAAAGAAGT GATGCCAGAA AGAGGGATCC ATACCCTGGA GCACCTGTTT | ||
| + | GCTGGTTTTA TGCGTAACCA TCTTAACGGT AATGGTGTAG AGATTATCGA TATCTCGCCA | ||
| + | ATGGGCTGCC GCACCGGTTT TTATATGAGT CTGATTGGTA CGCCAGATGA GCAGCGTGTT | ||
| + | GCTGATGCCT GGAAAGCGGC AATGGAAGAC GTGCTGAAAG TGCAGGATCA GAATCAGATC | ||
| + | CCGGAACTGA ACGTCTACCA GTGTGGCACT TACCAGATGC ACTCGTTGCA GGAAGCGCAG | ||
| + | GATATTGCGC GTAGCATTCT GGAACGTGAC GTACGCATCA ACAGCAACGA AGAACTGGCA | ||
| + | CTGCCGAAAG AGAAGTTGCA GGAACTGCAC ATCTAG | ||
Latest revision as of 00:17, 18 June 2008
RegulonDB links to relevant regulatory elements
Hybrid promoter parts:
luxR/C1:
BBa_R0062(55 bp) luxR
acctgtaggatcgtacaggtttacgcaagaaaatggtttgttatagtcgaataaa
BBa_R0051(49 bp) C1
taacaccgtgcgtgttgactattttacctctggcggtgataatggttgc
lac/mnt:
BBa_I14032(37 bp) lac Iq
Tggtgcaaaacctttcgcggtatggcatgatagcgcc
BBa_C0072(288 bp) Mnt
atggcccgggatgatcctcacttcaattttcgtatgccaatggaagtaagagagaaattgaaatttagagcagaggcaaacggacggagcatgaactctg agcttttgcaaatcgtacaagatgccctaagcaaaccgtcaccagtcactgggtaccgcaatgatgcggaacgactcgccgatgagcagagcgagttagt gaagaagatggtcttcgatacactgaaggatctttataaaaaaaccaccgctgcaaacgacgaaaactacgctttagtagcttaataa
lsrR/C1:
lsrR promoter (assumed)
ACTTTGAA CATATTTAAA TCTTTAATGC AATTGTTCAG TTCTTGCTCA TTTATATCTG TGATGGCAAC CACAGTTTGA CTCTACGAGC ATGAACAAAC GC
BBa_R0051(49 bp)C1
taacaccgtgcgtgttgactattttacctctggcggtgataatggttgc
tetR/Mnt:
BBa_R0040(54 bp)tetR
tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcac
BBa_C0072(288 bp) Mnt
atggcccgggatgatcctcacttcaattttcgtatgccaatggaagtaagagagaaattgaaatttagagcagaggcaaacggacggagcatgaactctg agcttttgcaaatcgtacaagatgccctaagcaaaccgtcaccagtcactgggtaccgcaatgatgcggaacgactcgccgatgagcagagcgagttagt gaagaagatggtcttcgatacactgaaggatctttataaaaaaaccaccgctgcaaacgacgaaaactacgctttagtagcttaataa
Protein Coding Sequences:
BBa_C0061(618 bp) luxI gene
atgactataatgataaaaaaatcggattttttggcaattccatcggaggagtataaaggtattctaagtcttcgttatcaagtgtttaagcaaagacttg agtgggacttagttgtagaaaataaccttgaatcagatgagtatgataactcaaatgcagaatatatttatgcttgtgatgatactgaaaatgtaagtgg atgctggcgtttattacctacaacaggtgattatatgctgaaaagtgtttttcctgaattgcttggtcaacagagtgctcccaaagatcctaatatagtc gaattaagtcgttttgctgtaggtaaaaatagctcaaagataaataactctgctagtgaaattacaatgaaactatttgaagctatatataaacacgctg ttagtcaaggtattacagaatatgtaacagtaacatcaacagcaatagagcgatttttaaagcgtattaaagttccttgtcatcgtattggagacaaaga aattcatgtattaggtgatactaaatcggttgtattgtctatgcctattaatgaacagtttaaaaaagcagtcttaaatgctgcaaacgacgaaaactac gctttagtagcttaataa
BBa_C0072(288 bp) Mnt
atggcccgggatgatcctcacttcaattttcgtatgccaatggaagtaagagagaaattgaaatttagagcagaggcaaacggacggagcatgaactctg agcttttgcaaatcgtacaagatgccctaagcaaaccgtcaccagtcactgggtaccgcaatgatgcggaacgactcgccgatgagcagagcgagttagt gaagaagatggtcttcgatacactgaaggatctttataaaaaaaccaccgctgcaaacgacgaaaactacgctttagtagcttaataa
luxS gene
atgCCGTTGT TAGATAGCTT CACAGTCGAT CATACCCGGA TGGAAGCGCC TGCAGTTCGG GTGGCGAAAA CAATGAACAC CCCGCATGGC GACGCAATCA CCGTGTTCGA TCTGCGCTTC TGCGTGCCGA ACAAAGAAGT GATGCCAGAA AGAGGGATCC ATACCCTGGA GCACCTGTTT GCTGGTTTTA TGCGTAACCA TCTTAACGGT AATGGTGTAG AGATTATCGA TATCTCGCCA ATGGGCTGCC GCACCGGTTT TTATATGAGT CTGATTGGTA CGCCAGATGA GCAGCGTGTT GCTGATGCCT GGAAAGCGGC AATGGAAGAC GTGCTGAAAG TGCAGGATCA GAATCAGATC CCGGAACTGA ACGTCTACCA GTGTGGCACT TACCAGATGC ACTCGTTGCA GGAAGCGCAG GATATTGCGC GTAGCATTCT GGAACGTGAC GTACGCATCA ACAGCAACGA AGAACTGGCA CTGCCGAAAG AGAAGTTGCA GGAACTGCAC ATCTAG
