Difference between revisions of "TRNA Genes Check List 2009"

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Line 17: Line 17:
 
      
 
      
 
     [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RZFNDE6014&log%24=nucltop&blast_rank=7&list_uids=43445 Halobacterium cutirubrum transfer RNA-Gly (GCC)]   
 
     [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RZFNDE6014&log%24=nucltop&blast_rank=7&list_uids=43445 Halobacterium cutirubrum transfer RNA-Gly (GCC)]   
 +
    Score = 69.8 bits (76)
 
     E-value: 1e-09
 
     E-value: 1e-09
 
     Query Coverage: 100%
 
     Query Coverage: 100%
     Max Identity: 81%
+
     Identities = 58/71 (81%)
 +
    Gaps = 0/71 (0%)
 +
    Strand=Plus/Plus

Revision as of 16:54, 31 August 2009

tRNA 644031717: tRNA-Val

  Megablast results in the nr/nt database showed a match with the following statistics:
    Halobacterium cutirubrum transfer RNA-Val (GAC)
     E-value: 2e-18
     Query Coverage: 100%
     Max Identity: 90%

tRNA 644031821: tRNA-Gly

 Blastn results in the nr/nt database showed the following matches:
   Halobacterium volcanii Gly-tRNA-1A
    Score = 69.8 bits (76) 
    E-value: 1e-09
    Query Coverage: 100%
    Identities = 58/71 (81%)
    Gaps = 0/71 (0%)
    Strand=Plus/Plus
    
   Halobacterium cutirubrum transfer RNA-Gly (GCC)   
    Score = 69.8 bits (76)
    E-value: 1e-09
    Query Coverage: 100%
    Identities = 58/71 (81%)
    Gaps = 0/71 (0%)
    Strand=Plus/Plus