Difference between revisions of "TRNA Genes Check List 2009"
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'''tRNA 644031717: tRNA-Val''' | '''tRNA 644031717: tRNA-Val''' | ||
Megablast results in the nr/nt database showed a match with the following statistics: | Megablast results in the nr/nt database showed a match with the following statistics: | ||
− | [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RYTV7DV01N&log%24=nucltop&blast_rank=4&list_uids=43459 Halobacterium cutirubrum transfer RNA-Val (GAC)] | + | [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RYTV7DV01N&log%24=nucltop&blast_rank=4&list_uids=43459 Halobacterium cutirubrum transfer RNA-Val (GAC)] |
− | + | S = 99.0 bits (53) | |
− | + | E-value = 2e-18 | |
− | + | Query Coverage: 100% | |
+ | Identities = 69/76 (90%) | ||
+ | Gaps = 3/76 (3%) | ||
+ | Strand=Plus/Plus | ||
'''tRNA 644031821: tRNA-Gly''' | '''tRNA 644031821: tRNA-Gly''' | ||
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[http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RZFNDE6014&log%24=nucltop&blast_rank=6&list_uids=174713 Halobacterium volcanii Gly-tRNA-1A] | [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RZFNDE6014&log%24=nucltop&blast_rank=6&list_uids=174713 Halobacterium volcanii Gly-tRNA-1A] | ||
S = 69.8 bits (76) | S = 69.8 bits (76) | ||
− | E-value | + | E-value = 1e-09 |
Query Coverage: 100% | Query Coverage: 100% | ||
Identities = 58/71 (81%) | Identities = 58/71 (81%) | ||
Line 18: | Line 21: | ||
[http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RZFNDE6014&log%24=nucltop&blast_rank=7&list_uids=43445 Halobacterium cutirubrum transfer RNA-Gly (GCC)] | [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RZFNDE6014&log%24=nucltop&blast_rank=7&list_uids=43445 Halobacterium cutirubrum transfer RNA-Gly (GCC)] | ||
S = 69.8 bits (76) | S = 69.8 bits (76) | ||
− | E-value | + | E-value = 1e-09 |
Query Coverage: 100% | Query Coverage: 100% | ||
Identities = 58/71 (81%) | Identities = 58/71 (81%) | ||
Gaps = 0/71 (0%) | Gaps = 0/71 (0%) | ||
Strand=Plus/Plus | Strand=Plus/Plus |
Revision as of 16:56, 31 August 2009
tRNA 644031717: tRNA-Val
Megablast results in the nr/nt database showed a match with the following statistics: Halobacterium cutirubrum transfer RNA-Val (GAC) S = 99.0 bits (53) E-value = 2e-18 Query Coverage: 100% Identities = 69/76 (90%) Gaps = 3/76 (3%) Strand=Plus/Plus
tRNA 644031821: tRNA-Gly
Blastn results in the nr/nt database showed the following matches: Halobacterium volcanii Gly-tRNA-1A S = 69.8 bits (76) E-value = 1e-09 Query Coverage: 100% Identities = 58/71 (81%) Gaps = 0/71 (0%) Strand=Plus/Plus Halobacterium cutirubrum transfer RNA-Gly (GCC) S = 69.8 bits (76) E-value = 1e-09 Query Coverage: 100% Identities = 58/71 (81%) Gaps = 0/71 (0%) Strand=Plus/Plus