Difference between revisions of "TRNA Genes Check List 2009"
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'''tRNA 644031888: tRNA-Met''' | '''tRNA 644031888: tRNA-Met''' | ||
− | Megablast results using the nr/nt database showed the following | + | Megablast results using the nr/nt database showed the following match: |
[http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9S0G9A5001S&log%24=nucltop&blast_rank=3&list_uids=149021 Haloferax volcanii (Halobacterium volcanii) elongator methionine-accepting transfer RNA-Met gene] | [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9S0G9A5001S&log%24=nucltop&blast_rank=3&list_uids=149021 Haloferax volcanii (Halobacterium volcanii) elongator methionine-accepting transfer RNA-Met gene] | ||
+ | S = 78.7 bits (42) | ||
+ | E-value = 7e-12 | ||
+ | Query Coverage: 29% | ||
+ | Identities = 42/42 (100%) | ||
+ | Gaps = 0/42 (0%) | ||
+ | Strand=Plus/Plus |
Revision as of 17:05, 31 August 2009
tRNA 644031717: tRNA-Val
Megablast results in the nr/nt database showed a match with the following statistics: Halobacterium cutirubrum transfer RNA-Val (GAC) S = 99.0 bits (53) E-value = 2e-18 Query Coverage: 100% Identities = 69/76 (90%) Gaps = 3/76 (3%) Strand=Plus/Plus
tRNA 644031821: tRNA-Gly
Blastn results in the nr/nt database showed the following matches: Halobacterium volcanii Gly-tRNA-1A S = 69.8 bits (76) E-value = 1e-09 Query Coverage: 100% Identities = 58/71 (81%) Gaps = 0/71 (0%) Strand=Plus/Plus Halobacterium cutirubrum transfer RNA-Gly (GCC) S = 69.8 bits (76) E-value = 1e-09 Query Coverage: 100% Identities = 58/71 (81%) Gaps = 0/71 (0%) Strand=Plus/Plus
tRNA 644031874: tRNA-Val
Megablast results using the nr/nt database gave the following match: Halobacterium volcanii Val-tRNA-1 S = 115 bits (62) E-value = 2e-23 Query Coverage: 100% Identities = 71/75 (94%) Gaps = 1/75 (1%) Strand=Plus/Plus
tRNA 644031888: tRNA-Met
Megablast results using the nr/nt database showed the following match: Haloferax volcanii (Halobacterium volcanii) elongator methionine-accepting transfer RNA-Met gene S = 78.7 bits (42) E-value = 7e-12 Query Coverage: 29% Identities = 42/42 (100%) Gaps = 0/42 (0%) Strand=Plus/Plus