Difference between revisions of "Missing RNA genes? 2009"
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| − | B). [http://genome.jgi-psf.org/cgi-bin/runAlignment?db=halmu&advanced=1 | + | B). [http://genome.jgi-psf.org/cgi-bin/runAlignment?db=halmu&advanced=1 Halomicrobium mukohataei genome portal] |
Revision as of 21:08, 31 August 2009
In looking for other RNA genes we did the following:
1). We looked at the two "other RNA" genes from last year's species (Halorhabdus utahensis AX-2, DSM 12940) and compared those sequences to our species entire genome in two different manners:
A). Blast2
and
B). Halomicrobium mukohataei genome portal
2). We also looked to ensure that all 20 amino acids had an associated tRNA gene encoded and all 20 amino acids were represented (although at varying frequencies).
In the future we would like to. . .
1). Compare our species to very closely related species that have been annotated for "other RNA genes"
2). Determine what "other RNA" genes we should be looking for in archae specifically.
