Difference between revisions of "TRNA Genes Check List 2009"

Revision as of 21:28, 31 August 2009

tRNA 644031717: 1888010..1888083 (-) (74bp): tRNA-Val

  Megablast results in the nr/nt database showed a match with the following statistics:
    Halobacterium cutirubrum transfer RNA-Val (GAC)    
     S = 99.0 bits (53)
     E-value = 2e-18
     Query Coverage: 100%
     Identities = 69/76 (90%)
     Gaps = 3/76 (3%)
     Strand=Plus/Plus

tRNA 644031821: 1980512..1980582 (+) (71bp): tRNA-Gly

 Blastn results in the nr/nt database showed the following matches:
   Halobacterium volcanii Gly-tRNA-1A
    S = 69.8 bits (76) 
    E-value = 1e-09
    Query Coverage: 100%
    Identities = 58/71 (81%)
    Gaps = 0/71 (0%)
    Strand=Plus/Plus

Halobacterium cutirubrum transfer RNA-Gly (GCC)   
    S = 69.8 bits (76)
    E-value = 1e-09
    Query Coverage: 100%
    Identities = 58/71 (81%)
    Gaps = 0/71 (0%)
    Strand=Plus/Plus

tRNA 644031874: 2032528..2032601 (-) (74bp): tRNA-Val

 Megablast results using the nr/nt database gave the following match:
  Halobacterium volcanii Val-tRNA-1
   S =  115 bits (62) 
   E-value = 2e-23
   Query Coverage: 100%
   Identities = 71/75 (94%)
   Gaps = 1/75 (1%)
   Strand=Plus/Plus

tRNA 644031888: 2048515..2048657 (+) (143bp): tRNA-Met

 Megablast results using the nr/nt database showed the following match:
  Haloferax volcanii (Halobacterium volcanii) elongator methionine-accepting transfer RNA-Met gene
   S = 78.7 bits (42)  
   E-value = 7e-12
   Query Coverage: 29%
   Identities = 42/42 (100%)
   Gaps = 0/42 (0%)
   Strand=Plus/Plus

tRNA 644031915: 2079098..2079168 (+) (71bp): tRNA-Pro

Megablast results using the nr/nt database showed the following match:
  Halobacterium volcanii Pro-tRNA-2
   S =  121 bits (65)  
   E-value = 4e-25
   Query Coverage: 100%
   Identities = 69/71 (97%)
   Gaps = 0/71 (0%)
   Strand=Plus/Plus

tRNA 644032052: 2201308..2201392 (-) (85bp) : tRNA-Leu

 Blastn results in the nr/nt database showed the following matches:
  Chain D, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex
   S = 89.7 bits (98)
   E-value = 2e-15
   Query Coverage: 98%
   Identities = 70/84 (83%)
   Gaps = 0/84 (0%)
   Strand=Plus/Plus

  Chain C, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex
   S = 89.7 bits (98)
   E-value = 2e-15
   Query Coverage: 98%
   Identities = 70/84 (83%)
   Gaps = 0/84 (0%)
   Strand=Plus/Plus
  
  H.volcanii Leu-tRNA-5
   S = 87.8 bits (96)
   E-value = 5e-15
   Query Coverage: 100%
   Identities = 70/85 (82%)
   Gaps = 0/85 (0%)
   Strand=Plus/Plus

tRNA 644032072: 2221071..2221144 (+) (74bp): tRNA-Ile

Megablast results using the nr/nt database showed the following match:
  Halobacterium volcanii Ile-tRNA-1
   S = 99.0 bits (53)
   E-value= 2e-18
   Query Coverage: 100%
   Identities = 67/74 (90%)
   Gaps = 0/74 (0%)
   Strand=Plus/Plus

tRNA 644032209: 2353219..2353291 (+)(73bp): tRNA-Pro

Megablast results using the nr/nt database showed the following match:
  Halobacterium volcanii Pro-tRNA-1
    S = 97.1 bits (52)
    E-value = 7e-18
    Query Coverage: 100%
    Identities = 68/75 (90%)
    Gaps = 4/75 (5%)
    Strand=Plus/Plus

tRNA 644032498: 2622662..2622733 (+)(72bp): tRNA-Thr

Megablast results using the nr/nt database showed the following matches:
 Halobacterium volcanii Thr-tRNA-1
   S = 111 bits (60)
   E-value = 3e-22
   Query Coverage = 100%
   Identities = 68/72 (94%)
   Gaps = 0/72 (0%)
   Strand = Plus/Plus

Halobacterium cutirubrum transfer RNA-Thr (GGU)
   S = 106 bits (57)
   E-value = 1e-20
   Query Coverage = 100%
   Identities = 67/72 (93%)
   Gaps = 0/72 (0%)
   Strand = Plus/Plus

tRNA 644032619: 2736702..2736774 (-)(73bp): tRNA-Pro

Megablast results using the nr/nt database showed the following match:
 Halobacterium volcanii Pro-tRNA-3
   S = 113 bits (61)
   E-value = 7e-23
   Query Coverage = 100%
   Identities = 69/73 (94%)
   Gaps = 0/73 (0%)
   Strand = Plus/Plus