Difference between revisions of "TRNA Genes Check List 2009"
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Identities = 69/73 (94%) | Identities = 69/73 (94%) | ||
Gaps = 0/73 (0%) | Gaps = 0/73 (0%) | ||
+ | Strand = Plus/Plus | ||
+ | |||
+ | '''tRNA 644032625: 2743979..2744049 (-)(71bp): tRNA-His''' | ||
+ | Blastn results using the nr/nt database showed the following matches: | ||
+ | [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9SG6VG5R01S&log%24=nuclalign&blast_rank=3&list_uids=174717 Halobacterium volcanii His-tRNA] | ||
+ | S = 93.3 bits (102) | ||
+ | E-value = 9e-17 | ||
+ | Query Coverage = 100% | ||
+ | Identities = 65/73 (89%) | ||
+ | Gaps = 2/73 (2%) | ||
+ | Strand = Plus/Plus | ||
+ | |||
+ | [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9SG6VG5R01S&log%24=nuclalign&blast_rank=6&list_uids=43446 Halobacterium cutirubrum transfer RNA-His (GUG)] | ||
+ | S = 77.0 bits (84) | ||
+ | E-value = 7e-12 | ||
+ | Query Coverage = 100% | ||
+ | Identities = 61/73 (83%) | ||
+ | Gaps = 2/73 (2%) | ||
Strand = Plus/Plus | Strand = Plus/Plus |
Revision as of 21:36, 31 August 2009
tRNA 644031717: 1888010..1888083 (-) (74bp): tRNA-Val
Megablast results in the nr/nt database showed a match with the following statistics: Halobacterium cutirubrum transfer RNA-Val (GAC) S = 99.0 bits (53) E-value = 2e-18 Query Coverage: 100% Identities = 69/76 (90%) Gaps = 3/76 (3%) Strand=Plus/Plus
tRNA 644031821: 1980512..1980582 (+) (71bp): tRNA-Gly
Blastn results in the nr/nt database showed the following matches: Halobacterium volcanii Gly-tRNA-1A S = 69.8 bits (76) E-value = 1e-09 Query Coverage: 100% Identities = 58/71 (81%) Gaps = 0/71 (0%) Strand=Plus/Plus Halobacterium cutirubrum transfer RNA-Gly (GCC) S = 69.8 bits (76) E-value = 1e-09 Query Coverage: 100% Identities = 58/71 (81%) Gaps = 0/71 (0%) Strand=Plus/Plus
tRNA 644031874: 2032528..2032601 (-) (74bp): tRNA-Val
Megablast results using the nr/nt database gave the following match: Halobacterium volcanii Val-tRNA-1 S = 115 bits (62) E-value = 2e-23 Query Coverage: 100% Identities = 71/75 (94%) Gaps = 1/75 (1%) Strand=Plus/Plus
tRNA 644031888: 2048515..2048657 (+) (143bp): tRNA-Met
Megablast results using the nr/nt database showed the following match: Haloferax volcanii (Halobacterium volcanii) elongator methionine-accepting transfer RNA-Met gene S = 78.7 bits (42) E-value = 7e-12 Query Coverage: 29% Identities = 42/42 (100%) Gaps = 0/42 (0%) Strand=Plus/Plus
tRNA 644031915: 2079098..2079168 (+) (71bp): tRNA-Pro
Megablast results using the nr/nt database showed the following match: Halobacterium volcanii Pro-tRNA-2 S = 121 bits (65) E-value = 4e-25 Query Coverage: 100% Identities = 69/71 (97%) Gaps = 0/71 (0%) Strand=Plus/Plus
tRNA 644032052: 2201308..2201392 (-) (85bp) : tRNA-Leu
Blastn results in the nr/nt database showed the following matches: Chain D, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex S = 89.7 bits (98) E-value = 2e-15 Query Coverage: 98% Identities = 70/84 (83%) Gaps = 0/84 (0%) Strand=Plus/Plus Chain C, The Crystal Structure Of Leucyl-Trna Synthetase And Trna(Leucine) Complex S = 89.7 bits (98) E-value = 2e-15 Query Coverage: 98% Identities = 70/84 (83%) Gaps = 0/84 (0%) Strand=Plus/Plus H.volcanii Leu-tRNA-5 S = 87.8 bits (96) E-value = 5e-15 Query Coverage: 100% Identities = 70/85 (82%) Gaps = 0/85 (0%) Strand=Plus/Plus
tRNA 644032072: 2221071..2221144 (+) (74bp): tRNA-Ile
Megablast results using the nr/nt database showed the following match: Halobacterium volcanii Ile-tRNA-1 S = 99.0 bits (53) E-value= 2e-18 Query Coverage: 100% Identities = 67/74 (90%) Gaps = 0/74 (0%) Strand=Plus/Plus
tRNA 644032209: 2353219..2353291 (+)(73bp): tRNA-Pro
Megablast results using the nr/nt database showed the following match: Halobacterium volcanii Pro-tRNA-1 S = 97.1 bits (52) E-value = 7e-18 Query Coverage: 100% Identities = 68/75 (90%) Gaps = 4/75 (5%) Strand=Plus/Plus
tRNA 644032498: 2622662..2622733 (+)(72bp): tRNA-Thr
Megablast results using the nr/nt database showed the following matches: Halobacterium volcanii Thr-tRNA-1 S = 111 bits (60) E-value = 3e-22 Query Coverage = 100% Identities = 68/72 (94%) Gaps = 0/72 (0%) Strand = Plus/Plus Halobacterium cutirubrum transfer RNA-Thr (GGU) S = 106 bits (57) E-value = 1e-20 Query Coverage = 100% Identities = 67/72 (93%) Gaps = 0/72 (0%) Strand = Plus/Plus
tRNA 644032619: 2736702..2736774 (-)(73bp): tRNA-Pro
Megablast results using the nr/nt database showed the following match: Halobacterium volcanii Pro-tRNA-3 S = 113 bits (61) E-value = 7e-23 Query Coverage = 100% Identities = 69/73 (94%) Gaps = 0/73 (0%) Strand = Plus/Plus
tRNA 644032625: 2743979..2744049 (-)(71bp): tRNA-His
Blastn results using the nr/nt database showed the following matches: Halobacterium volcanii His-tRNA S = 93.3 bits (102) E-value = 9e-17 Query Coverage = 100% Identities = 65/73 (89%) Gaps = 2/73 (2%) Strand = Plus/Plus Halobacterium cutirubrum transfer RNA-His (GUG) S = 77.0 bits (84) E-value = 7e-12 Query Coverage = 100% Identities = 61/73 (83%) Gaps = 2/73 (2%) Strand = Plus/Plus