Difference between revisions of "Unknown Protein (Sarah Pyfrom)"
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(→Blastp) |
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==Unknown Protein== | ==Unknown Protein== | ||
| − | '''ID Number:''' 644029936 | + | '''ID Number:''' [http://img.jgi.doe.gov/cgi-bin/geba/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=644029936 644029936] |
'''Sequence:''' ATGACCGGATACAGCGTGGTGGACACTTCGAGCGGCGGCGGAGACGCCTC | '''Sequence:''' ATGACCGGATACAGCGTGGTGGACACTTCGAGCGGCGGCGGAGACGCCTC | ||
| Line 22: | Line 22: | ||
''Begins with ATG'' | ''Begins with ATG'' | ||
| − | |||
== GC content == | == GC content == | ||
| Line 30: | Line 29: | ||
==Blastp== | ==Blastp== | ||
| − | + | '''Amino Acid Sequence (270aa):''' | |
| + | |||
| + | MTGYSVVDTSSGGGDASVPTNDWFVIATPFNEYIRFRPNTDQDNRGLTPE | ||
| + | YGVDWDTGSSSWNDRYPNDPGNRLKEIGRNDGTTGKITAHQSDGGGIQEG | ||
| + | DAVTYWLEYVDSGFALYFQREEADGNDGDGMIFFEEVTQLWDYDDAATHE | ||
| + | ANMIFGVAGHVADSIDYNPIKQVALDCRMAQSGSSPHHYAQGVANPDANY | ||
| + | NNYPYTDGVARSSSYRNASGADAVIGRYEMVLQERSGGDAAHRDTIQDAD | ||
| + | GNDLYTILNRDAASVALRMD | ||
| + | |||
| − | No truly significant hits. Loose similarities found in predicted signal transduction histidine kinase. Similarieties also found in hypothetical Schistosoma mansoni. 25% identity found with Pan troglodytes and human septin 11. | + | No truly significant hits. Loose similarities found in predicted signal transduction histidine kinase. Similarieties also found in hypothetical Schistosoma mansoni protein. 25% identity found with Pan troglodytes and human septin 11. |
==Blastn== | ==Blastn== | ||
No significant hits. | No significant hits. | ||
Latest revision as of 14:29, 8 September 2009
Contents
Unknown Protein
ID Number: 644029936
Sequence: ATGACCGGATACAGCGTGGTGGACACTTCGAGCGGCGGCGGAGACGCCTC AGTTCCCACGAACGACTGGTTCGTGATCGCCACTCCGTTCAACGAGTACA TCCGGTTCAGACCGAACACGGACCAAGATAACCGCGGGCTCACGCCCGAG TACGGCGTGGACTGGGACACCGGTTCGAGCTCGTGGAACGATCGCTACCC GAACGATCCCGGCAATCGTTTGAAGGAGATCGGCCGGAACGACGGGACCA CGGGTAAGATCACGGCTCACCAGTCGGACGGCGGCGGGATCCAAGAGGGA GACGCCGTGACGTACTGGTTGGAATACGTAGACTCCGGGTTCGCTCTCTA CTTCCAGAGAGAGGAGGCGGACGGCAACGACGGCGACGGCATGATCTTCT TCGAGGAGGTGACGCAACTGTGGGACTACGACGACGCCGCCACTCACGAG GCGAACATGATCTTCGGAGTCGCCGGGCACGTGGCGGACTCCATAGACTA CAACCCCATCAAACAGGTGGCTCTCGATTGCCGCATGGCACAGTCGGGAT CCAGCCCGCACCACTACGCACAGGGAGTCGCGAACCCAGACGCGAACTAC AACAACTACCCGTACACGGACGGCGTGGCTCGATCGAGCTCCTACCGCAA CGCCTCTGGCGCGGACGCCGTGATCGGGCGGTATGAGATGGTCCTCCAAG AGCGGAGCGGCGGAGACGCCGCTCACCGGGACACGATCCAAGACGCCGAC GGGAACGACCTGTACACAATCCTGAACAGGGACGCCGCGAGCGTGGCGCT CCGCATGGACTGA
Begins with ATG
GC content
This sequence's GC content is 62.7%. This is very similar to our species' GC content.
Blastp
Amino Acid Sequence (270aa):
MTGYSVVDTSSGGGDASVPTNDWFVIATPFNEYIRFRPNTDQDNRGLTPE YGVDWDTGSSSWNDRYPNDPGNRLKEIGRNDGTTGKITAHQSDGGGIQEG DAVTYWLEYVDSGFALYFQREEADGNDGDGMIFFEEVTQLWDYDDAATHE ANMIFGVAGHVADSIDYNPIKQVALDCRMAQSGSSPHHYAQGVANPDANY NNYPYTDGVARSSSYRNASGADAVIGRYEMVLQERSGGDAAHRDTIQDAD GNDLYTILNRDAASVALRMD
No truly significant hits. Loose similarities found in predicted signal transduction histidine kinase. Similarieties also found in hypothetical Schistosoma mansoni protein. 25% identity found with Pan troglodytes and human septin 11.
Blastn
No significant hits.
