Difference between revisions of "Karen's Assignment"

Revision as of 16:37, 17 September 2009

Potassium homeostasis

How does our species maintain potassium homeostasis?

In JGI's list of genes with predicted functions, I found the following 10 genes related to K+:
K+ transport system, NAD-binding component
K+ transport system, NAD-binding component
K+ transport system, NAD-binding component
Kef-type K+ ransport system, predicted NAD-binding component
Kef-type K+ transport system, membrane component
K+ transport system, NAD-binding component
Trk-type K+ transport system, membrane component
K+ transport system, NAD-binding component
K+ transport system, NAD-binding component
NhaP-type Na+(K+)/H+ antiporter

I found no genes with predicted functions that are associated with Cl- from JGI

Are the genes for this process highly conserved among halophiles?

Is potassium homeostasis related to our species ability to survive/thrive in high salinity environments? How?

I am beginning to understand potassium homeostasis and how it may be useful to our organism to survive in high salt concentrations by first researching how other known species utilize this mechanism. In a paper by Strahl and Greie, the Halobacterium salinarum species use of potassium homeostasis to maintain life in a high salinity environment is described. Apparently these organisms maintain life in such conditions by creating an equimolar condition within their cytoplasm. KCl is the preferred ion to create this equal osmolality for this halobacterium resulting in osmotic equilibrium with the surrounding environment. The K+ ion enters the cell by both passive transport mechanisms as well as active transport mechanisms. A gene, kdpFABC, has been discovered in this organism that codes for homologs of a bacterial APT-driven K+ uptake system. Deletion of this gene is detrimental to organism survival in limiting K+ conditions. This paper also mentions that this mechanism is unique to this and another species of halobacterium because other halophiles utilize organic solutes to equalize osmotic pressures in high salinity environments. I must determine whether or not potassium homeostasis could be a mechanism of maintaining osmotic equilibrium in our species.

A paper by Oren et al. describes another species, Salinibacter ruber, that appears to be capable of surviving in high salinity environments due to the uptake of high concentrations of potassium. The finding that potassium homeostasis seems to be the mechanism of maintaining life in a high salinity environment was determined by measuring K+, Cl+, glutamate, glycine betaine, and N-alpha-acetyllysine concentrations within the cytoplasm. High amounts of K+ and Cl+ were found within the cytoplasm but low amounts of glutamate, glycine betaine, and N-alpha-acetyllysine were discovered. These three organic solutes are often associated with maintaining osmotic equilibrium in archaic halophiles that exist in high salinity environments. It is unusual that this species does not utilize these organic solutes to maintain homeostasis but instead seems to be utilizing the inorganic molecule KCl. This paper provides another example of potassium concentrations being utilized to maintain life in high salinity environments. I need to determine if our species is using this inorganic molecule or the more common organic molecules to maintain osmotic balance in a high salinity environment.