Difference between revisions of "JP Resources"
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[[Julia Preziosi]] | [[Julia Preziosi]] | ||
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| + | Python Codes: | ||
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| + | making a dictionary of POUF names | ||
| + | [[File:POUFdict.txt]] | ||
| + | |||
| + | (uses the file: [[File:refseqpouf.txt]] ) | ||
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| + | renaming the POUFs in the excel files (not needed) | ||
| + | [[File:renamer.txt]] | ||
| + | |||
| + | R Code: | ||
| + | 1-1000 expression | ||
| + | 0.01 Qval with heatmaps | ||
| + | [[File:clustering1.txt]] | ||
| + | |||
| + | 1-1000 expression | ||
| + | 0.001 Qval with heatmaps | ||
| + | [[File:clustering2.txt]] | ||
| + | |||
| + | Stripping repeat GO IDs from contigs and generating list of all IDs | ||
| + | [[File:GO_term_no_repeat_and_list_PTHONSCRIPT.txt]] | ||
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| + | Sample input file [[File:sample1.txt]] | ||
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| + | Sample output file 1 [[File:sample2.txt]] | ||
| + | |||
| + | Sample output file 2 [[File:sample3.txt]] | ||
Latest revision as of 18:15, 17 March 2016
Python Codes:
making a dictionary of POUF names File:POUFdict.txt
(uses the file: File:Refseqpouf.txt )
renaming the POUFs in the excel files (not needed) File:Renamer.txt
R Code: 1-1000 expression 0.01 Qval with heatmaps File:Clustering1.txt
1-1000 expression 0.001 Qval with heatmaps File:Clustering2.txt
Stripping repeat GO IDs from contigs and generating list of all IDs File:GO term no repeat and list PTHONSCRIPT.txt
Sample input file File:Sample1.txt
Sample output file 1 File:Sample2.txt
Sample output file 2 File:Sample3.txt
