Difference between revisions of "Time of bloom"

From GcatWiki
Jump to: navigation, search
Line 10: Line 10:
 
<br/>Overall pathway for the time of bloom from [http://www.sciencedirect.com/science/article/pii/S0168952510001873 Wellmer and Riechmann, 2010] and [http://www.sciencedirect.com/science/article/pii/S0958166910002284 Ferrier et al., 2011].
 
<br/>Overall pathway for the time of bloom from [http://www.sciencedirect.com/science/article/pii/S0168952510001873 Wellmer and Riechmann, 2010] and [http://www.sciencedirect.com/science/article/pii/S0958166910002284 Ferrier et al., 2011].
 
<br/><br/>Other Pathways: [http://dev.biologists.org/content/131/16/3829/F1.expansion.html Pathway 1]; [http://pcp.oxfordjournals.org/content/46/8/1175/F7.expansion Pathway 2]; [http://dev.biologists.org/content/136/20/3379/F3.expansion.html Pathway 3]; [http://5e.plantphys.net/article.php?ch=1&id=375 Pathway 4]; [http://www.plantcell.org/content/16/suppl_1/S18/F2.expansion Pathway 5]; [http://openi.nlm.nih.gov/detailedresult.php?img=3039610_1471-2164-12-63-6&query=the&fields=all&favor=none&it=none&sub=none&uniq=0&sp=none&req=4&simResults=f0a0c433%20f0a1c418%20f0a2c0%20f1a0c161%20f2a0c444%20f2a1c438%20f3a0c224%20f4a0c18%20f4a1c1%20f4a2c23&npos=37&prt=2 Pathway 6]; [http://openi.nlm.nih.gov/detailedresult.php?img=3049749_2041-9139-2-4-1&query=the&fields=all&favor=none&it=none&sub=none&uniq=0&sp=none&req=4&simCollection=1187896_1471-2202-6-48-3&npos=55&prt=3 Pathway 7]; [http://www.sciencedirect.com/science/article/pii/S1369526611001440 Pathway 8]; [http://www.pnas.org/content/107/39/17029/F6.expansion.html Pathway 9]; [http://www.sciencedirect.com/science/article/pii/S0168952510001873 Pathway 10]; [http://www.sciencedirect.com/science/article/pii/S1084952108000566 Pathway 11]; [http://www.sciencedirect.com/science/article/pii/S1360138504002705 Pathway 12]; [http://www.mpipz.mpg.de/305695/Project_1 Pathway 13]; [http://www.sciencedirect.com/science/article/pii/S009286740600571X Pathway 14]; [http://www.sciencedirect.com/science/article/pii/S1369526602000146 Pathway 15]; [http://www.els.net/WileyCDA/ElsArticle/refId-a0002053.html Pathway 16]; [http://www.sciencedirect.com/science/article/pii/S0958166905000273 Pathway 17]; [http://www.sciencedirect.com/science/article/pii/S0958166910002284 Pathway 18]
 
<br/><br/>Other Pathways: [http://dev.biologists.org/content/131/16/3829/F1.expansion.html Pathway 1]; [http://pcp.oxfordjournals.org/content/46/8/1175/F7.expansion Pathway 2]; [http://dev.biologists.org/content/136/20/3379/F3.expansion.html Pathway 3]; [http://5e.plantphys.net/article.php?ch=1&id=375 Pathway 4]; [http://www.plantcell.org/content/16/suppl_1/S18/F2.expansion Pathway 5]; [http://openi.nlm.nih.gov/detailedresult.php?img=3039610_1471-2164-12-63-6&query=the&fields=all&favor=none&it=none&sub=none&uniq=0&sp=none&req=4&simResults=f0a0c433%20f0a1c418%20f0a2c0%20f1a0c161%20f2a0c444%20f2a1c438%20f3a0c224%20f4a0c18%20f4a1c1%20f4a2c23&npos=37&prt=2 Pathway 6]; [http://openi.nlm.nih.gov/detailedresult.php?img=3049749_2041-9139-2-4-1&query=the&fields=all&favor=none&it=none&sub=none&uniq=0&sp=none&req=4&simCollection=1187896_1471-2202-6-48-3&npos=55&prt=3 Pathway 7]; [http://www.sciencedirect.com/science/article/pii/S1369526611001440 Pathway 8]; [http://www.pnas.org/content/107/39/17029/F6.expansion.html Pathway 9]; [http://www.sciencedirect.com/science/article/pii/S0168952510001873 Pathway 10]; [http://www.sciencedirect.com/science/article/pii/S1084952108000566 Pathway 11]; [http://www.sciencedirect.com/science/article/pii/S1360138504002705 Pathway 12]; [http://www.mpipz.mpg.de/305695/Project_1 Pathway 13]; [http://www.sciencedirect.com/science/article/pii/S009286740600571X Pathway 14]; [http://www.sciencedirect.com/science/article/pii/S1369526602000146 Pathway 15]; [http://www.els.net/WileyCDA/ElsArticle/refId-a0002053.html Pathway 16]; [http://www.sciencedirect.com/science/article/pii/S0958166905000273 Pathway 17]; [http://www.sciencedirect.com/science/article/pii/S0958166910002284 Pathway 18]
−
 
−
====Flower Meristem Identity====
 
−
Primary Genes: AG, AP1, AP2, CAL, FUL, LFY, UFO
 
−
<br/>Other Genes: AGL24, AP3, PI
 
−
<br/>Purpose: These genes "control the identity that a meristem will adopt. These meristem identity genes are activated in response to developmental and environmental cues ... [and are essentially the] master regulators that control the entire floral initiation process."
 
−
<br/> Sources: [http://dev.biologists.org/content/131/16/3829 Henderson and Dean, 2004]; [http://labs.biology.ucsd.edu/yanofsky/flower/flower_meristem_identity.htm UC San Diego]; [http://www.plantcell.org/content/9/3/393 Mizukami and Ma, 1997]; [http://www3.botany.ubc.ca/haughn/haughn%20manuscripts/The%20making%20of%20a%20flower%20F99.pdf Pidkowich et al., 1999]
 
−
 
−
====Floral Pathway Integrators====
 
−
Primary Genes: FT, LFY, SOC1, TSF
 
−
<br/> Purpose: "The multiple pathways quantitatively regulate an overlapping set of common targets, the floral pathway integrators, whose activities convert the shoot apical meristem to a reproductive fate."
 
−
<br/> Sources: [http://dev.biologists.org/content/131/16/3829 Henderson and Dean, 2004]; [http://www.ncbi.nlm.nih.gov/pubmed/16099979 Abe et al., 2005]; [http://www.ncbi.nlm.nih.gov/pubmed/15951566 Yamaguchi et al., 2005]; [http://www.plantcell.org/content/16/suppl_1/S18.full Boss et al., 2004]
 
  
  

Revision as of 04:58, 14 February 2013

Overall Pathway

Henderson and Dean Pathway.jpeg
Overall pathway for the time of bloom from Henderson and Dean, 2004.



Error creating thumbnail: Unable to save thumbnail to destination


Overall pathway for the time of bloom from Schneitz, 2009.

Flowering Pathway 2010 2011.jpg
Overall pathway for the time of bloom from Wellmer and Riechmann, 2010 and Ferrier et al., 2011.

Other Pathways: Pathway 1; Pathway 2; Pathway 3; Pathway 4; Pathway 5; Pathway 6; Pathway 7; Pathway 8; Pathway 9; Pathway 10; Pathway 11; Pathway 12; Pathway 13; Pathway 14; Pathway 15; Pathway 16; Pathway 17; Pathway 18


Genes Involved

Abbreviation Name DNA Sequence Available At
AG Agamous NCBI
AGL19 Agamous-Like 19 NCBI
AGL24 Agamous-Like 24 NCBI
AP1 Apetala 1 NCBI
AP2 Apetala 2 NCBI
AP3 Apetala 3 NCBI
ARP6 Actin-Related Protein 6 NCBI
ART1 Aerial Rosette 1 UniProt (AA)
CAL Cauliflower NCBI
CCA1 Circadian Clock Associated 1 NCBI
CLF Curly Leaf NCBI
CO Constans NCBI
CRY1 Cryptochrome 1 NCBI
CRY2 Cryptochrome 2 NCBI
CRY3 Cryptochrome 3 NCBI
EBS Early Bolting in Short Days NCBI
EFS Early Flowering in Short Days NCBI
ELF3 Early Flowering 3 NCBI
ELF4 Early Flowering 4 NCBI
ELF7 Early Flowering 7 NCBI
ELF8 Early Flowering 8 NCBI
EMF1 Embryonic Flower 1 NCBI
EMF2 Embryonic Flower 2 NCBI
ESD4 Early Under Short Days 4 NCBI
FCA Flowering Time Control Alpha NCBI
FD FD NCBI
FES1 Frigida-Essential 1 NCBI
FIE Fertilization-Independent Endosperm NCBI
FKF1 Flavin-Binding/Kelch Repeat NCBI
FLC Flowering Locus C NCBI
FLD Flowering Locus D NCBI
FLK Flowering Locus K NCBI
FLM / MAF1 / AGL27 Flowering Locus M NCBI
FPA Flowing Time Control NCBI
FRI Frigida-Like NCBI
FRL1 Frigida-Like 1 NCBI
FRL2 Frigida-Like 2 NCBI
FT Flowering Locus T NCBI
FUL / AGL8 Fruitfull NCBI
FVE Nucleosome/Chromatin Assembly Factor Group C NCBI
FY Flowing Time Control NCBI
GAI Gibberellic Acid Insensitive NCBI
GI Gigantea NCBI
Hd1 Histone Deacetylase 1 NCBI
LD Luminidependens NCBI
LFR Leaf and Flower Related NCBI
LFY Leafy NCBI
LHP1 Like Heterochromatin Protein 1 NCBI
LHY Late Elongated Hypocotyl NCBI
LMI1 Late Meristem Identity 1 NCBI
LUG Leunig NCBI
MAF2 / AGL31 MADS Affecting Flowering 2 NCBI
MAF3 MADS Affecting Flowering 3 NCBI
MAF4 MADS Affecting Flowering 4 NCBI
MAF5 MADS Affecting Flowering 5 NCBI
MIR172A MicroRNA 172 A NCBI
MIR172B MicroRNA 172 B NCBI
PAF1 Proteasome Subunit Alpha NCBI
PFT1 Phytochrome and Flowering Time 1 NCBI
PHYA Phytochrome A NCBI
PHYB Phytochrome B NCBI
PHYC Phytochrome C NCBI
PHYE Phytochrome E NCBI
PI Pistillata NCBI
PIE1 Photoperiod-Independent Early Flowering 1 NCBI
PIF4 Phytochrome Interacting Factor 4 NCBI
PNF Pound-Foolish NCBI
PNY Pennywise NCBI
RGA Repressor of GA NCBI
SAP18 SIN3 Associated Polypeptide P18 NCBI
SEP3 Sepallata NCBI
SEU Seuss NCBI
SMZ Schlafmutze NCBI
SNZ Schnarchzapfen NCBI
SOC1 / AGL20 Supressor of Overexpression of Constans 1 NCBI
SPL3 Squamosa Promoter-Binding-Like Protein 3 NCBI
SPL9 Squamosa Promoter-Binding-Like Protein 9 NCBI
SPY Spindly NCBI
STM Shoot Meristemless NCBI
SVP / AGL22 Short Vegetative Phase NCBI
SYD Splayed NCBI
TEM1 Tempranillo 1 NCBI
TEM2 Tempranillo 2 NCBI
TFL1 Terminal Flower 1 NCBI
TFL2 Terminal Flower 2 NCBI
TOC1 Timing of CAB Expression NCBI
TOE1 Target of EAT 1 NCBI
TOE2 Target of EAT 2 NCBI
TOE3 Target of EAT 3 NCBI
TSF Twin Sister of FT NCBI
UFO Unusual Floral Organs NCBI
VIN3 Vernalization Insensitive 3 NCBI
VIP Vernalization Independence NCBI
VIP3 Vernalization Independence 3 NCBI
VIP4 Vernalization Independence 4 NCBI
VRN1 Vernalization 1 NCBI
VRN2 Vernalization 2 NCBI
ZTL Zeitlupe NCBI
Retrieved from "http://gcat.davidson.edu/GcatWiki/index.php?title=Time_of_bloom&oldid=15724"