Difference between revisions of "JP Feb 16 16"

Revision as of 19:26, 16 February 2016

Wrote a python code to rename the raw fastq files. (at bottom of page)

Ran Blast2Go using NCBI database and the following parameters (default):

@@ Line 4: / Line 4: @@
 Ran Blast2Go using NCBI database and the following parameters (default):
-<nowiki>
-#file_name = raw_input('Enter file name: ').strip()
-file_name = 'first80.txt'
-Seqlist= []
-f = open(file_name)
-for pos, line in enumerate(f):
-    if pos % 4 == 1:
-        Seqlist.append(line)
-f.close()
-NewSeqlist = []
-ID = 1
-for seq in Seqlist:
-    seq = ">" + str(ID) + "\n" + seq
-    NewSeqlist.append(seq)
-    ID += 1
-print NewSeqlist
-newfilename = "renamed_" + file_name
-with open (newfilename, 'w') as newfile:
-    for seq in NewSeqlist:
-        newfile.write(seq)
-</nowiki>