Difference between revisions of "Protein of unknown function (DUF861) (Claudia M. Carcelen)"
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Clcarcelen (talk | contribs) (→GC Content) |
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=GC Content= | =GC Content= | ||
| − | The GC content for this gene is 70% and the GC content for our species' genome is 66%. | + | The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility of an outside gene. There may however exist paralogs and orthologs to this gene. |
=Genome Portal Results with Other Halophiles= | =Genome Portal Results with Other Halophiles= | ||
Revision as of 03:01, 8 September 2009
Contents
Protein of unknown function (DUF861) (Claudia M. Carcelen) 644031442
Blastn Search
Megablast and blastn gave no results other than the source genome (Halomicrobium mukohataei). When I ran the blast searching for more dissimilar (discontiguous megablast), the results were not helpful - they were either complete genomes or not statistically significant.
Blastx Search
This search provided a number of results, however many were hypothetical proteins. A number of results were cupin conserved barrel domain proteins, however I was unable to determine if any of these results were relevant.
GC Content
The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility of an outside gene. There may however exist paralogs and orthologs to this gene.
