Difference between revisions of "CRISPR-associated Proteins"
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| − | RAST and JGI agree that our genome has 6 CRISPR-associated (cas) proteins: | + | '''RAST and JGI agree that our genome has 6 CRISPR-associated (cas) proteins: |
| − | + | ''' | |
1) Cas1 | 1) Cas1 | ||
| Line 13: | Line 13: | ||
6) TM1801 family | 6) TM1801 family | ||
| − | After comparing the conserved proteins between our genome and the other 9 genomes, I found these cas-proteins were conserved: | + | |
| + | '''After comparing the conserved proteins between our genome and the other 9 genomes, I found these cas-proteins were conserved:''' | ||
H. sinaiiensis shares all 6 cas-proteins with H. mukohataei. | H. sinaiiensis shares all 6 cas-proteins with H. mukohataei. | ||
Revision as of 17:04, 5 November 2009
RAST and JGI agree that our genome has 6 CRISPR-associated (cas) proteins: 1) Cas1
2) Cas2
3) Cas3(helicase)
4) Cas4a (RecB family exonuclease)
5) TM1800 family
6) TM1801 family
After comparing the conserved proteins between our genome and the other 9 genomes, I found these cas-proteins were conserved:
H. sinaiiensis shares all 6 cas-proteins with H. mukohataei.
H. vallismortis shares all cas-proteins except for Cas4.
H. californiae shares all cas-proteins except for Cas4.
H. denitrificans shares all 6 cas-proteins with H. mukohataei.
H. mediteranei shares all 6 cas-proteins with H. mukohataei.
H. volcanii shares only Cas2, Cas3 and Cas4 with H. mukohataei.
H. sulfurifontis shares only Cas1, Cas3 and TM1800.
H. mucosum shares all 6 cas-proteins with H. mukohataei.
H. utahensis shares all 6 cas-proteins with H. mukohataei.
