Difference between revisions of "Burkholderia phage Virus Hit from Spacer 14 in Crispr One: Blast Alignment to Other Halophiles"
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Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364 | Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364 | ||
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| − | Haloarula californiae | + | '''Haloarula californiae''': downloaded this sequence of the large contigs from the halophile genome site with the eight other species on it |
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| − | Haloferax | + | Haloferax volcanii= |
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Haloarcula sinaiiensis | Haloarcula sinaiiensis | ||
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Haloarcula vallismortis | Haloarcula vallismortis | ||
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| + | Haloferax mediterranei | ||
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| + | Haloferax mucosum | ||
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| + | Haloferax sulfurifontis | ||
Revision as of 16:41, 17 November 2009
Accession Number of this Virus= EU307292.1
What species does this virus infect? Blastn against nr/nt database. . .
WHY DOESNT OUR SPECIES SHOW UP?????????????
Lots of bacteria and other bacteriophages it infects
The bacterial species it infects were similar to the bacterial species that came up with hits in the our species spacer blast results, but those similarities were in genes. . .
Blasted against other halophiles to determine if other halophiles have segments of this viral genome in its spacers and genome in general. . .
Halorhabdus utahensis: Accession number determined from NCBI: NC_013158.1
Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364
Haloarula californiae: downloaded this sequence of the large contigs from the halophile genome site with the eight other species on it
Haloferax volcanii=
Haloarcula sinaiiensis
Haloarcula vallismortis
Haloferax mediterranei
Haloferax mucosum
Haloferax sulfurifontis
