Difference between revisions of "Burkholderia phage Virus Hit from Spacer 14 in Crispr One: Blast Alignment to Other Halophiles"

Revision as of 17:00, 17 November 2009

Accession Number of this Virus= EU307292.1- only partial sequence!!!!!!! thats just what we have

What species does this virus infect? Blastn against nr/nt database. . .

Our species does not show up because different parameters for short sequence when we blasted the spacer

Blasted against other halophiles to determine if other halophiles have segments of this viral genome in its spacers and genome in general. . .

Halorhabdus utahensis: Accession number determined from NCBI: NC_013158.1

Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364

Haloarula californiae: downloaded this sequence of the large contigs from the halophile genome site with the eight other species on it

Haloferax volcanii=

Haloarcula sinaiiensis

Haloarcula vallismortis

Haloferax mediterranei

Haloferax mucosum

Haloferax sulfurifontis

@@ Line 3: / Line 3: @@
 '''What species does this virus infect'''? Blastn against nr/nt database. . .
-WHY DOESNT OUR SPECIES SHOW UP?????????????
+[[Image:virus2.jpg]]
-Lots of bacteria and other bacteriophages it infects
+Our species does not show up because different parameters for short sequence when we blasted the spacer
-The bacterial species it infects were similar to the bacterial species that came up with hits in the our species spacer blast results, but those similarities were in genes. . .