Difference between revisions of "Burkholderia phage Virus Hit from Spacer 14 in Crispr One: Blast Alignment to Other Halophiles"
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Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364 | Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364 | ||
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Revision as of 02:35, 18 November 2009
Accession Number of this Virus= EU307292.1- only partial sequence!!!!!!! thats just what we have
What species does this virus infect? Blastn against nr/nt database. . .
Our species does not show up because different parameters for short sequence when we blasted the spacer
Blasted against other halophiles to determine if other halophiles have segments of this viral genome in its spacers and genome in general. . .
Halorhabdus utahensis: Accession number determined from NCBI: NC_013158.1
Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364
Haloarula californiae: downloaded this sequence of the large contigs from the halophile genome site with the eight other species on it
Haloferax volcanii=
Haloarcula sinaiiensis
Haloarcula vallismortis
Haloferax mediterranei
Haloferax mucosum
Haloferax sulfurifontis
