Difference between revisions of "Mike N"

Revision as of 08:58, 15 March 2012

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Crytochrome 1 (CRY1)

-Scaffold 000331 122,000-129,000

tc (X5) at 120,300 product size: 251bp forward primer: CATTTTGGGACAGAGGGAGTAG reverse primer: CAGTAACCAACATGCAAAAGGA

atc (X4) at 122,800 product size: 258bp forward primer: TCCAATACCACTTTCTTCACCC reverse primer: GATAATAGGGCAGAAGTTCCGA

-Scaffold 01561 18,500-23,800

-Scaffold 00649 28,300-28,600

Phytochrome A (PHYA)

-Scaffold 03861' 3,400-5,800

Unfortunately, the scaffold length is only 7,403bp long, so no adequate SSRs were detected and appropriate primers could not be found.

Gigantea (GI)

-Scaffold 00100 192,000-200,600

Cryptochrome 2 (CRY2)

-Scaffold 00649 16,000-30,000

-Scaffold 01561 20,000-21,000

Phytochrome B (PHYB)

-Scaffold 00751 84,000-89,200

aga (X8) at 81,900 product size: 265bp forward primer: CCCGAAAATACCCTTTCTCTCT reverse primer: GGCAATTACCAATTACGTGTCA

ag (X10) at 92,400 product size: 262bp forward primer: AAGAGGGGTAGACCAAAATTGA reverse primer: AATTTCACTCCAACCAAGAAGG

Constans (CO)

-Scaffold 01843 40,900-41,000

Constitutive Photomorphogenisis 1 (COP1)

-Scaffold 00752 17,000-24,800

ga (X6) at 14,800 product size: 277bp forward primer: CTCCAACTCTGAACTGATTCCC reverse primer: GAAACGCGTCCTTGATTATCTC

tta (X4) at 25,400 product size: 276bp forward primer: CGTACGAAGATTTGTTCAGCAG reverse primer: GCTACGCAAACATGATGACTTC

-Scaffold 00111 154,000-162,000

ct (X9) at 144,800 product size: 164bp forward primer: GTGGAAAATGTAAAGACACGCA reverse primer: AAAGCTTTCTAACCTCCGATCC

at (X5) at 165,400 product size: 300bp forward primer: CTTTCTTCCACTCAAGCCCTAA reverse primer: GAATCTTGTGCACCACACACTT

Cycling DOF Factor (CDF)

-Scaffold 00079 69,000-69,200

-Scaffold 00651 19,900-20,100

-Scaffold 01102 51,500-51,700

-Scaffold 00292 195,200-195,300

Apetala 1 (AP1)

-Scaffold 00988 71,100-71,200

Flowering Locus T (FT)

-Scaffold 00357 56,800-58,200

Leafy (LFY)

No ortholog could be found in Vaccinium when the Arabidopsis sequence was used as the query.