Difference between revisions of "Time of bloom"

Revision as of 19:44, 14 February 2013

To Do

Note all Arabidopsis genes in File:Jung 207 Arabidopsis Flowering Genes.pdf from Jung et al., 2012.
Look for strawberry orthologs of Arabidopsis genes, such as in Mouhu et al., 2009.

Arabidopsis Flowering Pathway (2004-Present)

Overall pathway for the time of bloom from Henderson and Dean, 2004.

Overall pathway for the time of bloom from Schneitz, 2009.


"The Arabidopsis floral transition network has been delineated as a result of extensive genetic analyses (depicted in a), but genome-wide studies have uncovered new molecular interactions and highlighted the role of AP1 as both a molecular switch and a network hub (shown in b)."
Overall pathway for the time of bloom from Wellmer and Riechmann, 2010 and Ferrier et al., 2011.


"Soybean genes marked with * are those that share the same clade with Arabidopsis genes but have not been investigated so far as flowering genes ... Arrows show promoting effects, T-bars show repressing effects. Environmental cues are shown as lower case letters in square boxes; ‘v’ is extended cold (vernalization); ‘ld’ is long days; ‘sd’ is short days; ‘am’ is ambient (non-vernalizing) temperature. Genes are shown in italics and proteins in non-italics in ovals. ‘Pfr’ indicates Pfr phytochrome signaling. Arabidopsis genes assigned to specific pathways are color-coded (photoperiod pathway in green, vernalization in blue and autonomous pathway in purple). Flowering pathway integrators are shown in red. Triple headed arrows indicate activation by red or blue light."
Overall pathway for the time of bloom from Jung et al., 2012.

All Arabidopsis Flowering Pathways

Henderson and Dean, 2004; Yamaguchi et al., 2005; Liu et al., 2009; Taiz and Zeiger, 2010; Boss et al., 2004; Zhang et al., 2011; Ballerini and Kramer, 2011; Posé et al., 2012; Kim and Sung, 2010; Wellmer and Riechmann, 2010; Farrona et al., 2008; He and Amasino, 2005; Max Planck Institute for Plant Breeding Research; Bäurle and Dean, 2006; Sung et al., 2003; Schneitz, 2009; Amasino, 2005; Ferrier et al., 2011; Izawa et al., 2003; Jung et al., 2012

Arabidopsis Flowering Genes

Note: All genes are compiled from Jung et al., 2012. Formatting is the same as Jung et al., 2012 where a * indicates 1 of "24 Arabidopsis genes, which had not been previously investigated for their roles in flowering, [that] belong to [ortholog groups] with known Arabidopsis flowering genes." Moreover, for pathways, "Am: Ambient temperature pathway, Au: Autonomous pathway, FPI: Flowering Pathway Intergrators, L: Light signaling pathway, MI: Meristem Identity, V: Vernalization pathway."