Difference between revisions of "Time of bloom"

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! <i>Arabidopsis</i> Locus !! Other Names !! AA Sequence !! Pathway !! Potential Ortholog
 
! <i>Arabidopsis</i> Locus !! Other Names !! AA Sequence !! Pathway !! Potential Ortholog
 
|-
 
|-
−
| AT1G01060||LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1||[http://arabidopsis.org/servlets/TairObject?id=137165&type=locus TAIR]||L||
+
| AT1G01060||LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1||[http://arabidopsis.org/servlets/TairObject?id=137165&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT1G02580||EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEA, MEDEA, SDG5, SET DOMAIN-CONTAINING PROTEIN 5||[http://arabidopsis.org/servlets/TairObject?id=136450&type=locus TAIR]||Au, V||
+
| AT1G02580||EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEA, MEDEA, SDG5, SET DOMAIN-CONTAINING PROTEIN 5||[http://arabidopsis.org/servlets/TairObject?id=136450&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
 
|-
 
|-
−
| AT1G04400||AT-PHH1, ATCRY2, CRY2, CRYPTOCHROME 2, FHA, PHH1||[http://arabidopsis.org/servlets/TairObject?id=28374&type=locus TAIR]||L||
+
| AT1G04400||AT-PHH1, ATCRY2, CRY2, CRYPTOCHROME 2, FHA, PHH1||[http://arabidopsis.org/servlets/TairObject?id=28374&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT1G09570||ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A||[http://arabidopsis.org/servlets/TairObject?id=27545&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/A5B9C2 Grape]
+
| AT1G09570||ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A||[http://arabidopsis.org/servlets/TairObject?id=27545&type=locus TAIR]||Light signaling pathway||[http://www.uniprot.org/uniprot/A5B9C2 Grape]
 
|-
 
|-
−
| AT1G13260||EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, RELATED TO ABI3/VP1 1||[http://arabidopsis.org/servlets/TairObject?id=137721&type=locus TAIR]||L||
+
| AT1G13260||EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, RELATED TO ABI3/VP1 1||[http://arabidopsis.org/servlets/TairObject?id=137721&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT1G20330||COTYLEDON VASCULAR PATTERN 1, CVP1, FRILL1, FRL1, SMT2, STEROL METHYLTRANSFERASE 2||[http://arabidopsis.org/servlets/TairObject?id=27665&type=locus TAIR]||V||
+
| AT1G20330||COTYLEDON VASCULAR PATTERN 1, CVP1, FRILL1, FRL1, SMT2, STEROL METHYLTRANSFERASE 2||[http://arabidopsis.org/servlets/TairObject?id=27665&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT1G22770||FB, GI, GIGANTEA||[http://arabidopsis.org/servlets/TairObject?id=136959&type=locus TAIR]||L||
+
| AT1G22770||FB, GI, GIGANTEA||[http://arabidopsis.org/servlets/TairObject?id=136959&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT1G25560||EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1||[http://arabidopsis.org/servlets/TairObject?id=30061&type=locus TAIR]||L||
+
| AT1G25560||EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1||[http://arabidopsis.org/servlets/TairObject?id=30061&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT1G26790||||[http://arabidopsis.org/servlets/TairObject?id=137136&type=locus TAIR]||L||
+
| AT1G26790||||[http://arabidopsis.org/servlets/TairObject?id=137136&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT1G29160||||[http://arabidopsis.org/servlets/TairObject?id=29883&type=locus TAIR]||L||
+
| AT1G29160||||[http://arabidopsis.org/servlets/TairObject?id=29883&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT1G30970||SUF4, SUPPRESSOR OF FRIGIDA4||[http://arabidopsis.org/servlets/TairObject?id=28096&type=locus TAIR]||V||
+
| AT1G30970||SUF4, SUPPRESSOR OF FRIGIDA4||[http://arabidopsis.org/servlets/TairObject?id=28096&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT1G31814||FRIGIDA LIKE 2, FRL2||[http://arabidopsis.org/servlets/TairObject?id=226970&type=locus TAIR]||V||
+
| AT1G31814||FRIGIDA LIKE 2, FRL2||[http://arabidopsis.org/servlets/TairObject?id=226970&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT1G47250||20S PROTEASOME ALPHA SUBUNIT F2, PAF2||[http://arabidopsis.org/servlets/TairObject?id=30983&type=locus TAIR]||V||
+
| AT1G47250||20S PROTEASOME ALPHA SUBUNIT F2, PAF2||[http://arabidopsis.org/servlets/TairObject?id=30983&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT1G53090||SPA1-RELATED 4, SPA4||[http://arabidopsis.org/servlets/TairObject?id=31031&type=locus TAIR]||L||
+
| AT1G53090||SPA1-RELATED 4, SPA4||[http://arabidopsis.org/servlets/TairObject?id=31031&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT1G62830||ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATLSD1, ATSWP1, LDL1, LSD1, LSD1-LIKE 1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1||[http://arabidopsis.org/servlets/TairObject?id=29274&type=locus TAIR]||Am, Au||
+
| AT1G62830||ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATLSD1, ATSWP1, LDL1, LSD1, LSD1-LIKE 1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1||[http://arabidopsis.org/servlets/TairObject?id=29274&type=locus TAIR]||Ambient temperature pathway, Autonomous pathway||
 
|-
 
|-
−
| AT1G65480||FLOWERING LOCUS T, FT||[http://arabidopsis.org/servlets/TairObject?id=30541&type=locus TAIR]||Am, FPI||[http://www.uniprot.org/uniprot/D1MDP3 Grape], [http://www.uniprot.org/uniprot/E5BBS7 Strawberry]
+
| AT1G65480||FLOWERING LOCUS T, FT||[http://arabidopsis.org/servlets/TairObject?id=30541&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator||[http://www.uniprot.org/uniprot/D1MDP3 Grape], [http://www.uniprot.org/uniprot/E5BBS7 Strawberry]
 
|-
 
|-
−
| AT1G68050||"FLAVIN-BINDING, KELCH REPEAT, F BOX 1", ADO3, FKF1||[http://arabidopsis.org/servlets/TairObject?id=137051&type=locus TAIR]||L||
+
| AT1G68050||"FLAVIN-BINDING, KELCH REPEAT, F BOX 1", ADO3, FKF1||[http://arabidopsis.org/servlets/TairObject?id=137051&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT1G68840||ATRAV2, EDF2, ETHYLENE RESPONSE DNA BINDING FACTOR 2, RAP2.8, RAV2, RELATED TO ABI3/VP1 2, RELATED TO AP2 8, TEM2, TEMPRANILLO 2||[http://arabidopsis.org/servlets/TairObject?id=27570&type=locus TAIR]||L||
+
| AT1G68840||ATRAV2, EDF2, ETHYLENE RESPONSE DNA BINDING FACTOR 2, RAP2.8, RAV2, RELATED TO ABI3/VP1 2, RELATED TO AP2 8, TEM2, TEMPRANILLO 2||[http://arabidopsis.org/servlets/TairObject?id=27570&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT1G77080||AGAMOUS-LIKE 27, AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1||[http://arabidopsis.org/servlets/TairObject?id=29106&type=locus TAIR]||Am, FPI, V||
+
| AT1G77080||AGAMOUS-LIKE 27, AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1||[http://arabidopsis.org/servlets/TairObject?id=29106&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway||
 
|-
 
|-
−
| AT1G77300||ASH1 HOMOLOG 2, ASHH2, CAROTENOID CHLOROPLAST REGULATORY1, CCR1, EARLY FLOWERING IN SHORT DAYS, EFS, LAZ2, LAZARUS 2, SDG8, SET DOMAIN GROUP 8||[http://arabidopsis.org/servlets/TairObject?id=136429&type=locus TAIR]||V||
+
| AT1G77300||ASH1 HOMOLOG 2, ASHH2, CAROTENOID CHLOROPLAST REGULATORY1, CCR1, EARLY FLOWERING IN SHORT DAYS, EFS, LAZ2, LAZARUS 2, SDG8, SET DOMAIN GROUP 8||[http://arabidopsis.org/servlets/TairObject?id=136429&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT2G06255||ELF4-L3, ELF4-LIKE 3||[http://arabidopsis.org/servlets/TairObject?id=500231553&type=locus TAIR]||L||
+
| AT2G06255||ELF4-L3, ELF4-LIKE 3||[http://arabidopsis.org/servlets/TairObject?id=500231553&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT2G16780||MSI2, NFC2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2||[http://arabidopsis.org/servlets/TairObject?id=34537&type=locus TAIR]||Au, V||
+
| AT2G16780||MSI2, NFC2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2||[http://arabidopsis.org/servlets/TairObject?id=34537&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
 
|-
 
|-
−
| AT2G17770||ATBZIP27, BASIC REGION/LEUCINE ZIPPER MOTIF 27, BZIP27, FD PARALOG, FDP||[http://arabidopsis.org/servlets/TairObject?id=227228&type=locus TAIR]||Am, MI||
+
| AT2G17770||ATBZIP27, BASIC REGION/LEUCINE ZIPPER MOTIF 27, BZIP27, FD PARALOG, FDP||[http://arabidopsis.org/servlets/TairObject?id=227228&type=locus TAIR]||Ambient temperature pathway, Meristem identity||
 
|-
 
|-
−
| AT2G18790||HY3, OOP1, OUT OF PHASE 1, PHYB, PHYTOCHROME B||[http://arabidopsis.org/servlets/TairObject?id=26548&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/B9U4G3 Grape]
+
| AT2G18790||HY3, OOP1, OUT OF PHASE 1, PHYB, PHYTOCHROME B||[http://arabidopsis.org/servlets/TairObject?id=26548&type=locus TAIR]||Light signaling pathway||[http://www.uniprot.org/uniprot/B9U4G3 Grape]
 
|-
 
|-
−
| AT2G18870||VEL3, VERNALIZATION5/VIN3-LIKE 3, VIL4, VIN3-LIKE 4||[http://arabidopsis.org/servlets/TairObject?id=32249&type=locus TAIR]||Au||
+
| AT2G18870||VEL3, VERNALIZATION5/VIN3-LIKE 3, VIL4, VIN3-LIKE 4||[http://arabidopsis.org/servlets/TairObject?id=32249&type=locus TAIR]||Autonomous pathway||
 
|-
 
|-
−
| AT2G18880||VEL2, VERNALIZATION5/VIN3-LIKE 2, VIL3, VIN3-LIKE 3||[http://arabidopsis.org/servlets/TairObject?id=32230&type=locus TAIR]||Au||
+
| AT2G18880||VEL2, VERNALIZATION5/VIN3-LIKE 2, VIL3, VIN3-LIKE 3||[http://arabidopsis.org/servlets/TairObject?id=32230&type=locus TAIR]||Autonomous pathway||
 
|-
 
|-
−
| AT2G18915||ADAGIO 2, ADO2, LKP2, LOV KELCH PROTEIN 2||[http://arabidopsis.org/servlets/TairObject?id=500231567&type=locus TAIR]||L||
+
| AT2G18915||ADAGIO 2, ADO2, LKP2, LOV KELCH PROTEIN 2||[http://arabidopsis.org/servlets/TairObject?id=500231567&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT2G19520||ACG1, ATMSI4, FVE, MSI4, MULTICOPY SUPPRESSOR OF IRA1 4, NFC04, NFC4||[http://arabidopsis.org/servlets/TairObject?id=33019&type=locus TAIR]||Am, Au||
+
| AT2G19520||ACG1, ATMSI4, FVE, MSI4, MULTICOPY SUPPRESSOR OF IRA1 4, NFC04, NFC4||[http://arabidopsis.org/servlets/TairObject?id=33019&type=locus TAIR]||Ambient temperature pathway, Autonomous pathway||
 
|-
 
|-
−
| AT2G22540||AGAMOUS-LIKE 22, AGL22, SHORT VEGETATIVE PHASE, SVP||[http://arabidopsis.org/servlets/TairObject?id=31694&type=locus TAIR]||Am, V||[http://www.uniprot.org/uniprot/H9CTT8 Grape]
+
| AT2G22540||AGAMOUS-LIKE 22, AGL22, SHORT VEGETATIVE PHASE, SVP||[http://arabidopsis.org/servlets/TairObject?id=31694&type=locus TAIR]||Ambient temperature pathway, Vernalization pathway||[http://www.uniprot.org/uniprot/H9CTT8 Grape]
 
|-
 
|-
−
| AT2G23380||CLF, CURLY LEAF, ICU1, INCURVATA 1, SDG1, SET1, SETDOMAIN 1, SETDOMAIN GROUP 1||[http://arabidopsis.org/servlets/TairObject?id=26534&type=locus TAIR]||Au, V||
+
| AT2G23380||CLF, CURLY LEAF, ICU1, INCURVATA 1, SDG1, SET1, SETDOMAIN 1, SETDOMAIN GROUP 1||[http://arabidopsis.org/servlets/TairObject?id=26534&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
 
|-
 
|-
−
| AT2G25930||EARLY FLOWERING 3, ELF3, PYK20||[http://arabidopsis.org/servlets/TairObject?id=32082&type=locus TAIR]||L||
+
| AT2G25930||EARLY FLOWERING 3, ELF3, PYK20||[http://arabidopsis.org/servlets/TairObject?id=32082&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT2G32950||ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, ATCOP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, COP1, DEETIOLATED MUTANT 340, DET340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1||[http://arabidopsis.org/servlets/TairObject?id=34462&type=locus TAIR]||L||
+
| AT2G32950||ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, ATCOP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, COP1, DEETIOLATED MUTANT 340, DET340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1||[http://arabidopsis.org/servlets/TairObject?id=34462&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT2G33835||FES1, FRIGIDA-ESSENTIAL 1||[http://arabidopsis.org/servlets/TairObject?id=500230872&type=locus TAIR]||V||
+
| AT2G33835||FES1, FRIGIDA-ESSENTIAL 1||[http://arabidopsis.org/servlets/TairObject?id=500230872&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT2G34140||||[http://arabidopsis.org/servlets/TairObject?id=33865&type=locus TAIR]||L||
+
| AT2G34140||||[http://arabidopsis.org/servlets/TairObject?id=33865&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT2G40080||EARLY FLOWERING 4, ELF4||[http://arabidopsis.org/servlets/TairObject?id=34766&type=locus TAIR]||L||
+
| AT2G40080||EARLY FLOWERING 4, ELF4||[http://arabidopsis.org/servlets/TairObject?id=34766&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT2G43410||FPA||[http://arabidopsis.org/servlets/TairObject?id=34279&type=locus TAIR]||Au||
+
| AT2G43410||FPA||[http://arabidopsis.org/servlets/TairObject?id=34279&type=locus TAIR]||Autonomous pathway||
 
|-
 
|-
−
| AT2G46340||SPA1, SUPPRESSOR OF PHYA-105 1||[http://arabidopsis.org/servlets/TairObject?id=31336&type=locus TAIR]||L||
+
| AT2G46340||SPA1, SUPPRESSOR OF PHYA-105 1||[http://arabidopsis.org/servlets/TairObject?id=31336&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT2G46670||||[http://arabidopsis.org/servlets/TairObject?id=35019&type=locus TAIR]||L||
+
| AT2G46670||||[http://arabidopsis.org/servlets/TairObject?id=35019&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT2G46790||APRR9, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9, PRR9, PSEUDO-RESPONSE REGULATOR 9, TL1, TOC1-LIKE PROTEIN 1||[http://arabidopsis.org/servlets/TairObject?id=32227&type=locus TAIR]||L||
+
| AT2G46790||APRR9, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9, PRR9, PSEUDO-RESPONSE REGULATOR 9, TL1, TOC1-LIKE PROTEIN 1||[http://arabidopsis.org/servlets/TairObject?id=32227&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT2G46830||ATCCA1, CCA1, CIRCADIAN CLOCK ASSOCIATED 1||[http://arabidopsis.org/servlets/TairObject?id=32221&type=locus TAIR]||L||
+
| AT2G46830||ATCCA1, CCA1, CIRCADIAN CLOCK ASSOCIATED 1||[http://arabidopsis.org/servlets/TairObject?id=32221&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT2G47700||RED AND FAR-RED INSENSITIVE 2, RFI2||[http://arabidopsis.org/servlets/TairObject?id=32070&type=locus TAIR]||L||
+
| AT2G47700||RED AND FAR-RED INSENSITIVE 2, RFI2||[http://arabidopsis.org/servlets/TairObject?id=32070&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT3G02380||ATCOL2, B-BOX DOMAIN PROTEIN 3, BBX3, COL2, CONSTANS-LIKE 2||[http://arabidopsis.org/servlets/TairObject?id=35635&type=locus TAIR]||FPI, L||
+
| AT3G02380||ATCOL2, B-BOX DOMAIN PROTEIN 3, BBX3, COL2, CONSTANS-LIKE 2||[http://arabidopsis.org/servlets/TairObject?id=35635&type=locus TAIR]||Flowering pathway integrator, Light signaling pathway||
 
|-
 
|-
−
| AT3G04610||FLK, FLOWERING LOCUS KH DOMAIN||[http://arabidopsis.org/servlets/TairObject?id=37455&type=locus TAIR]||Au||
+
| AT3G04610||FLK, FLOWERING LOCUS KH DOMAIN||[http://arabidopsis.org/servlets/TairObject?id=37455&type=locus TAIR]||Autonomous pathway||
 
|-
 
|-
−
| AT3G07650||B-BOX DOMAIN PROTEIN 7, BBX7, COL9, CONSTANS-LIKE 9||[http://arabidopsis.org/servlets/TairObject?id=38550&type=locus TAIR]||L||
+
| AT3G07650||B-BOX DOMAIN PROTEIN 7, BBX7, COL9, CONSTANS-LIKE 9||[http://arabidopsis.org/servlets/TairObject?id=38550&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT3G10390||FLD, FLOWERING LOCUS D||[http://arabidopsis.org/servlets/TairObject?id=35869&type=locus TAIR]||Am, Au||
+
| AT3G10390||FLD, FLOWERING LOCUS D||[http://arabidopsis.org/servlets/TairObject?id=35869&type=locus TAIR]||Ambient temperature pathway, Autonomous pathway||
 
|-
 
|-
−
| AT3G12810||CHR13, PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, PIE1, SRCAP||[http://arabidopsis.org/servlets/TairObject?id=37964&type=locus TAIR]||V||
+
| AT3G12810||CHR13, PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, PIE1, SRCAP||[http://arabidopsis.org/servlets/TairObject?id=37964&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT3G13682||LDL2, LSD1-LIKE2||[http://arabidopsis.org/servlets/TairObject?id=38624&type=locus TAIR]||Am, Au||
+
| AT3G13682||LDL2, LSD1-LIKE2||[http://arabidopsis.org/servlets/TairObject?id=38624&type=locus TAIR]||Ambient temperature pathway, Autonomous pathway||
 
|-
 
|-
−
| AT3G15354||SPA1-RELATED 3, SPA3||[http://arabidopsis.org/servlets/TairObject?id=500230681&type=locus TAIR]||L||
+
| AT3G15354||SPA1-RELATED 3, SPA3||[http://arabidopsis.org/servlets/TairObject?id=500230681&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT3G15620||UV REPAIR DEFECTIVE 3, UVR3||[http://arabidopsis.org/servlets/TairObject?id=38932&type=locus TAIR]||L||
+
| AT3G15620||UV REPAIR DEFECTIVE 3, UVR3||[http://arabidopsis.org/servlets/TairObject?id=38932&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT3G18990||REDUCED VERNALIZATION RESPONSE 1, REM39, REPRODUCTIVE MERISTEM 39, VRN1||[http://arabidopsis.org/servlets/TairObject?id=37620&type=locus TAIR]||V||
+
| AT3G18990||REDUCED VERNALIZATION RESPONSE 1, REM39, REPRODUCTIVE MERISTEM 39, VRN1||[http://arabidopsis.org/servlets/TairObject?id=37620&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT3G20740||FERTILIZATION-INDEPENDENT ENDOSPERM, FERTILIZATION-INDEPENDENT ENDOSPERM 1, FIE, FIE1, FIS3||[http://arabidopsis.org/servlets/TairObject?id=38691&type=locus TAIR]||Au, V||
+
| AT3G20740||FERTILIZATION-INDEPENDENT ENDOSPERM, FERTILIZATION-INDEPENDENT ENDOSPERM 1, FIE, FIE1, FIS3||[http://arabidopsis.org/servlets/TairObject?id=38691&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
 
|-
 
|-
−
| AT3G21320||||[http://arabidopsis.org/servlets/TairObject?id=39170&type=locus TAIR]||L||
+
| AT3G21320||||[http://arabidopsis.org/servlets/TairObject?id=39170&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT3G24440||VERNALIZATION 5, VIL1, VIN3-LIKE 1, VRN5||[http://arabidopsis.org/servlets/TairObject?id=39196&type=locus TAIR]||Au, V||
+
| AT3G24440||VERNALIZATION 5, VIL1, VIN3-LIKE 1, VRN5||[http://arabidopsis.org/servlets/TairObject?id=39196&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
 
|-
 
|-
−
| AT3G25730||EDF3, ETHYLENE RESPONSE DNA BINDING FACTOR 3||[http://arabidopsis.org/servlets/TairObject?id=37641&type=locus TAIR]||L||
+
| AT3G25730||EDF3, ETHYLENE RESPONSE DNA BINDING FACTOR 3||[http://arabidopsis.org/servlets/TairObject?id=37641&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT3G33520||ACTIN-RELATED PROTEIN 6, ARP6, ATARP6, EARLY IN SHORT DAYS 1, ESD1, SUF3, SUPPRESSOR OF FRI 3||[http://arabidopsis.org/servlets/TairObject?id=40458&type=locus TAIR]||Am, V||
+
| AT3G33520||ACTIN-RELATED PROTEIN 6, ARP6, ATARP6, EARLY IN SHORT DAYS 1, ESD1, SUF3, SUPPRESSOR OF FRI 3||[http://arabidopsis.org/servlets/TairObject?id=40458&type=locus TAIR]||Ambient temperature pathway, Vernalization pathway||
 
|-
 
|-
−
| AT3G46640||LUX, LUX ARRHYTHMO, PCL1, PHYTOCLOCK 1||[http://arabidopsis.org/servlets/TairObject?id=35747&type=locus TAIR]||L||
+
| AT3G46640||LUX, LUX ARRHYTHMO, PCL1, PHYTOCLOCK 1||[http://arabidopsis.org/servlets/TairObject?id=35747&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT3G47500||CDF3, CYCLING DOF FACTOR 3||[http://arabidopsis.org/servlets/TairObject?id=36439&type=locus TAIR]||L||
+
| AT3G47500||CDF3, CYCLING DOF FACTOR 3||[http://arabidopsis.org/servlets/TairObject?id=36439&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT4G00650||FLA, FLOWERING LOCUS A, FRI, FRIGIDA||[http://arabidopsis.org/servlets/TairObject?id=128299&type=locus TAIR]||V||
+
| AT4G00650||FLA, FLOWERING LOCUS A, FRI, FRIGIDA||[http://arabidopsis.org/servlets/TairObject?id=128299&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT4G02020||EZA1, SDG10, SET DOMAIN-CONTAINING PROTEIN 10, SWINGER, SWN||[http://arabidopsis.org/servlets/TairObject?id=129104&type=locus TAIR]||Au, V||
+
| AT4G02020||EZA1, SDG10, SET DOMAIN-CONTAINING PROTEIN 10, SWINGER, SWN||[http://arabidopsis.org/servlets/TairObject?id=129104&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
 
|-
 
|-
−
| AT4G02560||LD, LUMINIDEPENDENS||[http://arabidopsis.org/servlets/TairObject?id=26564&type=locus TAIR]||Au||
+
| AT4G02560||LD, LUMINIDEPENDENS||[http://arabidopsis.org/servlets/TairObject?id=26564&type=locus TAIR]||Autonomous pathway||
 
|-
 
|-
−
| AT4G08920||ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, CRYPTOCHROME 1, ELONGATED HYPOCOTYL 4, HY4, OOP2, OUT OF PHASE 2||[http://arabidopsis.org/servlets/TairObject?id=129943&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/B6REW9 Grape]
+
| AT4G08920||ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, CRYPTOCHROME 1, ELONGATED HYPOCOTYL 4, HY4, OOP2, OUT OF PHASE 2||[http://arabidopsis.org/servlets/TairObject?id=129943&type=locus TAIR]||Light signaling pathway||[http://www.uniprot.org/uniprot/B6REW9 Grape]
 
|-
 
|-
−
| AT4G11110||SPA1-RELATED 2, SPA2||[http://arabidopsis.org/servlets/TairObject?id=129633&type=locus TAIR]||L||
+
| AT4G11110||SPA1-RELATED 2, SPA2||[http://arabidopsis.org/servlets/TairObject?id=129633&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT4G11880||AGAMOUS-LIKE 14, AGL14||[http://arabidopsis.org/servlets/TairObject?id=129748&type=locus TAIR]||V||
+
| AT4G11880||AGAMOUS-LIKE 14, AGL14||[http://arabidopsis.org/servlets/TairObject?id=129748&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT4G16250||PHYD, PHYTOCHROME D||[http://arabidopsis.org/servlets/TairObject?id=26567&type=locus TAIR]||L||
+
| AT4G16250||PHYD, PHYTOCHROME D||[http://arabidopsis.org/servlets/TairObject?id=26567&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT4G16280||FCA||[http://arabidopsis.org/servlets/TairObject?id=128853&type=locus TAIR]||Am, Au||[http://www.uniprot.org/uniprot/D2Y3W8 Grape]
+
| AT4G16280||FCA||[http://arabidopsis.org/servlets/TairObject?id=128853&type=locus TAIR]||Ambient temperature pathway, Autonomous pathway||[http://www.uniprot.org/uniprot/D2Y3W8 Grape]
 
|-
 
|-
−
| AT4G16845||REDUCED VERNALIZATION RESPONSE 2, VRN2||[http://arabidopsis.org/servlets/TairObject?id=228106&type=locus TAIR]||Au, V||
+
| AT4G16845||REDUCED VERNALIZATION RESPONSE 2, VRN2||[http://arabidopsis.org/servlets/TairObject?id=228106&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
 
|-
 
|-
−
| AT4G18130||PHYE, PHYTOCHROME E||[http://arabidopsis.org/servlets/TairObject?id=26568&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/B9U4G5 Grape]
+
| AT4G18130||PHYE, PHYTOCHROME E||[http://arabidopsis.org/servlets/TairObject?id=26568&type=locus TAIR]||Light signaling pathway||[http://www.uniprot.org/uniprot/B9U4G5 Grape]
 
|-
 
|-
−
| AT4G20370||TSF, TWIN SISTER OF FT||[http://arabidopsis.org/servlets/TairObject?id=26553&type=locus TAIR]||Am, FPI||
+
| AT4G20370||TSF, TWIN SISTER OF FT||[http://arabidopsis.org/servlets/TairObject?id=26553&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator||
 
|-
 
|-
−
| AT4G22950||AGAMOUS-LIKE 19, AGL19, GL19||[http://arabidopsis.org/servlets/TairObject?id=128336&type=locus TAIR]||V||
+
| AT4G22950||AGAMOUS-LIKE 19, AGL19, GL19||[http://arabidopsis.org/servlets/TairObject?id=128336&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT4G24540||AGAMOUS-LIKE 24, AGL24||[http://arabidopsis.org/servlets/TairObject?id=127586&type=locus TAIR]||V||
+
| AT4G24540||AGAMOUS-LIKE 24, AGL24||[http://arabidopsis.org/servlets/TairObject?id=127586&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT4G26000||PEP, PEPPER||[http://arabidopsis.org/servlets/TairObject?id=127403&type=locus TAIR]||V||
+
| AT4G26000||PEP, PEPPER||[http://arabidopsis.org/servlets/TairObject?id=127403&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT4G29730||MSI5, NFC5, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C5||[http://arabidopsis.org/servlets/TairObject?id=129407&type=locus TAIR]||Am, Au||
+
| AT4G29730||MSI5, NFC5, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C5||[http://arabidopsis.org/servlets/TairObject?id=129407&type=locus TAIR]||Ambient temperature pathway, Autonomous pathway||
 
|-
 
|-
−
| AT4G30200||VEL1, VERNALIZATION5/VIN3-LIKE 1, VIL2, VIN3-LIKE 2||[http://arabidopsis.org/servlets/TairObject?id=128580&type=locus TAIR]||Au, V||
+
| AT4G30200||VEL1, VERNALIZATION5/VIN3-LIKE 1, VIL2, VIN3-LIKE 2||[http://arabidopsis.org/servlets/TairObject?id=128580&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
 
|-
 
|-
−
| AT4G34530||CIB1, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1||[http://arabidopsis.org/servlets/TairObject?id=130033&type=locus TAIR]||L||
+
| AT4G34530||CIB1, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1||[http://arabidopsis.org/servlets/TairObject?id=130033&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT4G35050||MSI3, NFC3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3||[http://arabidopsis.org/servlets/TairObject?id=129003&type=locus TAIR]||Au, V||
+
| AT4G35050||MSI3, NFC3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3||[http://arabidopsis.org/servlets/TairObject?id=129003&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
 
|-
 
|-
−
| AT4G35900||ATBZIP14, FD, FD-1||[http://arabidopsis.org/servlets/TairObject?id=128068&type=locus TAIR]||Am, MI||
+
| AT4G35900||ATBZIP14, FD, FD-1||[http://arabidopsis.org/servlets/TairObject?id=128068&type=locus TAIR]||Ambient temperature pathway, Meristem identity||
 
|-
 
|-
−
| AT5G02810||APRR7, PRR7, PSEUDO-RESPONSE REGULATOR 7||[http://arabidopsis.org/servlets/TairObject?id=131538&type=locus TAIR]||L||
+
| AT5G02810||APRR7, PRR7, PSEUDO-RESPONSE REGULATOR 7||[http://arabidopsis.org/servlets/TairObject?id=131538&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT5G03840||TERMINAL FLOWER 1, TFL1||[http://arabidopsis.org/servlets/TairObject?id=131459&type=locus TAIR]||Am, FPI||[http://www.uniprot.org/uniprot/Q84MI7 Grape], [http://www.uniprot.org/uniprot/G5CJU3 Strawberry]
+
| AT5G03840||TERMINAL FLOWER 1, TFL1||[http://arabidopsis.org/servlets/TairObject?id=131459&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator||[http://www.uniprot.org/uniprot/Q84MI7 Grape], [http://www.uniprot.org/uniprot/G5CJU3 Strawberry]
 
|-
 
|-
−
| AT5G08230||||[http://arabidopsis.org/servlets/TairObject?id=135669&type=locus TAIR]||V||
+
| AT5G08230||||[http://arabidopsis.org/servlets/TairObject?id=135669&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT5G08330||CCA1 HIKING EXPEDITION, CHE, TRANSCRIPTION FACTOR TCP21, TCP21||[http://www.uniprot.org/uniprot/Q9FTA2 UniProtKB]||L||
+
| AT5G08330||CCA1 HIKING EXPEDITION, CHE, TRANSCRIPTION FACTOR TCP21, TCP21||[http://www.uniprot.org/uniprot/Q9FTA2 UniProtKB]||Light signaling pathway||
 
|-
 
|-
−
| AT5G10140||AGAMOUS-LIKE 25, AGL25, FLC, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F||[http://arabidopsis.org/servlets/TairObject?id=136002&type=locus TAIR]||Am, FPI, V||[http://www.uniprot.org/uniprot/D1MDP4 Grape]
+
| AT5G10140||AGAMOUS-LIKE 25, AGL25, FLC, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F||[http://arabidopsis.org/servlets/TairObject?id=136002&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway||[http://www.uniprot.org/uniprot/D1MDP4 Grape]
 
|-
 
|-
−
| AT5G13480||FY||[http://arabidopsis.org/servlets/TairObject?id=136108&type=locus TAIR]||Au||
+
| AT5G13480||FY||[http://arabidopsis.org/servlets/TairObject?id=136108&type=locus TAIR]||Autonomous pathway||
 
|-
 
|-
−
| AT5G15840||B-BOX DOMAIN PROTEIN 1, BBX1, CO, CONSTANS, FG||[http://arabidopsis.org/servlets/TairObject?id=130492&type=locus TAIR]||FPI, L||
+
| AT5G15840||B-BOX DOMAIN PROTEIN 1, BBX1, CO, CONSTANS, FG||[http://arabidopsis.org/servlets/TairObject?id=130492&type=locus TAIR]||Flowering pathway integrator, Light signaling pathway||
 
|-
 
|-
−
| AT5G15850||ATCOL1, B-BOX DOMAIN PROTEIN 2, BBX2, COL1, CONSTANS-LIKE 1||[http://arabidopsis.org/servlets/TairObject?id=130495&type=locus TAIR]||FPI, L||
+
| AT5G15850||ATCOL1, B-BOX DOMAIN PROTEIN 2, BBX2, COL1, CONSTANS-LIKE 1||[http://arabidopsis.org/servlets/TairObject?id=130495&type=locus TAIR]||Flowering pathway integrator, Light signaling pathway||
 
|-
 
|-
−
| AT5G23150||ENHANCER OF AG-4 2, HUA2||[http://arabidopsis.org/servlets/TairObject?id=135220&type=locus TAIR]||V||
+
| AT5G23150||ENHANCER OF AG-4 2, HUA2||[http://arabidopsis.org/servlets/TairObject?id=135220&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT5G23280||||[http://arabidopsis.org/servlets/TairObject?id=133661&type=locus TAIR]||L||
+
| AT5G23280||||[http://arabidopsis.org/servlets/TairObject?id=133661&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT5G24470||APRR5, PRR5, PSEUDO-RESPONSE REGULATOR 5||[http://arabidopsis.org/servlets/TairObject?id=135985&type=locus TAIR]||L||
+
| AT5G24470||APRR5, PRR5, PSEUDO-RESPONSE REGULATOR 5||[http://arabidopsis.org/servlets/TairObject?id=135985&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT5G24930||ATCOL4, B-BOX DOMAIN PROTEIN 5, BBX5, COL4, CONSTANS-LIKE 4||[http://arabidopsis.org/servlets/TairObject?id=131285&type=locus TAIR]||L||
+
| AT5G24930||ATCOL4, B-BOX DOMAIN PROTEIN 5, BBX5, COL4, CONSTANS-LIKE 4||[http://arabidopsis.org/servlets/TairObject?id=131285&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT5G35840||PHYC, PHYTOCHROME C||[http://arabidopsis.org/servlets/TairObject?id=133466&type=locus TAIR]||L||[http://www.uniprot.org/uniprot/B9U4G4 Grape]
+
| AT5G35840||PHYC, PHYTOCHROME C||[http://arabidopsis.org/servlets/TairObject?id=133466&type=locus TAIR]||Light signaling pathway||[http://www.uniprot.org/uniprot/B9U4G4 Grape]
 
|-
 
|-
−
| AT5G37055||ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING||[http://arabidopsis.org/servlets/TairObject?id=500231974&type=locus TAIR]||V||
+
| AT5G37055||ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING||[http://arabidopsis.org/servlets/TairObject?id=500231974&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT5G39660||CDF2, CYCLING DOF FACTOR 2||[http://arabidopsis.org/servlets/TairObject?id=133414&type=locus TAIR]||L||
+
| AT5G39660||CDF2, CYCLING DOF FACTOR 2||[http://arabidopsis.org/servlets/TairObject?id=133414&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT5G42790||ARS5, ARSENIC TOLERANCE 5, ATPSM30, PAF1, PROTEASOME ALPHA SUBUNIT F1||[http://arabidopsis.org/servlets/TairObject?id=133505&type=locus TAIR]||V||
+
| AT5G42790||ARS5, ARSENIC TOLERANCE 5, ATPSM30, PAF1, PROTEASOME ALPHA SUBUNIT F1||[http://arabidopsis.org/servlets/TairObject?id=133505&type=locus TAIR]||Vernalization pathway||
 
|-
 
|-
−
| AT5G48250||B-BOX DOMAIN PROTEIN 8, BBX8||[http://arabidopsis.org/servlets/TairObject?id=133393&type=locus TAIR]||L||
+
| AT5G48250||B-BOX DOMAIN PROTEIN 8, BBX8||[http://arabidopsis.org/servlets/TairObject?id=133393&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT5G57360||ADAGIO 1, ADO1, FKF1-LIKE PROTEIN 2, FKL2, LKP1, LOV KELCH PROTEIN 1, ZEITLUPE, ZTL||[http://arabidopsis.org/servlets/TairObject?id=134481&type=locus TAIR]||L||
+
| AT5G57360||ADAGIO 1, ADO1, FKF1-LIKE PROTEIN 2, FKL2, LKP1, LOV KELCH PROTEIN 1, ZEITLUPE, ZTL||[http://arabidopsis.org/servlets/TairObject?id=134481&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT5G57380||VERNALIZATION INSENSITIVE 3, VIN3||[http://arabidopsis.org/servlets/TairObject?id=134483&type=locus TAIR]||Au, V||
+
| AT5G57380||VERNALIZATION INSENSITIVE 3, VIN3||[http://arabidopsis.org/servlets/TairObject?id=134483&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
 
|-
 
|-
−
| AT5G57660||ATCOL5, B-BOX DOMAIN PROTEIN 6, BBX6, COL5, CONSTANS-LIKE 5||[http://arabidopsis.org/servlets/TairObject?id=134422&type=locus TAIR]||L||
+
| AT5G57660||ATCOL5, B-BOX DOMAIN PROTEIN 6, BBX6, COL5, CONSTANS-LIKE 5||[http://arabidopsis.org/servlets/TairObject?id=134422&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT5G58230||ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, ATMSI1, MATERNAL EFFECT EMBRYO ARREST 70, MEE70, MSI1, MULTICOPY SUPRESSOR OF IRA1||[http://arabidopsis.org/servlets/TairObject?id=132921&type=locus TAIR]||Au, V||
+
| AT5G58230||ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, ATMSI1, MATERNAL EFFECT EMBRYO ARREST 70, MEE70, MSI1, MULTICOPY SUPRESSOR OF IRA1||[http://arabidopsis.org/servlets/TairObject?id=132921&type=locus TAIR]||Autonomous pathway, Vernalization pathway||
 
|-
 
|-
−
| AT5G59570||BOA, BROTHER OF LUX ARRHYTHMO||[http://arabidopsis.org/servlets/TairObject?id=131156&type=locus TAIR]||L||
+
| AT5G59570||BOA, BROTHER OF LUX ARRHYTHMO||[http://arabidopsis.org/servlets/TairObject?id=131156&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT5G60100||APRR3, PRR3, PSEUDO-RESPONSE REGULATOR 3||[http://arabidopsis.org/servlets/TairObject?id=133317&type=locus TAIR]||L||
+
| AT5G60100||APRR3, PRR3, PSEUDO-RESPONSE REGULATOR 3||[http://arabidopsis.org/servlets/TairObject?id=133317&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT5G61380||APRR1, ATTOC1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, TOC1||[http://arabidopsis.org/servlets/TairObject?id=133196&type=locus TAIR]||L||
+
| AT5G61380||APRR1, ATTOC1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, TOC1||[http://arabidopsis.org/servlets/TairObject?id=133196&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT5G62430||CDF1, CYCLING DOF FACTOR 1||[http://arabidopsis.org/servlets/TairObject?id=131911&type=locus TAIR]||L||
+
| AT5G62430||CDF1, CYCLING DOF FACTOR 1||[http://arabidopsis.org/servlets/TairObject?id=131911&type=locus TAIR]||Light signaling pathway||
 
|-
 
|-
−
| AT5G65050||AGAMOUS-LIKE 31, AGL31, MADS AFFECTING FLOWERING 2, MAF2||[http://arabidopsis.org/servlets/TairObject?id=135154&type=locus TAIR]||Am, FPI, V||
+
| AT5G65050||AGAMOUS-LIKE 31, AGL31, MADS AFFECTING FLOWERING 2, MAF2||[http://arabidopsis.org/servlets/TairObject?id=135154&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway||
 
|-
 
|-
−
| AT5G65060||AGAMOUS-LIKE 70, AGL70, FCL3, MADS AFFECTING FLOWERING 3, MAF3||[http://arabidopsis.org/servlets/TairObject?id=130633&type=locus TAIR]||Am, FPI, V||
+
| AT5G65060||AGAMOUS-LIKE 70, AGL70, FCL3, MADS AFFECTING FLOWERING 3, MAF3||[http://arabidopsis.org/servlets/TairObject?id=130633&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway||
 
|-
 
|-
−
| AT5G65070||AGAMOUS-LIKE 69, AGL69, FCL4, MADS AFFECTING FLOWERING 4, MAF4||[http://arabidopsis.org/servlets/TairObject?id=130634&type=locus TAIR]||Am, FPI, V||
+
| AT5G65070||AGAMOUS-LIKE 69, AGL69, FCL4, MADS AFFECTING FLOWERING 4, MAF4||[http://arabidopsis.org/servlets/TairObject?id=130634&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway||
 
|-
 
|-
−
| AT5G65080||AGAMOUS-LIKE 68, AGL68, MADS AFFECTING FLOWERING 5, MAF5||[http://arabidopsis.org/servlets/TairObject?id=130635&type=locus TAIR]||Am, FPI, V||
+
| AT5G65080||AGAMOUS-LIKE 68, AGL68, MADS AFFECTING FLOWERING 5, MAF5||[http://arabidopsis.org/servlets/TairObject?id=130635&type=locus TAIR]||Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway||
 
|}
 
|}

Revision as of 22:54, 5 March 2013

By Austin Mudd - Spring 2013


To Do

  • Write introduction and procedure sections
  • Aggregate all sequences into a single document in proper FASTA format


Introduction

The factors affecting time of flowering from the Max Planck Institute for Plant Breeding Research


Procedure

  • Overall procedure for finding the genes, running with GenSAS, determining SSRs, etc


Gallery of Arabidopsis Flowering Pathways


105 Flowering Genes

The below table lists all of the genes involved in the ambient temperature, autonomous, light signaling, and vernalization pathways.

Note: All Arabidopsis genes are compiled from Jung et al., 2012. All potential orthologs are found via UniProt Grape or UniProt Strawberry nomenclature search. Formatting is the same as Jung et al., 2012 where a * indicates 1 of "24 Arabidopsis genes, which had not been previously investigated for their roles in flowering, [that] belong to [paralog groups] with known Arabidopsis flowering genes." Moreover, for pathways, "Am: Ambient temperature pathway, Au: Autonomous pathway, FPI: Flowering Pathway [Integrators], L: Light signaling pathway, MI: Meristem Identity, V: Vernalization pathway."

Arabidopsis Locus Other Names AA Sequence Pathway Potential Ortholog
AT1G01060 LATE ELONGATED HYPOCOTYL, LATE ELONGATED HYPOCOTYL 1, LHY, LHY1 TAIR Light signaling pathway
AT1G02580 EMB173, EMBRYO DEFECTIVE 173, FERTILIZATION INDEPENDENT SEED 1, FIS1, MEA, MEDEA, SDG5, SET DOMAIN-CONTAINING PROTEIN 5 TAIR Autonomous pathway, Vernalization pathway
AT1G04400 AT-PHH1, ATCRY2, CRY2, CRYPTOCHROME 2, FHA, PHH1 TAIR Light signaling pathway
AT1G09570 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, FHY2, FRE1, HY8, PHYA, PHYTOCHROME A TAIR Light signaling pathway Grape
AT1G13260 EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, RELATED TO ABI3/VP1 1 TAIR Light signaling pathway
AT1G20330 COTYLEDON VASCULAR PATTERN 1, CVP1, FRILL1, FRL1, SMT2, STEROL METHYLTRANSFERASE 2 TAIR Vernalization pathway
AT1G22770 FB, GI, GIGANTEA TAIR Light signaling pathway
AT1G25560 EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 TAIR Light signaling pathway
AT1G26790 TAIR Light signaling pathway
AT1G29160 TAIR Light signaling pathway
AT1G30970 SUF4, SUPPRESSOR OF FRIGIDA4 TAIR Vernalization pathway
AT1G31814 FRIGIDA LIKE 2, FRL2 TAIR Vernalization pathway
AT1G47250 20S PROTEASOME ALPHA SUBUNIT F2, PAF2 TAIR Vernalization pathway
AT1G53090 SPA1-RELATED 4, SPA4 TAIR Light signaling pathway
AT1G62830 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATLSD1, ATSWP1, LDL1, LSD1, LSD1-LIKE 1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1 TAIR Ambient temperature pathway, Autonomous pathway
AT1G65480 FLOWERING LOCUS T, FT TAIR Ambient temperature pathway, Flowering pathway integrator Grape, Strawberry
AT1G68050 "FLAVIN-BINDING, KELCH REPEAT, F BOX 1", ADO3, FKF1 TAIR Light signaling pathway
AT1G68840 ATRAV2, EDF2, ETHYLENE RESPONSE DNA BINDING FACTOR 2, RAP2.8, RAV2, RELATED TO ABI3/VP1 2, RELATED TO AP2 8, TEM2, TEMPRANILLO 2 TAIR Light signaling pathway
AT1G77080 AGAMOUS-LIKE 27, AGL27, FLM, FLOWERING LOCUS M, MADS AFFECTING FLOWERING 1, MAF1 TAIR Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway
AT1G77300 ASH1 HOMOLOG 2, ASHH2, CAROTENOID CHLOROPLAST REGULATORY1, CCR1, EARLY FLOWERING IN SHORT DAYS, EFS, LAZ2, LAZARUS 2, SDG8, SET DOMAIN GROUP 8 TAIR Vernalization pathway
AT2G06255 ELF4-L3, ELF4-LIKE 3 TAIR Light signaling pathway
AT2G16780 MSI2, NFC2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2 TAIR Autonomous pathway, Vernalization pathway
AT2G17770 ATBZIP27, BASIC REGION/LEUCINE ZIPPER MOTIF 27, BZIP27, FD PARALOG, FDP TAIR Ambient temperature pathway, Meristem identity
AT2G18790 HY3, OOP1, OUT OF PHASE 1, PHYB, PHYTOCHROME B TAIR Light signaling pathway Grape
AT2G18870 VEL3, VERNALIZATION5/VIN3-LIKE 3, VIL4, VIN3-LIKE 4 TAIR Autonomous pathway
AT2G18880 VEL2, VERNALIZATION5/VIN3-LIKE 2, VIL3, VIN3-LIKE 3 TAIR Autonomous pathway
AT2G18915 ADAGIO 2, ADO2, LKP2, LOV KELCH PROTEIN 2 TAIR Light signaling pathway
AT2G19520 ACG1, ATMSI4, FVE, MSI4, MULTICOPY SUPPRESSOR OF IRA1 4, NFC04, NFC4 TAIR Ambient temperature pathway, Autonomous pathway
AT2G22540 AGAMOUS-LIKE 22, AGL22, SHORT VEGETATIVE PHASE, SVP TAIR Ambient temperature pathway, Vernalization pathway Grape
AT2G23380 CLF, CURLY LEAF, ICU1, INCURVATA 1, SDG1, SET1, SETDOMAIN 1, SETDOMAIN GROUP 1 TAIR Autonomous pathway, Vernalization pathway
AT2G25930 EARLY FLOWERING 3, ELF3, PYK20 TAIR Light signaling pathway
AT2G32950 ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, ATCOP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, COP1, DEETIOLATED MUTANT 340, DET340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1 TAIR Light signaling pathway
AT2G33835 FES1, FRIGIDA-ESSENTIAL 1 TAIR Vernalization pathway
AT2G34140 TAIR Light signaling pathway
AT2G40080 EARLY FLOWERING 4, ELF4 TAIR Light signaling pathway
AT2G43410 FPA TAIR Autonomous pathway
AT2G46340 SPA1, SUPPRESSOR OF PHYA-105 1 TAIR Light signaling pathway
AT2G46670 TAIR Light signaling pathway
AT2G46790 APRR9, ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9, PRR9, PSEUDO-RESPONSE REGULATOR 9, TL1, TOC1-LIKE PROTEIN 1 TAIR Light signaling pathway
AT2G46830 ATCCA1, CCA1, CIRCADIAN CLOCK ASSOCIATED 1 TAIR Light signaling pathway
AT2G47700 RED AND FAR-RED INSENSITIVE 2, RFI2 TAIR Light signaling pathway
AT3G02380 ATCOL2, B-BOX DOMAIN PROTEIN 3, BBX3, COL2, CONSTANS-LIKE 2 TAIR Flowering pathway integrator, Light signaling pathway
AT3G04610 FLK, FLOWERING LOCUS KH DOMAIN TAIR Autonomous pathway
AT3G07650 B-BOX DOMAIN PROTEIN 7, BBX7, COL9, CONSTANS-LIKE 9 TAIR Light signaling pathway
AT3G10390 FLD, FLOWERING LOCUS D TAIR Ambient temperature pathway, Autonomous pathway
AT3G12810 CHR13, PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, PIE1, SRCAP TAIR Vernalization pathway
AT3G13682 LDL2, LSD1-LIKE2 TAIR Ambient temperature pathway, Autonomous pathway
AT3G15354 SPA1-RELATED 3, SPA3 TAIR Light signaling pathway
AT3G15620 UV REPAIR DEFECTIVE 3, UVR3 TAIR Light signaling pathway
AT3G18990 REDUCED VERNALIZATION RESPONSE 1, REM39, REPRODUCTIVE MERISTEM 39, VRN1 TAIR Vernalization pathway
AT3G20740 FERTILIZATION-INDEPENDENT ENDOSPERM, FERTILIZATION-INDEPENDENT ENDOSPERM 1, FIE, FIE1, FIS3 TAIR Autonomous pathway, Vernalization pathway
AT3G21320 TAIR Light signaling pathway
AT3G24440 VERNALIZATION 5, VIL1, VIN3-LIKE 1, VRN5 TAIR Autonomous pathway, Vernalization pathway
AT3G25730 EDF3, ETHYLENE RESPONSE DNA BINDING FACTOR 3 TAIR Light signaling pathway
AT3G33520 ACTIN-RELATED PROTEIN 6, ARP6, ATARP6, EARLY IN SHORT DAYS 1, ESD1, SUF3, SUPPRESSOR OF FRI 3 TAIR Ambient temperature pathway, Vernalization pathway
AT3G46640 LUX, LUX ARRHYTHMO, PCL1, PHYTOCLOCK 1 TAIR Light signaling pathway
AT3G47500 CDF3, CYCLING DOF FACTOR 3 TAIR Light signaling pathway
AT4G00650 FLA, FLOWERING LOCUS A, FRI, FRIGIDA TAIR Vernalization pathway
AT4G02020 EZA1, SDG10, SET DOMAIN-CONTAINING PROTEIN 10, SWINGER, SWN TAIR Autonomous pathway, Vernalization pathway
AT4G02560 LD, LUMINIDEPENDENS TAIR Autonomous pathway
AT4G08920 ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, CRYPTOCHROME 1, ELONGATED HYPOCOTYL 4, HY4, OOP2, OUT OF PHASE 2 TAIR Light signaling pathway Grape
AT4G11110 SPA1-RELATED 2, SPA2 TAIR Light signaling pathway
AT4G11880 AGAMOUS-LIKE 14, AGL14 TAIR Vernalization pathway
AT4G16250 PHYD, PHYTOCHROME D TAIR Light signaling pathway
AT4G16280 FCA TAIR Ambient temperature pathway, Autonomous pathway Grape
AT4G16845 REDUCED VERNALIZATION RESPONSE 2, VRN2 TAIR Autonomous pathway, Vernalization pathway
AT4G18130 PHYE, PHYTOCHROME E TAIR Light signaling pathway Grape
AT4G20370 TSF, TWIN SISTER OF FT TAIR Ambient temperature pathway, Flowering pathway integrator
AT4G22950 AGAMOUS-LIKE 19, AGL19, GL19 TAIR Vernalization pathway
AT4G24540 AGAMOUS-LIKE 24, AGL24 TAIR Vernalization pathway
AT4G26000 PEP, PEPPER TAIR Vernalization pathway
AT4G29730 MSI5, NFC5, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C5 TAIR Ambient temperature pathway, Autonomous pathway
AT4G30200 VEL1, VERNALIZATION5/VIN3-LIKE 1, VIL2, VIN3-LIKE 2 TAIR Autonomous pathway, Vernalization pathway
AT4G34530 CIB1, CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1 TAIR Light signaling pathway
AT4G35050 MSI3, NFC3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3 TAIR Autonomous pathway, Vernalization pathway
AT4G35900 ATBZIP14, FD, FD-1 TAIR Ambient temperature pathway, Meristem identity
AT5G02810 APRR7, PRR7, PSEUDO-RESPONSE REGULATOR 7 TAIR Light signaling pathway
AT5G03840 TERMINAL FLOWER 1, TFL1 TAIR Ambient temperature pathway, Flowering pathway integrator Grape, Strawberry
AT5G08230 TAIR Vernalization pathway
AT5G08330 CCA1 HIKING EXPEDITION, CHE, TRANSCRIPTION FACTOR TCP21, TCP21 UniProtKB Light signaling pathway
AT5G10140 AGAMOUS-LIKE 25, AGL25, FLC, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F TAIR Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway Grape
AT5G13480 FY TAIR Autonomous pathway
AT5G15840 B-BOX DOMAIN PROTEIN 1, BBX1, CO, CONSTANS, FG TAIR Flowering pathway integrator, Light signaling pathway
AT5G15850 ATCOL1, B-BOX DOMAIN PROTEIN 2, BBX2, COL1, CONSTANS-LIKE 1 TAIR Flowering pathway integrator, Light signaling pathway
AT5G23150 ENHANCER OF AG-4 2, HUA2 TAIR Vernalization pathway
AT5G23280 TAIR Light signaling pathway
AT5G24470 APRR5, PRR5, PSEUDO-RESPONSE REGULATOR 5 TAIR Light signaling pathway
AT5G24930 ATCOL4, B-BOX DOMAIN PROTEIN 5, BBX5, COL4, CONSTANS-LIKE 4 TAIR Light signaling pathway
AT5G35840 PHYC, PHYTOCHROME C TAIR Light signaling pathway Grape
AT5G37055 ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING TAIR Vernalization pathway
AT5G39660 CDF2, CYCLING DOF FACTOR 2 TAIR Light signaling pathway
AT5G42790 ARS5, ARSENIC TOLERANCE 5, ATPSM30, PAF1, PROTEASOME ALPHA SUBUNIT F1 TAIR Vernalization pathway
AT5G48250 B-BOX DOMAIN PROTEIN 8, BBX8 TAIR Light signaling pathway
AT5G57360 ADAGIO 1, ADO1, FKF1-LIKE PROTEIN 2, FKL2, LKP1, LOV KELCH PROTEIN 1, ZEITLUPE, ZTL TAIR Light signaling pathway
AT5G57380 VERNALIZATION INSENSITIVE 3, VIN3 TAIR Autonomous pathway, Vernalization pathway
AT5G57660 ATCOL5, B-BOX DOMAIN PROTEIN 6, BBX6, COL5, CONSTANS-LIKE 5 TAIR Light signaling pathway
AT5G58230 ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, ATMSI1, MATERNAL EFFECT EMBRYO ARREST 70, MEE70, MSI1, MULTICOPY SUPRESSOR OF IRA1 TAIR Autonomous pathway, Vernalization pathway
AT5G59570 BOA, BROTHER OF LUX ARRHYTHMO TAIR Light signaling pathway
AT5G60100 APRR3, PRR3, PSEUDO-RESPONSE REGULATOR 3 TAIR Light signaling pathway
AT5G61380 APRR1, ATTOC1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, TOC1 TAIR Light signaling pathway
AT5G62430 CDF1, CYCLING DOF FACTOR 1 TAIR Light signaling pathway
AT5G65050 AGAMOUS-LIKE 31, AGL31, MADS AFFECTING FLOWERING 2, MAF2 TAIR Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway
AT5G65060 AGAMOUS-LIKE 70, AGL70, FCL3, MADS AFFECTING FLOWERING 3, MAF3 TAIR Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway
AT5G65070 AGAMOUS-LIKE 69, AGL69, FCL4, MADS AFFECTING FLOWERING 4, MAF4 TAIR Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway
AT5G65080 AGAMOUS-LIKE 68, AGL68, MADS AFFECTING FLOWERING 5, MAF5 TAIR Ambient temperature pathway, Flowering pathway integrator, Vernalization pathway
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