Difference between revisions of "JP Feb 18 16"
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| + | Drs. C & H findings: | ||
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| + | Euclidean distance correlations for clustering. Changed from z scale to absolute value. | ||
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| + | Then looked at correlation (1 - correlation), clustering was different, dendrogram was different. | ||
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| + | They are now working on supervised clustering; make csv to export gene names based on clustering. Given a seed gene, output correlated genes. | ||
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| + | * Transcription factors are not usually highly transcribed - small value; we look for things that are transcribed after feeding. | ||
Revision as of 18:48, 18 February 2016
Drs. C & H findings:
Euclidean distance correlations for clustering. Changed from z scale to absolute value.
Then looked at correlation (1 - correlation), clustering was different, dendrogram was different.
They are now working on supervised clustering; make csv to export gene names based on clustering. Given a seed gene, output correlated genes.
- Transcription factors are not usually highly transcribed - small value; we look for things that are transcribed after feeding.
