Difference between revisions of "TRNA Genes Check List 2009"

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'''tRNA 644031717: tRNA-Val'''
 
'''tRNA 644031717: tRNA-Val'''
 
   Megablast results in the nr/nt database showed a match with the following statistics:
 
   Megablast results in the nr/nt database showed a match with the following statistics:
     [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RYTV7DV01N&log%24=nucltop&blast_rank=4&list_uids=43459    Halobacterium cutirubrum transfer RNA-Val (GAC)]
+
     [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RYTV7DV01N&log%24=nucltop&blast_rank=4&list_uids=43459    Halobacterium cutirubrum transfer RNA-Val (GAC)]  
      E-value: 2e-18
+
    S = 99.0 bits (53)
      Query Coverage: 100%
+
    E-value = 2e-18
      Max Identity: 90%
+
    Query Coverage: 100%
 +
    Identities = 69/76 (90%)
 +
    Gaps = 3/76 (3%)
 +
    Strand=Plus/Plus
  
 
'''tRNA 644031821: tRNA-Gly'''
 
'''tRNA 644031821: tRNA-Gly'''
Line 10: Line 13:
 
     [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RZFNDE6014&log%24=nucltop&blast_rank=6&list_uids=174713 Halobacterium volcanii Gly-tRNA-1A]
 
     [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RZFNDE6014&log%24=nucltop&blast_rank=6&list_uids=174713 Halobacterium volcanii Gly-tRNA-1A]
 
     S = 69.8 bits (76)  
 
     S = 69.8 bits (76)  
     E-value: 1e-09
+
     E-value = 1e-09
 
     Query Coverage: 100%
 
     Query Coverage: 100%
 
     Identities = 58/71 (81%)
 
     Identities = 58/71 (81%)
Line 18: Line 21:
 
     [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RZFNDE6014&log%24=nucltop&blast_rank=7&list_uids=43445 Halobacterium cutirubrum transfer RNA-Gly (GCC)]   
 
     [http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=nucleotide&dopt=GenBank&RID=9RZFNDE6014&log%24=nucltop&blast_rank=7&list_uids=43445 Halobacterium cutirubrum transfer RNA-Gly (GCC)]   
 
     S = 69.8 bits (76)
 
     S = 69.8 bits (76)
     E-value: 1e-09
+
     E-value = 1e-09
 
     Query Coverage: 100%
 
     Query Coverage: 100%
 
     Identities = 58/71 (81%)
 
     Identities = 58/71 (81%)
 
     Gaps = 0/71 (0%)
 
     Gaps = 0/71 (0%)
 
     Strand=Plus/Plus
 
     Strand=Plus/Plus

Revision as of 16:56, 31 August 2009

tRNA 644031717: tRNA-Val

  Megablast results in the nr/nt database showed a match with the following statistics:
    Halobacterium cutirubrum transfer RNA-Val (GAC)    
    S = 99.0 bits (53)
    E-value = 2e-18
    Query Coverage: 100%
    Identities = 69/76 (90%)
    Gaps = 3/76 (3%)
    Strand=Plus/Plus

tRNA 644031821: tRNA-Gly

 Blastn results in the nr/nt database showed the following matches:
   Halobacterium volcanii Gly-tRNA-1A
    S = 69.8 bits (76) 
    E-value = 1e-09
    Query Coverage: 100%
    Identities = 58/71 (81%)
    Gaps = 0/71 (0%)
    Strand=Plus/Plus
    
   Halobacterium cutirubrum transfer RNA-Gly (GCC)   
    S = 69.8 bits (76)
    E-value = 1e-09
    Query Coverage: 100%
    Identities = 58/71 (81%)
    Gaps = 0/71 (0%)
    Strand=Plus/Plus