Difference between revisions of "Amino acids"
| Line 25: | Line 25: | ||
'''I = isoleucine'''<br> | '''I = isoleucine'''<br> | ||
| − | <br> | + | Appears to be complete<br> |
'''K = lysine'''<br> | '''K = lysine'''<br> | ||
| − | <br> | + | Appears to be complete for biosynthesis, very incomplete for degradation<br> |
'''L = leucine'''<br> | '''L = leucine'''<br> | ||
| − | <br> | + | Appears to be complete.<br> |
'''M = methionine'''<br> | '''M = methionine'''<br> | ||
| Line 61: | Line 61: | ||
'''V = valine'''<br> | '''V = valine'''<br> | ||
| − | <br> | + | Appears to be complete.<br> |
'''W = tryptophan'''<br> | '''W = tryptophan'''<br> | ||
Revision as of 15:30, 6 November 2008
A = alanine
The RAST KEGG viewer says there is no way to convert between pyruvate and alanine, however, the RAST spreadsheet calls enzyme 2.6.1.44
(an alanine-glyoxylate aminotransferase).
C = cysteine
D = aspartic acid
E = glutamic acid
F = phenylalanine
G = glycine
Appears to be missing EC numbers 2.6.1.44 and 1.4.4.2. The RAST spreadsheet calls 2.6.1.44.
H = histidine
Appears to be complete.
I = isoleucine
Appears to be complete
K = lysine
Appears to be complete for biosynthesis, very incomplete for degradation
L = leucine
Appears to be complete.
M = methionine
N = asparagine
Our organism appears to have no enzyme that makes L-aasparagine from L-aspartate (asparaginases). On the RAST spreadsheet, however, RAST calls an "asparagine family protein" in bps from 1139281-1140141.
P = proline
Appears to be complete.
Q = glutamine
Appears to be fairly complete when compared with Haloarcula marismortui, with exceptions being a missing NAD synthase (EC 6.3.5.1), and a carbamoyl-phosphate synthetase (EC 6.3.4.16). A glutamyl-tRNA(Gln) amidotransferase subunit (EC 6.3.5.7) appears to be missing, but the RAST spreadsheet calls several glutamyl-tRNA amidotransferase subunits, listing the EC as 6.3.5.-.
R = arginine
Appears to be complete.
S = serine
Matches Haloarcula marismortui, except in RAST KEGG diagram, it appears to be missing enzyme 2.7.8.8, which is a CDP-diacylglycerol-serine O-phosphatidyltransferase. However, according to the RAST spreadsheet, there is a CDP-diacylglycerol-serine O-phosphatidyltransferase from bps 1440328-1439621.
T = threonine
Appears to be complete.
V = valine
Appears to be complete.
W = tryptophan
Y = tyrosine
