Difference between revisions of "Amino acids"
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'''A = alanine'''<br> | '''A = alanine'''<br> | ||
| + | The RAST KEGG viewer says there is no way to convert between pyruvate and alanine, however, the RAST spreadsheet calls enzyme 2.6.1.44 | ||
| + | (an alanine-glyoxylate aminotransferase). | ||
<br> | <br> | ||
| + | |||
'''C = cysteine'''<br> | '''C = cysteine'''<br> | ||
<br> | <br> | ||
| + | |||
'''D = aspartic acid'''<br> | '''D = aspartic acid'''<br> | ||
<br> | <br> | ||
| + | |||
'''E = glutamic acid'''<br> | '''E = glutamic acid'''<br> | ||
<br> | <br> | ||
| + | |||
'''F = phenylalanine'''<br> | '''F = phenylalanine'''<br> | ||
<br> | <br> | ||
| + | |||
'''G = glycine'''<br> | '''G = glycine'''<br> | ||
| + | Appears to be missing EC numbers 2.6.1.44 and 1.4.4.2. The RAST spreadsheet calls 2.6.1.44. | ||
<br> | <br> | ||
| + | |||
'''H = histidine'''<br> | '''H = histidine'''<br> | ||
| + | Appears to be complete. | ||
<br> | <br> | ||
| + | |||
'''I = isoleucine'''<br> | '''I = isoleucine'''<br> | ||
| − | <br> | + | Appears to be complete.<br> |
| + | |||
'''K = lysine'''<br> | '''K = lysine'''<br> | ||
| − | <br> | + | Appears to be complete.<br> |
| + | |||
'''L = leucine'''<br> | '''L = leucine'''<br> | ||
| − | <br> | + | Appears to be complete.<br> |
| + | |||
'''M = methionine'''<br> | '''M = methionine'''<br> | ||
<br> | <br> | ||
| + | |||
'''N = asparagine'''<br> | '''N = asparagine'''<br> | ||
| + | Our organism appears to have no enzyme that makes L-aasparagine from L-aspartate (asparaginases). On the RAST spreadsheet, however, RAST calls an "asparagine family protein" in bps from 1139281-1140141 (EC 6.3.5.4). | ||
<br> | <br> | ||
| + | |||
'''P = proline'''<br> | '''P = proline'''<br> | ||
| + | Appears that it can be synthesized from argine, but cannot be synthesized on its own. | ||
<br> | <br> | ||
| + | |||
'''Q = glutamine'''<br> | '''Q = glutamine'''<br> | ||
| − | Appears to be fairly complete when compared with Haloarcula marismortui, with | + | Appears to be fairly complete when compared with Haloarcula marismortui, with exceptions being a missing NAD synthase (EC 6.3.5.1), semialdehyde dehydrogenase (EC1.2.1.16), a 4-aminobutyrate aminotransferase (EC 2.6.1.19), and a carbamoyl-phosphate synthetase (EC 6.3.4.16). A glutamyl-tRNA(Gln) amidotransferase subunit (EC 6.3.5.7) appears to be missing, but the RAST spreadsheet calls several glutamyl-tRNA amidotransferase subunits, listing the EC as 6.3.5.-. Also, an arginine decarboxylase (EC 4.1.1.19) appears to be missing, but the RAST spreadsheet calls an arginine decarboxylase with this EC number. |
<br> | <br> | ||
| + | |||
'''R = arginine'''<br> | '''R = arginine'''<br> | ||
| + | Can produce from proline, but does not appear to be able to synthesize arginine on its own. | ||
<br> | <br> | ||
| + | |||
'''S = serine'''<br> | '''S = serine'''<br> | ||
| + | Matches Haloarcula marismortui, except in RAST KEGG diagram, it appears to be missing enzyme 2.7.8.8, which is a CDP-diacylglycerol-serine O-phosphatidyltransferase. However, according to the RAST spreadsheet, there is a CDP-diacylglycerol-serine O-phosphatidyltransferase from bps 1440328-1439621. | ||
<br> | <br> | ||
| + | |||
'''T = threonine'''<br> | '''T = threonine'''<br> | ||
| + | Appears to be complete. | ||
<br> | <br> | ||
| + | |||
'''V = valine'''<br> | '''V = valine'''<br> | ||
| − | <br> | + | Appears to be complete.<br> |
| + | |||
'''W = tryptophan'''<br> | '''W = tryptophan'''<br> | ||
<br> | <br> | ||
| + | |||
'''Y = tyrosine'''<br> | '''Y = tyrosine'''<br> | ||
<br> | <br> | ||
Latest revision as of 16:16, 6 November 2008
A = alanine
The RAST KEGG viewer says there is no way to convert between pyruvate and alanine, however, the RAST spreadsheet calls enzyme 2.6.1.44
(an alanine-glyoxylate aminotransferase).
C = cysteine
D = aspartic acid
E = glutamic acid
F = phenylalanine
G = glycine
Appears to be missing EC numbers 2.6.1.44 and 1.4.4.2. The RAST spreadsheet calls 2.6.1.44.
H = histidine
Appears to be complete.
I = isoleucine
Appears to be complete.
K = lysine
Appears to be complete.
L = leucine
Appears to be complete.
M = methionine
N = asparagine
Our organism appears to have no enzyme that makes L-aasparagine from L-aspartate (asparaginases). On the RAST spreadsheet, however, RAST calls an "asparagine family protein" in bps from 1139281-1140141 (EC 6.3.5.4).
P = proline
Appears that it can be synthesized from argine, but cannot be synthesized on its own.
Q = glutamine
Appears to be fairly complete when compared with Haloarcula marismortui, with exceptions being a missing NAD synthase (EC 6.3.5.1), semialdehyde dehydrogenase (EC1.2.1.16), a 4-aminobutyrate aminotransferase (EC 2.6.1.19), and a carbamoyl-phosphate synthetase (EC 6.3.4.16). A glutamyl-tRNA(Gln) amidotransferase subunit (EC 6.3.5.7) appears to be missing, but the RAST spreadsheet calls several glutamyl-tRNA amidotransferase subunits, listing the EC as 6.3.5.-. Also, an arginine decarboxylase (EC 4.1.1.19) appears to be missing, but the RAST spreadsheet calls an arginine decarboxylase with this EC number.
R = arginine
Can produce from proline, but does not appear to be able to synthesize arginine on its own.
S = serine
Matches Haloarcula marismortui, except in RAST KEGG diagram, it appears to be missing enzyme 2.7.8.8, which is a CDP-diacylglycerol-serine O-phosphatidyltransferase. However, according to the RAST spreadsheet, there is a CDP-diacylglycerol-serine O-phosphatidyltransferase from bps 1440328-1439621.
T = threonine
Appears to be complete.
V = valine
Appears to be complete.
W = tryptophan
Y = tyrosine
