Blasting Spacers for Our Genome

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[[Image:spacerEight.jpg]] [[Image:spacerEight.jpg]]
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 +E-values not good- no significant hits!
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 +Spacer Nine:

Revision as of 17:27, 5 November 2009

Blasting Spacers

CRISPR one results from CRISPR finder are shown below. I blasted all of the spacers using the nr/nt database and the results are shown below.

Image:crisperOne.jpg


Spacer One: TGCGTCGTCCGGTGGCCGTCAATAAATGTCGCAAGGG

Image:spacerOne.jpg

Matches by chance!

Spacer Two: TCCTACGACCTCGTCGGCGTCAACGGCTGGCCCGA

Image:spacerTwo.jpg

Spacer Three: CACCCTACAACAGGTGAAATCTACCAGACAAAAGA

Image:spacerThree.jpg

Spacer Four: TCACCCAAGCGCAAGCAACAGCTGATCGAGGACCTG

Image:spacerFour.jpg Image:spacerFourTwo.jpg

Spacer Five: GCGACGGCGGCCAGTTCCGCGAGGGCGGGAAGGTCC

Image:spacerFive.jpg

This image is only part of it. . .

Image:spacerFiveTwo.jpg


NOTE: lots of hits from each organism- indicates that multiple parts have been incorporated into our species' spacers. . . interesting to study what genes have been inserted

Spacer Six: TGCGAGTGTTGCGGGGAACCGACTCGGGTAGGCCAG

Image:spacerSix.jpg

No viral insertions in this spacer

Spacer Seven: ACGGTTTCGCTACCACCATCGCCACCAGCAACTGCCG

Image:spacerSeven.jpg

Spacer Eight: GACGAGTATGCCAACCGGCTCGTGAGCGGGCGC

Image:spacerEight.jpg

E-values not good- no significant hits!

Spacer Nine:

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