Difference between revisions of "CRISPR info"
| Line 4: | Line 4: | ||
CRISPR id : tmp_1_Crispr_12 | CRISPR id : tmp_1_Crispr_12 | ||
| − | START crispr position : 2723382 | + | START crispr position : 2723382 |
| + | END crispr position : 2725579 | ||
| + | Crispr length : 2197 | ||
DR consensus : GTTTCAGACGGACCCTTGTGGGATTGAAGC DR length : 30 | DR consensus : GTTTCAGACGGACCCTTGTGGGATTGAAGC DR length : 30 | ||
Number of spacers : 33 | Number of spacers : 33 | ||
CRISPR id : tmp_2_Crispr_1 | CRISPR id : tmp_2_Crispr_1 | ||
| − | START crispr position : 31920 | + | START crispr position : 31920 |
| + | END crispr position : 34849 | ||
| + | Crispr length : 2929 | ||
DR consensus : GCTTCAATCCCACAAGGGTCCGTCTGAAAC DR length : 30 | DR consensus : GCTTCAATCCCACAAGGGTCCGTCTGAAAC DR length : 30 | ||
Number of spacers : 44 | Number of spacers : 44 | ||
| Line 16: | Line 20: | ||
CRISPR id : tmp_1_PossibleCrispr_1 | CRISPR id : tmp_1_PossibleCrispr_1 | ||
| − | START crispr position : 451036 | + | START crispr position : 451036 |
| + | END crispr position : 451146 | ||
| + | Crispr length : 110 | ||
DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 | DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 | ||
Number of spacers : 1 | Number of spacers : 1 | ||
CRISPR id : tmp_1_PossibleCrispr_2 | CRISPR id : tmp_1_PossibleCrispr_2 | ||
| − | START crispr position : 451266 | + | START crispr position : 451266 |
| + | END crispr position : 451422 | ||
| + | Crispr length : 156 | ||
DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 | DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 | ||
Number of spacers : 2 | Number of spacers : 2 | ||
| Line 27: | Line 35: | ||
CRISPR id : tmp_1_PossibleCrispr_3 | CRISPR id : tmp_1_PossibleCrispr_3 | ||
| − | START crispr position : 723910 | + | START crispr position : 723910 |
| + | END crispr position : 724040 | ||
| + | Crispr length : 130 | ||
DR consensus : CCGCCCGAACACGCCGGTCCCGACCACGAGAACGAGAC DR length : 38 | DR consensus : CCGCCCGAACACGCCGGTCCCGACCACGAGAACGAGAC DR length : 38 | ||
Number of spacers : 1 | Number of spacers : 1 | ||
RISPR id : tmp_1_PossibleCrispr_4 | RISPR id : tmp_1_PossibleCrispr_4 | ||
| − | START crispr position : 775514 | + | START crispr position : 775514 |
| + | END crispr position : 775595 | ||
| + | Crispr length : 81 | ||
DR consensus : TGATTCGCCCAGCGAGCGCGTTCGTG DR length : 26 | DR consensus : TGATTCGCCCAGCGAGCGCGTTCGTG DR length : 26 | ||
Number of spacers : 1 | Number of spacers : 1 | ||
| Line 38: | Line 50: | ||
CRISPR id : tmp_1_PossibleCrispr_5 | CRISPR id : tmp_1_PossibleCrispr_5 | ||
| − | START crispr position : 1587713 | + | START crispr position : 1587713 |
| + | END crispr position : 1587871 | ||
| + | Crispr length : 158 | ||
DR consensus : TCGAAGGGGCTGTCGCTGTCGGTG DR length : 24 | DR consensus : TCGAAGGGGCTGTCGCTGTCGGTG DR length : 24 | ||
Number of spacers : 2 | Number of spacers : 2 | ||
| Line 45: | Line 59: | ||
CRISPR id : tmp_1_PossibleCrispr_6 | CRISPR id : tmp_1_PossibleCrispr_6 | ||
| − | START crispr position : 1635784 | + | START crispr position : 1635784 |
| + | END crispr position : 1635940 | ||
| + | Crispr length : 156 | ||
DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 | DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 | ||
Number of spacers : 2 | Number of spacers : 2 | ||
| Line 51: | Line 67: | ||
CRISPR id : tmp_1_PossibleCrispr_7 | CRISPR id : tmp_1_PossibleCrispr_7 | ||
| − | START crispr position : 1733154 | + | START crispr position : 1733154 |
| + | END crispr position : 1733268 | ||
| + | Crispr length : 114 | ||
DR consensus : GTTCGCCGGACCGTGTGGGTGTCG DR length : 24 | DR consensus : GTTCGCCGGACCGTGTGGGTGTCG DR length : 24 | ||
Number of spacers : 2 | Number of spacers : 2 | ||
CRISPR id : tmp_1_PossibleCrispr_8 | CRISPR id : tmp_1_PossibleCrispr_8 | ||
| − | START crispr position : 2087618 | + | START crispr position : 2087618 |
| + | END crispr position : 2087725 | ||
| + | Crispr length : 107 | ||
DR consensus : AGCGCCGGGCGACGACGGGCCAGC DR length : 24 | DR consensus : AGCGCCGGGCGACGACGGGCCAGC DR length : 24 | ||
Number of spacers : 1 | Number of spacers : 1 | ||
CRISPR id : tmp_1_PossibleCrispr_9 | CRISPR id : tmp_1_PossibleCrispr_9 | ||
| − | START crispr position : 2127953 | + | START crispr position : 2127953 |
| + | END crispr position : 2128039 | ||
| + | Crispr length : 86 | ||
DR consensus : CGCTCGCTTCGAGGGCCGACACTCGCT DR length : 27 | DR consensus : CGCTCGCTTCGAGGGCCGACACTCGCT DR length : 27 | ||
Number of spacers : 1 | Number of spacers : 1 | ||
| Line 67: | Line 89: | ||
CRISPR id : tmp_1_PossibleCrispr_10 | CRISPR id : tmp_1_PossibleCrispr_10 | ||
| − | START crispr position : 2206888 | + | START crispr position : 2206888 |
| + | END crispr position : 2206968 | ||
| + | Crispr length : 80 | ||
DR consensus : CAGTCCAGTGAGGCGTCTCGTCGTCG DR length : 26 | DR consensus : CAGTCCAGTGAGGCGTCTCGTCGTCG DR length : 26 | ||
Number of spacers : 1 | Number of spacers : 1 | ||
CRISPR id : tmp_1_PossibleCrispr_11 | CRISPR id : tmp_1_PossibleCrispr_11 | ||
| − | START crispr position : 2293949 | + | START crispr position : 2293949 |
| + | END crispr position : 2294199 | ||
| + | Crispr length : 250 | ||
DR consensus : CGTTCGCAGCAAAACGGGCCGGAAGGGATTTGAACC DR length : 36 | DR consensus : CGTTCGCAGCAAAACGGGCCGGAAGGGATTTGAACC DR length : 36 | ||
Number of spacers : 2 | Number of spacers : 2 | ||
Revision as of 15:08, 29 October 2009
Found on CRISPRFInder:
Two confirmed CRISPRs:
CRISPR id : tmp_1_Crispr_12 START crispr position : 2723382 END crispr position : 2725579 Crispr length : 2197 DR consensus : GTTTCAGACGGACCCTTGTGGGATTGAAGC DR length : 30 Number of spacers : 33
CRISPR id : tmp_2_Crispr_1 START crispr position : 31920 END crispr position : 34849
Crispr length : 2929
DR consensus : GCTTCAATCCCACAAGGGTCCGTCTGAAAC DR length : 30 Number of spacers : 44
11 Questionable CRISPRs:
CRISPR id : tmp_1_PossibleCrispr_1 START crispr position : 451036 END crispr position : 451146 Crispr length : 110 DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_2 START crispr position : 451266 END crispr position : 451422
Crispr length : 156
DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 Number of spacers : 2
CRISPR id : tmp_1_PossibleCrispr_3
START crispr position : 723910
END crispr position : 724040
Crispr length : 130
DR consensus : CCGCCCGAACACGCCGGTCCCGACCACGAGAACGAGAC DR length : 38 Number of spacers : 1
RISPR id : tmp_1_PossibleCrispr_4 START crispr position : 775514 END crispr position : 775595 Crispr length : 81 DR consensus : TGATTCGCCCAGCGAGCGCGTTCGTG DR length : 26 Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_5
START crispr position : 1587713
END crispr position : 1587871
Crispr length : 158
DR consensus : TCGAAGGGGCTGTCGCTGTCGGTG DR length : 24
Number of spacers : 2
CRISPR id : tmp_1_PossibleCrispr_6 START crispr position : 1635784 END crispr position : 1635940 Crispr length : 156 DR consensus : CCTCGACCGTGTCGGCCGCGCCGCC DR length : 25 Number of spacers : 2
CRISPR id : tmp_1_PossibleCrispr_7
START crispr position : 1733154
END crispr position : 1733268
Crispr length : 114
DR consensus : GTTCGCCGGACCGTGTGGGTGTCG DR length : 24
Number of spacers : 2
CRISPR id : tmp_1_PossibleCrispr_8 START crispr position : 2087618 END crispr position : 2087725 Crispr length : 107 DR consensus : AGCGCCGGGCGACGACGGGCCAGC DR length : 24 Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_9 START crispr position : 2127953 END crispr position : 2128039
Crispr length : 86
DR consensus : CGCTCGCTTCGAGGGCCGACACTCGCT DR length : 27 Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_10
START crispr position : 2206888
END crispr position : 2206968
Crispr length : 80
DR consensus : CAGTCCAGTGAGGCGTCTCGTCGTCG DR length : 26
Number of spacers : 1
CRISPR id : tmp_1_PossibleCrispr_11 START crispr position : 2293949 END crispr position : 2294199 Crispr length : 250 DR consensus : CGTTCGCAGCAAAACGGGCCGGAAGGGATTTGAACC DR length : 36 Number of spacers : 2
