General Statistical Calculation Tool

From GcatWiki

Revision as of 18:08, 31 May 2011 by Letaylor (talk | contribs) (Created page with '=Features= ==Calculate Distribution of Read Lengths== ==Calculate How Many Substrings== *http://genometools.org/index.html - for both k-mer calculation tool and substring tool ==…')

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Jump to: navigation, search

Contents

1 Features

Features

Calculate Distribution of Read Lengths

Calculate How Many Substrings

http://genometools.org/index.html - for both k-mer calculation tool and substring tool

Calculate N50

Calculate GC Content

Calculate k-mer Distributions

http://genometools.org/index.html - for both k-mer calculation tool and substring tool
Jellyfish - more recent k-mer counting tool

Estimate Genome Size

http://seqanswers.com/forums/showthread.php?t=11434

Retrieved from "https://gcat.davidson.edu/GcatWiki/index.php?title=General_Statistical_Calculation_Tool&oldid=13059"

Navigation menu