Difference between revisions of "JP Mar 17 16"

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Wrote our first status report after our oral presentation on the 15th.  
 
Wrote our first status report after our oral presentation on the 15th.  
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GO Slim:
 
GO Slim:
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Resource:
 
Resource:
  
Map2Slim option in OWLTools: "Given a GO slim file, and a current ontology (in one or more files), the Map2Slim script will map a gene association file (containing annotations to the full GO) to the terms in the GO slim. This script is an option of OWLTools, and it can be used to either create a new gene association file, which contains the most pertinent GO slim accessions, or in count-mode, in which case it will give distinct gene product counts for each slim term."
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Map2Slim option in OWLTools: "Given a GO slim file, and a current ontology (in one or more files), the Map2Slim script will map a gene association file (containing annotations to the full GO) to the terms in the GO slim.  
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*this doesn't work on school computers
  
 
http://geneontology.org/page/go-slim-and-subset-guide
 
http://geneontology.org/page/go-slim-and-subset-guide

Revision as of 17:59, 17 March 2016

Julia Preziosi

Wrote our first status report after our oral presentation on the 15th.


GO Slim:

Want to map the whole transcriptome (relative expressions?) GO Slim terms and compare to gene of interest (relative expression?) GO Slim terms.


Resource:

Map2Slim option in OWLTools: "Given a GO slim file, and a current ontology (in one or more files), the Map2Slim script will map a gene association file (containing annotations to the full GO) to the terms in the GO slim.

  • this doesn't work on school computers

http://geneontology.org/page/go-slim-and-subset-guide