Difference between revisions of "JP Mar 17 16"

Revision as of 18:05, 17 March 2016

Julia Preziosi

Wrote our first status report after our oral presentation on the 15th.

GO Slim:

Want to map the whole transcriptome (relative expressions?) GO Slim terms and compare to gene of interest (relative expression?) GO Slim terms.

Resources:

Map2Slim option in OWLTools: "Given a GO slim file, and a current ontology (in one or more files), the Map2Slim script will map a gene association file (containing annotations to the full GO) to the terms in the GO slim.

• this doesn't work on school computers

http://geneontology.org/page/go-slim-and-subset-guide

CateGOrizer

http://www.animalgenome.org/bioinfo/tools/catego/

g:

http://biit.cs.ut.ee/gprofiler/gconvert.cgi