Ky Roland

• 25 and 24 = paired reads, Male mouse 2078, C201R
  

23 and 22 = paired reads, Female mouse 2077, WT
21 and 20 = paired reads, Male mouse 2076, WT
19 and 18 = paired reads, Male mouse 2075, WT
17 and 16 = paired reads, Male mouse 2074, WT

• 15 and 14 = paired reads, Male mouse 2073, C201R
  
• 13 and 12 = paired reads, Female mouse 2072, C201R
  
• 11 and 10 = paired reads, Female mouse 2071, C201R
  
• 9 and 8 = paired reads, Female mouse 2070, C201R
  

7 and 6 = paired reads, Female mouse 2081, WT
5 and 4 = paired reads, Female mouse 2080, WT

• 3 and 2 = paired reads, Male mouse 2079, C201R
  

DESeq2- Comparison of WT vs. Mutant Females: Named-Types

• Mutant will be in numerator, and WT will be int he denominator; a number > 1 will mean that there is an overexertion in the wild type.
• We should not expect differential expression because the papers showed no significant differential mRNA expression between the mutant and wild type.