Difference between revisions of "Leland & Will"
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- Lignin: role with phenolics, wine, etc. | - Lignin: role with phenolics, wine, etc. | ||
| + | |||
| + | |||
| + | ################ | ||
| + | # Easier Blast # | ||
| + | ################ | ||
| + | /usr/local/ncbi/blast/bin/blastn -query arabchloro.fasta -db bb_latest_assembly.fasta -outfmt "7 qacc sacc evalue qstart qend sstart send" -gapextend 2 -gapopen 5 -penalty -3 -reward 2 -evalue 10 -word_size 11 -template_length 18 -template_type coding | ||
| + | |||
| + | ################# | ||
| + | # Easiest Blast # | ||
| + | ################# | ||
| + | /usr/local/ncbi/blast/bin/blastn -query arabchloro.fasta -db bb_latest_assembly.fasta -outfmt "7 qacc sacc evalue qstart qend sstart send" -gapextend 2 -gapopen 5 -penalty -3 -reward 2 -evalue 10 -word_size 11 | ||
Revision as of 15:26, 8 March 2011
- MYB transcription factors
- P450s function and role in blueberries
- cultivation of blueberry genome duplication (starting point)
- RNA
- Genome Analysis: codon bias, GC skew, pH pathways/sources, genome comparisons (Arabidopsis, etc.)
- Circadian rhythms ([1])
- GC content of exons/introns
- Lignin: role with phenolics, wine, etc.
- Easier Blast #
/usr/local/ncbi/blast/bin/blastn -query arabchloro.fasta -db bb_latest_assembly.fasta -outfmt "7 qacc sacc evalue qstart qend sstart send" -gapextend 2 -gapopen 5 -penalty -3 -reward 2 -evalue 10 -word_size 11 -template_length 18 -template_type coding
- Easiest Blast #
/usr/local/ncbi/blast/bin/blastn -query arabchloro.fasta -db bb_latest_assembly.fasta -outfmt "7 qacc sacc evalue qstart qend sstart send" -gapextend 2 -gapopen 5 -penalty -3 -reward 2 -evalue 10 -word_size 11
