Leland & Will

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- MYB transcription factors

- P450s function and role in blueberries

- cultivation of blueberry genome duplication (starting point)

- RNA

- Genome Analysis: codon bias, GC skew, pH pathways/sources, genome comparisons (Arabidopsis, etc.)

- Circadian rhythms ([1])

- GC content of exons/introns

- Lignin: role with phenolics, wine, etc.



  1. Easier Blast

/usr/local/ncbi/blast/bin/blastn -query arabchloro.fasta -db bb_latest_assembly.fasta -outfmt "7 qacc sacc evalue qstart qend sstart send" -gapextend 2 -gapopen 5 -penalty -3 -reward 2 -evalue 10 -word_size 11 -template_length 18 -template_type coding


  1. Easiest Blast

/usr/local/ncbi/blast/bin/blastn -query arabchloro.fasta -db bb_latest_assembly.fasta -outfmt "7 qacc sacc evalue qstart qend sstart send" -gapextend 2 -gapopen 5 -penalty -3 -reward 2 -evalue 10 -word_size 11