Difference between revisions of "Mouse Charcot-Marie-Tooth type 2D RNAseq Project"
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This is the page for Bio343 at Davidson College, spring 2018. | This is the page for Bio343 at Davidson College, spring 2018. | ||
| − | + | This group of 10 colleagues will investigate molecular causes for Charcot-Marie-Tooth type 2D disease as part of Davidson's [http://www.bio.davidson.edu/Courses/Bio343/LabMethods_2018.html Laboratory Methods in Genomics] class. They are collaborating with [https://www.jax.org/research-and-faculty/research-labs/the-burgess-lab Emily Spaulding and Rob Burgess] at Jackson Laboratory (JAX) in Bar Harbor Maine. | |
| + | |||
| + | * [[Aiko Chamby]] | ||
| + | * [[Itzy Cuellar]] | ||
| + | * [[Vivienne Fang]] | ||
| + | * [[Stephanie Hautamaa]] | ||
| + | * [[Owen Koucky]] | ||
| + | * [[Jonah Mische]] | ||
| + | * [[Jenna Reed]] | ||
| + | * [[Ky Roland]] | ||
| + | * [[Malcolm Campbell]] | ||
| + | * [[Debbie Thurtle-Schmidt]] | ||
| + | |||
| + | Teams | ||
| + | * [[Aiko and Jenna]] | ||
| + | * [[Owen and Vivienne]] | ||
| + | * [[Stephanie and Ky]] | ||
| + | * [[Jonah and Itzy]] | ||
| + | * [[Debbie and Malcolm]] | ||
| + | |||
| + | |||
| + | == ''C. elegans'' ''nhr-25'' experiments == | ||
| + | '''Ready to upload to your Galaxy site:'''<br> | ||
| + | our 1 = her 60 = gene set for mapping<br> | ||
| + | our 2 & 3 = her 51 = N2 #2 <br> | ||
| + | our 4 & 5 = her 52 = ku217 #2<br> | ||
| + | our 6 & 7 = her 53 = nhr-25(RNAi) #3<br> | ||
| + | our 8 & 9 = her 54 = nhr-25(RNAi) #1<br> | ||
| + | our 10 & 11 = her 55 = nhr-25(RNAi) #2<br> | ||
| + | our 12 & 13 = her 56 = ku217 #3<br> | ||
| + | our 14 & 15 = her 57 = N2 #3<br> | ||
| + | our 16 & 17 = her 58 = N2 #1<br> | ||
| + | our 18 & 19 = her 59 = ku217 #1<br> | ||
| + | |||
| + | These values are ready for DESeq2 analysis. <br> | ||
Latest revision as of 18:34, 16 March 2018
This is the page for Bio343 at Davidson College, spring 2018.
This group of 10 colleagues will investigate molecular causes for Charcot-Marie-Tooth type 2D disease as part of Davidson's Laboratory Methods in Genomics class. They are collaborating with Emily Spaulding and Rob Burgess at Jackson Laboratory (JAX) in Bar Harbor Maine.
- Aiko Chamby
- Itzy Cuellar
- Vivienne Fang
- Stephanie Hautamaa
- Owen Koucky
- Jonah Mische
- Jenna Reed
- Ky Roland
- Malcolm Campbell
- Debbie Thurtle-Schmidt
Teams
C. elegans nhr-25 experiments
Ready to upload to your Galaxy site:
our 1 = her 60 = gene set for mapping
our 2 & 3 = her 51 = N2 #2
our 4 & 5 = her 52 = ku217 #2
our 6 & 7 = her 53 = nhr-25(RNAi) #3
our 8 & 9 = her 54 = nhr-25(RNAi) #1
our 10 & 11 = her 55 = nhr-25(RNAi) #2
our 12 & 13 = her 56 = ku217 #3
our 14 & 15 = her 57 = N2 #3
our 16 & 17 = her 58 = N2 #1
our 18 & 19 = her 59 = ku217 #1
These values are ready for DESeq2 analysis.
