Difference between revisions of "Mouse Charcot-Marie-Tooth type 2D RNAseq Project"

Latest revision as of 18:34, 16 March 2018

This is the page for Bio343 at Davidson College, spring 2018.

This group of 10 colleagues will investigate molecular causes for Charcot-Marie-Tooth type 2D disease as part of Davidson's Laboratory Methods in Genomics class. They are collaborating with Emily Spaulding and Rob Burgess at Jackson Laboratory (JAX) in Bar Harbor Maine.

• Aiko Chamby
• Itzy Cuellar
• Vivienne Fang
• Stephanie Hautamaa
• Owen Koucky
• Jonah Mische
• Jenna Reed
• Ky Roland
• Malcolm Campbell
• Debbie Thurtle-Schmidt

Teams

• Aiko and Jenna
• Owen and Vivienne
• Stephanie and Ky
• Jonah and Itzy
• Debbie and Malcolm

C. elegans nhr-25 experiments

Ready to upload to your Galaxy site:
our 1 = her 60 = gene set for mapping
our 2 & 3 = her 51 = N2 #2
our 4 & 5 = her 52 = ku217 #2
our 6 & 7 = her 53 = nhr-25(RNAi) #3
our 8 & 9 = her 54 = nhr-25(RNAi) #1
our 10 & 11 = her 55 = nhr-25(RNAi) #2
our 12 & 13 = her 56 = ku217 #3
our 14 & 15 = her 57 = N2 #3
our 16 & 17 = her 58 = N2 #1
our 18 & 19 = her 59 = ku217 #1

These values are ready for DESeq2 analysis.