Difference between revisions of "Notes 2/16/16"
| Line 11: | Line 11: | ||
Snake 4: SLC6A19, SLC15A1, (SLC1A5 very low expression) | Snake 4: SLC6A19, SLC15A1, (SLC1A5 very low expression) | ||
| − | Snake 5: SLC15A1 | + | Snake 5: SLC15A1, fairly high expression of SLC6A19, (SLC1A5 very low expression) |
| − | Snake 6: SLC15A1 | + | Snake 6: SLC15A1, SLC6A19, (SLC1A5 very low expression) |
'''Housekeeping genes''' | '''Housekeeping genes''' | ||
Revision as of 19:08, 18 February 2016
Looking for housekeeping intestine genes so that we can make sure our samples are accurate
over-expressed sequences match:
Snake 1: matches with an mRNA sequence from an intestine sample of an elephant fish, SLC15A1, SLC6A19
Snake 2: SLC15A1
Snake 3: SLC15A1, SLC6A19, (SLC1A5 very very low expression, might just mean that duodenum or ileum)
Snake 4: SLC6A19, SLC15A1, (SLC1A5 very low expression)
Snake 5: SLC15A1, fairly high expression of SLC6A19, (SLC1A5 very low expression)
Snake 6: SLC15A1, SLC6A19, (SLC1A5 very low expression)
Housekeeping genes
BOAT1 (SLC6A19) solute carrier family 6 (neutral amino acid transporter), member 19, mRNA (housekeeping gene BOAT1) found in intestine and kidney
SLC15A1 protein coding gene: encodes an intestinal hydrogen peptide cotransporter that is a member of the solute carrier family 15
ASCT2 (SLC1A5) expressed in the kidney but expression is high in the jejunum and colon but lower in duodenum and ileum
