Difference between revisions of "PH Regulation"
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The literature suggests that a antiporters, specifically a Na+/H+ antiporter, are responsible for controlling pH within cells. [http://www.ncbi.nlm.nih.gov/pubmed/6325586 1][http://bass.bio.uci.edu/~hudel/m160/presentations/3_antiporter.pdf 2] | The literature suggests that a antiporters, specifically a Na+/H+ antiporter, are responsible for controlling pH within cells. [http://www.ncbi.nlm.nih.gov/pubmed/6325586 1][http://bass.bio.uci.edu/~hudel/m160/presentations/3_antiporter.pdf 2] | ||
| − | As noted in a 2002 article, "Proton fluxes at the plasma membrane are regulated by several families of ion exchangers, including the Na+/H+ exchangers(NHEs) and HCO3 transporters, such as the Na+/HCO-3- cotransporters (NBCs), Cl−/HCO−3 exchangers (AEs), and the Na+ driven Cl−/HCO−3- exchanger (NDAE). | + | As noted in a 2002 article, "Proton fluxes at the plasma membrane are regulated by several families of ion exchangers, including the Na+/H+ exchangers(NHEs) and HCO3 transporters, such as the Na+/HCO-3- cotransporters (NBCs), Cl−/HCO−3 exchangers (AEs), and the Na+ driven Cl−/HCO−3- exchanger (NDAE). [http://www.annualreviews.org/doi/pdf/10.1146/annurev.pharmtox.42.092001.143801 3] |
| − | NHEs are the most widely discussed antiporters in relation to pH. There are six members of the NHE family and they are evolutionarily conserved. NHE1 is responsible for "pH and cell-volume homeostasis." It is made up of approximately 820 amino acids and is similar in structure to other ion exchangers. | + | NHEs are the most widely discussed antiporters in relation to pH. There are six members of the NHE family and they are evolutionarily conserved. NHE1 is responsible for "pH and cell-volume homeostasis." It is made up of approximately 820 amino acids and is similar in structure to other ion exchangers. The most highly conserved regions of this protein are TM 6 and 7. |
| − | + | While NHEs play a role in shaping intracellular pH, they themselves are regulated by pH: | |
| + | "NHE1 is highly sensitive to changes in intracellular H+ (H+i ), such that reduced pHi allosterically activates the protein (46). Hence, the kinetics of NHE activity in response to H+ is more complex than that observed for extracellular substrates. NHE1, NHE2, and NHE3 are extremely sensitive to low pHi. At physiological pH, NHE1 and NHE2 are essentially inactive, but they are rapidly activated upon reduction in pH (38, 46), whereas NHE3 is active at neutral pHi because it has a higher affinity for H+," [http://www.annualreviews.org/doi/pdf/10.1146/annurev.pharmtox.42.092001.143801 3] | ||
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| + | Other ion exchangers noted to have a key role in pH are AE1 and NBC1. | ||
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| + | In studying the blueberry genome, we should look for these key pH-regulating proteins and note any differences. Are the same regions highly conserved? Are key binding regions different in blueberry? | ||
The main antiporter in bacteria has been identified as NhaA. [http://bass.bio.uci.edu/~hudel/m160/presentations/3_antiporter.pdf 2] This protein "uses the electrochemical proton gradient maintained across the bacterial membrane and excretes Na+ in exchange for a 'downhill' flow of protons into the cell." [http://bass.bio.uci.edu/~hudel/m160/presentations/3_antiporter.pdf 2] Though NhaA plays a role in changing the pH of a cell, it is actually regulated by pH. It is down-regulated in an acidic pH. | The main antiporter in bacteria has been identified as NhaA. [http://bass.bio.uci.edu/~hudel/m160/presentations/3_antiporter.pdf 2] This protein "uses the electrochemical proton gradient maintained across the bacterial membrane and excretes Na+ in exchange for a 'downhill' flow of protons into the cell." [http://bass.bio.uci.edu/~hudel/m160/presentations/3_antiporter.pdf 2] Though NhaA plays a role in changing the pH of a cell, it is actually regulated by pH. It is down-regulated in an acidic pH. | ||
Revision as of 03:10, 1 February 2011
The literature suggests that a antiporters, specifically a Na+/H+ antiporter, are responsible for controlling pH within cells. 12
As noted in a 2002 article, "Proton fluxes at the plasma membrane are regulated by several families of ion exchangers, including the Na+/H+ exchangers(NHEs) and HCO3 transporters, such as the Na+/HCO-3- cotransporters (NBCs), Cl−/HCO−3 exchangers (AEs), and the Na+ driven Cl−/HCO−3- exchanger (NDAE). 3
NHEs are the most widely discussed antiporters in relation to pH. There are six members of the NHE family and they are evolutionarily conserved. NHE1 is responsible for "pH and cell-volume homeostasis." It is made up of approximately 820 amino acids and is similar in structure to other ion exchangers. The most highly conserved regions of this protein are TM 6 and 7.
While NHEs play a role in shaping intracellular pH, they themselves are regulated by pH: "NHE1 is highly sensitive to changes in intracellular H+ (H+i ), such that reduced pHi allosterically activates the protein (46). Hence, the kinetics of NHE activity in response to H+ is more complex than that observed for extracellular substrates. NHE1, NHE2, and NHE3 are extremely sensitive to low pHi. At physiological pH, NHE1 and NHE2 are essentially inactive, but they are rapidly activated upon reduction in pH (38, 46), whereas NHE3 is active at neutral pHi because it has a higher affinity for H+," 3
Other ion exchangers noted to have a key role in pH are AE1 and NBC1.
In studying the blueberry genome, we should look for these key pH-regulating proteins and note any differences. Are the same regions highly conserved? Are key binding regions different in blueberry?
The main antiporter in bacteria has been identified as NhaA. 2 This protein "uses the electrochemical proton gradient maintained across the bacterial membrane and excretes Na+ in exchange for a 'downhill' flow of protons into the cell." 2 Though NhaA plays a role in changing the pH of a cell, it is actually regulated by pH. It is down-regulated in an acidic pH.
