Difference between revisions of "Papers to Consider"
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* McMillen D, Kopell N, Hasty J, Collins JJ. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/McMillen_2002.pdf (2002).] Synchronizing genetic relaxation oscillators by intercell signaling. PNAS 99:679-84. | * McMillen D, Kopell N, Hasty J, Collins JJ. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/McMillen_2002.pdf (2002).] Synchronizing genetic relaxation oscillators by intercell signaling. PNAS 99:679-84. | ||
* Young E, Alper H. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Young_2010.pdf (2010).] Synthetic biology: tools to design, build and optimize cellular processes. J Biomed Biotechnol. 2010:130781. | * Young E, Alper H. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Young_2010.pdf (2010).] Synthetic biology: tools to design, build and optimize cellular processes. J Biomed Biotechnol. 2010:130781. | ||
− | * Zhou T, Chen L, Aihara K. | + | * Zhou T, Chen L, Aihara K. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Zhou_2005.pdf (2005).] Molecular communication through stochastic synchronization induced by extracellular fluctuations. Phys Rev Lett 95:178103. |
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+ | '''The following papers are listed at the end of my final paper as consideration more specifically for the noise tuner project:''' | ||
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+ | * Breaker RR. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Breaker_2010.pdf (2010).] RNA second messengers and riboswitches: relics from the RNA world? Microbe 5: 13–20. | ||
+ | * Hale L, Lazos O, Haines A, Thomas C. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Hale_2010.pdf (2010).] An efficient stress-free strategy to displace stable bacterial plasmids. Biotechniques 48: 223–28. | ||
+ | * Hooshangi S, Thiberge S, Weiss R. [http://www.ncbi.nlm.nih.gov/pubmed/15738412 (2005).] Ultrasensitivity and noise propagation in a synthetic transcriptional cascade. Proc Natl Acad Sci USA 102: 3581–86. | ||
+ | * Levens D, Gupta A. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Levens_2010.pdf (2010).] Molecular biology. Reliable noise. Science 327: 1088–89. | ||
+ | * Shinar G, Feinberg M. [http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Shinar_2010.pdf (2010).] Structural sources of robustness in biochemical reaction networks. Science 327: 1389–91. | ||
+ | * Stricker J, Cookson S, Bennett MR, Mather WH, Tsimring LS, Hasty J. [[http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/Stricker_2008.pdf (2008).] A fast, robust and tunable synthetic gene oscillator. Nature 456: 516–19. | ||
+ | * To TL, Maheshri N. [[http://www.bio.davidson.edu/courses/genomics/2009/Ho_Shing/Articles/To_2010.pdf (2010).] Noise can induce bimodality in positive transcriptional feedback loops without bistability. Science 327: 1142–45. |
Revision as of 16:11, 20 May 2010
- Atkinson MR, Savageau MA, Myers JT, Ninfa AJ. (2003). Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli. Cell 113: 597 - 607.
- Ghosh B, Karmakar R, Bose I. (2005). Noise characteristics of feed forward loops. Phys Biol 2: 36 - 45.
- McMillen D, Kopell N, Hasty J, Collins JJ. (2002). Synchronizing genetic relaxation oscillators by intercell signaling. PNAS 99:679-84.
- Young E, Alper H. (2010). Synthetic biology: tools to design, build and optimize cellular processes. J Biomed Biotechnol. 2010:130781.
- Zhou T, Chen L, Aihara K. (2005). Molecular communication through stochastic synchronization induced by extracellular fluctuations. Phys Rev Lett 95:178103.
The following papers are listed at the end of my final paper as consideration more specifically for the noise tuner project:
- Breaker RR. (2010). RNA second messengers and riboswitches: relics from the RNA world? Microbe 5: 13–20.
- Hale L, Lazos O, Haines A, Thomas C. (2010). An efficient stress-free strategy to displace stable bacterial plasmids. Biotechniques 48: 223–28.
- Hooshangi S, Thiberge S, Weiss R. (2005). Ultrasensitivity and noise propagation in a synthetic transcriptional cascade. Proc Natl Acad Sci USA 102: 3581–86.
- Levens D, Gupta A. (2010). Molecular biology. Reliable noise. Science 327: 1088–89.
- Shinar G, Feinberg M. (2010). Structural sources of robustness in biochemical reaction networks. Science 327: 1389–91.
- Stricker J, Cookson S, Bennett MR, Mather WH, Tsimring LS, Hasty J. [(2008). A fast, robust and tunable synthetic gene oscillator. Nature 456: 516–19.
- To TL, Maheshri N. [(2010). Noise can induce bimodality in positive transcriptional feedback loops without bistability. Science 327: 1142–45.